Oncorhynchus nerka (sockeye salmon): 115109274
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Entry
115109274 CDS
T07952
Name
(RefSeq) low-density lipoprotein receptor-related protein 5-like isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04150
mTOR signaling pathway
one04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
115109274
04150 mTOR signaling pathway
115109274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115109274
Membrane trafficking [BR:
one04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
115109274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
DUF5050
Vgb_lyase
SGL
EGF_LRP2
cEGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
115109274
NCBI-ProteinID:
XP_029489865
LinkDB
All DBs
Position
LG25:complement(12613211..12707343)
Genome browser
AA seq
1624 aa
AA seq
DB search
MELKLQAIAMDVFLVELLFYSSLLSVVNGSPLLLFANRRDVRLVDVEMGRPESAVVVSDL
EDAAAVDFLYSEGLIFWTDVSEEAIKQTYYNQSTNSLKEVLGTRQTVVVSGLDSPDGLAC
DWLGRKLYWTDSETNRIEVANLDGTSRKVLFWLDLDQPRAIALNPAHRYMYWTDWGEEPR
IERAGMDGSNRKIIVEVDIYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGSSRETVVEG
TLTHPFALTLSDETLYWTDWQTRSIHACNKHTGDKRREILSGIYSPMDIQVLGSDRQPDI
HTPCSDSNGGCSHLCLLSPMQPFYSCACPTGVKLKEDGKTCRPGAEQVLLLARRTDLRRI
SLDLPDFTDIVLQVDDIRHAIAIDYDPVDGYVYWTDDEVKAIRRSRIDGTDAQTLVTTEI
NHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRRILISENLDEPRAIVLDPVNGYMYW
TDWGEKPKIERANLDGMDRLVLLNTSLGWPNGLAIDYEAGKLYWGDAKTDKIEVIDVDGS
NRMTLLEDKLPHIFGFTLLGDYIYWTDWQRRSIERVHKTNAIREIIIDQLPDLMGLKATR
VTEVSGTNGCVEDNGGCSHLCFHRPQGLRCDCPMGLELLSDMRTCVVPEAFLLFTNRADI
RSISLGTNSNDVAIPLTGVKEASALDFDVSENRIYWTDVSTKTISRAFMNGSSVEHVIEF
GLDYPEGMAVDWMGRNVYWADTGTNRIEVARLDGQYRQVLVCKDLDNPRSLALNPANGYM
YWTEWGGKPRIARAHMDGSNIITLVDKVGRANGLTIDYIDQRLYWTDLDTCMIESTNMQG
LQREIVADDLPHPFGLTQYRDYIYWTDWNLRSIERADKRSGLNRTMVQGRLEYVMDILVF
HSSRQDGANDCSQNNGNCAHLCLASPSGSQCRCASHYILDSNSRNCSSPSSFLLFSQKAS
ISRMVLGEQSPDIILPIHVLRNVRAISYDPLDHLIYWVDGRQNIRRARDDGTQSSVVVST
TSTHQQQPDKQPHDLSLDAYSRTVYWTCEATNTINLQRLDGDAVGVVLRDEHDKPRAIVV
NAEKGYMYFTTMQDRSAKIEGASLDGTERESLFTTGLIRPVALALDNKLGKLFWVDADLK
RIESSDLTGANRIVLQDSNILQPMGLTVLGEHLYWIDRQQQMIERVDKLIGEKRTRIQGR
IAYLTSIHAVEDMDPTEFASHPCSHDNGGCSHICIAKGDRTPRCSCPMHLVLLPNLLICG
DPPTCSTEQFTCATGDIDCIPMAWRCDGVAECDDNSDEEHCPVCSPIQFQCDKGQCVDAQ
LRCNGEPDCADNSDEQDCDTICLPNQFRCNNKQCILKKQQCDSYNDCADNSDELFCEFLT
PPSSDVQSPSHTSTIGPVIGIILSVFVMGGMYFVCQRVVCRRYKGPNGAFPHDYISGTSH
VPLNFIAPSSSQHGTFTGISCGKSMMSSVSLMGSSCSGAPLYDRNHVTGASSSSSSSTKG
TFYPQMLNPPPSPATDRSLYNAEIFYSSNSPSTTRSYRPYLMCGVAPPTTPCSTDVCDSD
YTTSRWKSNKYYMDLNSDSDPYPPPPTPRSQYLSAEESCPPSPSTERSYFHLCPPPPSPC
TDSS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaagctacaagcaattgcaatggacgtttttctcgtggaattactgttttat
agtagcttgctctctgtagttaatggatcccccttgctgctgtttgccaaccggcgggat
gtgaggctggtggatgtggagatgggaaggccagagtcagcagtggtggtcagtgatctg
gaggatgctgctgctgtggatttcctctactctgaaggactcatcttctggaccgatgtc
agcgaggaggccatcaagcaaacctactacaatcagtccaccaactctctgaaagaggtc
ttggggacaaggcaaacggttgttgtgtcgggtctcgactcccctgacggactagcttgt
gattggctgggccgtaaactatactggaccgactcggagaccaatcgcattgaggtagcc
aacctggatggcacctctcgcaaggtgctattctggttggacctggaccagcccagggcc
atcgccctgaacccagcccaccgctatatgtactggacagactggggggaggagcctcgc
atcgagagggcagggatggacggaagcaacaggaagatcatagtggaggtggacatctat
tggcccaatggcctcaccattgacctggacgaacagaaactgtactgggcagacgccaag
ctgagcttcatacacagagccaacctggacggctcctcacgggagactgtggtggagggc
accctcacccacccgtttgccctcaccctgtcagacgagactctctactggacagactgg
cagacccgctccatccacgcctgcaacaaacacactggagacaagaggagggagatactc
agtggaatctactcccccatggacatccaagtgctgggttctgatagacagccagatatc
cataccccatgcagcgacagcaatggaggctgctcccacctgtgcctgctgtcgcccatg
caacccttttacagctgtgcatgccccactggagtcaagctcaaggaggatgggaagacc
tgtcgcccaggtgcggagcaggttctactgctggccaggcggactgacctgaggaggatt
tctctggacctcccagatttcactgacatcgttctgcaagtggacgacatccgccatgcc
atcgccatcgactatgaccctgtggatggatatgtgtactggacagacgacgaggttaaa
gccatccgccgctcccgcattgacggcaccgatgcccagaccctggtcaccacggagatc
aaccacccagatggcattgcggtggattgggtggcccggaacctttactggacggatacg
ggtactgaccgtattgaggttacaaggctgaacggaacctcgcgccgcattctgatctca
gagaacctggatgaaccaagggccattgtgctggaccctgtcaatggttacatgtactgg
acagactggggggagaagcctaaaatagagcgtgctaacctggatggaatggaccgtctc
gtgctgctcaatacctcgctgggttggcccaacggtttagccatcgactatgaagcagga
aaactatactggggcgatgccaaaacggacaaaattgaagtgattgatgtggacggctcc
aataggatgaccctactggaggacaagctaccccacatctttggcttcacgctgctgggc
gactacatctactggacggactggcagaggaggagcatcgagagggtccacaagaccaac
gccatccgagagatcatcattgaccagctgcctgatctcatgggactcaaagccaccaga
gtcactgaggtctccggcacaaacggctgtgtggaggataatggcggctgcagccacctg
tgtttccaccggccccagggcctgcgctgtgactgtcccatgggcctggagctcctcagt
gacatgaggacatgcgtggtgcccgaggctttcctgctcttcaccaaccgggctgacatc
cgctccatctccctcgggaccaactctaacgacgttgccatccccctcaccggggtcaag
gaggcctccgccctcgactttgacgtctccgagaacaggatctactggactgacgtcagc
actaagaccatcagcagggccttcatgaacggcagctctgtggagcatgtgatcgagttt
gggctggactacccagaaggcatggcagtagactggatgggcaggaacgtgtactgggcc
gacacagggaccaaccgcatagaggtggcccggctggatggacaataccggcaggtcctg
gtgtgtaaggacctggacaaccctcgctcactggcccttaaccctgccaatggctacatg
tattggacagagtggggaggcaagcccaggatcgccagggcccacatggacggcagcaac
ataattaccctagtggacaaagtgggcagagccaacggcctcaccatcgactacatcgac
cagagactctactggaccgacctggacacctgtatgatagagtcaaccaacatgcaaggt
ctgcagagggagatagtggctgacgacctccctcatccgttcggtctgacccagtaccgg
gactacatctactggacagactggaacctgcgcagcatcgaacgggccgacaagcgctct
gggctgaaccgcaccatggtccagggacgcctggagtacgtcatggacatcctggtcttc
cactcctctcgccaggacggtgccaatgactgctcccagaacaacggcaactgtgcccac
ctgtgcctggcgtcaccctccggctcccagtgccgctgtgcctcccactacatcctggac
tcaaacagcaggaactgcagctccccctcgagcttcctcctgttcagccagaaggcctca
atcagccgcatggttctgggtgagcagagccccgacatcatccttcccatccacgtcctc
cgcaacgtccgggccatcagctacgaccccctagaccacctgatctactgggtggacggg
cggcagaacatcaggagggcccgcgacgatggcacacagtcgtcagtggtggtgtccacc
acttccacccaccagcagcagcctgacaaacagccccacgacctgagcctggacgcctac
agccgtactgtctactggacttgtgaggccaccaataccatcaacctccagcgcctggac
ggagatgccgtgggcgtggtgctgcgagatgaacatgacaaacccagagccattgtagtc
aacgccgaaaaagggtatatgtatttcacgaccatgcaggatcgctctgctaagatcgag
ggagcgtctctggatgggacagagcgggagtctctgttcaccacgggtctgatccggcct
gtagccctggccctggacaacaagctggggaaactcttctgggtggacgctgacttgaaa
cgcattgagagcagtgacctcactggagccaatcggatcgtcctccaggactctaacatc
ctgcagcccatgggtctgacagtgctgggggagcacctgtactggatcgacagacagcag
cagatgatcgagagggtggacaagctgattggggagaagaggacccgtatccaaggccgc
attgcctacctcaccagcattcacgctgtggaagacatggaccctacagagtttgcttct
catccctgttcccatgacaacggaggctgctcacacatctgcattgccaaaggagaccgg
acaccacgctgctcctgtcccatgcacctggtcctgctgcccaacctgctcatctgtgga
gacccacccacctgttccacagagcagttcacctgtgccacgggcgacattgactgcatc
cccatggcatggcgctgtgacggcgttgctgagtgtgatgacaacagtgacgaggagcac
tgccccgtatgctcgccaatccaattccagtgtgacaagggccagtgtgtggatgctcag
ctacgctgcaacggagagccagactgcgcagacaactccgatgaacaggactgtgacacc
atatgcctgcccaaccagttccgctgcaacaacaagcagtgcatcctgaagaaacagcag
tgtgactcctacaatgactgtgctgacaactctgacgagctcttctgtgaattcctcacc
cccccgtcaagcgacgttcaatcaccatctcacaccagcaccatcggcccagtcattggc
atcatcctgtcagtgtttgtgatgggagggatgtactttgtgtgccagcgggtggtgtgc
cgccgttacaaaggtcccaacggagccttcccccacgattacatcagtggcacctcacac
gtacccctcaacttcatcgcacccagcagctcacagcacggaaccttcacaggtatctcg
tgtgggaagtctatgatgagttctgtcagtctgatggggagcagctgtagtggggcgcca
ctctatgacaggaaccatgtaacaggggcctcctccagcagctcctccagcactaaggga
accttttatccacagatgctcaacccgcctccctctccagccacggatcgctccctgtat
aatgcagagatcttctactcctctaacagtccctccaccaccaggtcttacaggccttat
ctaatgtgcggtgtggcaccccccaccaccccatgcagcactgacgtctgtgacagcgac
tacaccacaagtcgttggaagagcaacaagtactacatggacctaaactcagactctgac
ccttaccctcctccccccactccccggagccagtacctatcagcagaggagagctgcccc
ccttctccatccacagagcgcagttactttcacctctgtcccccacccccgtcaccatgc
actgactcttcatga
DBGET
integrated database retrieval system
