Oncorhynchus nerka (sockeye salmon): 115109408
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Entry
115109408 CDS
T07952
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 2-like isoform X1
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115109408
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
115109408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
115109408
NCBI-ProteinID:
XP_029490119
LinkDB
All DBs
Position
LG25:complement(20638457..20669455)
Genome browser
AA seq
1824 aa
AA seq
DB search
MMKNKNKKQEDEGSTQSNASSNSASEESNHSGLESGSQSESEQGRERRRLHHSGESNSSS
ESGSQSGSESESQQASAEVKDRQPVKKKDNLSDVKKMWEEHPDVYGVRRSNRSRQEPARL
NIGAGGSSDSEGESPKRKAPRQKKKANTWKSDESDDDDDDDDDEEDASSADSEQEEKKVR
SRRLPARRPKNKSSTVKKQQPPKGRKTRKQESSVEEDDDDDDDDDDDDDEDTPKRQTRRR
VSAKVSYKEDQNDFETDSDDLIEMEGAEVEPEDDSETIEKIMDIRTGKKGACGASTTQYA
VEENGDPGADFDPEKDEGEIHYLIKWKGWSYIHNTWESIDSLTQQKVKGLKKLDNFKKKN
DELSAWLNKASPEDSEYYNCQQELTNDLNKQFHILERVIATKTGKTQGLSDFPSHSHKNG
ASSNEPEYLCKWMGLPYSECSWEDGALLGKKFQHCIDGFTNRNSSKTVPSKDCKVSEVLK
QRPRFVALKNQPSYIGDENLQLRDYQLDGLNWLAHSWCRCNSVILADEMGLGKTIQTISF
LSYMFHQHQLYGPSLVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVMSRKSIRDYEWVCH
QTKRIKFNALITTYEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLIEFRSNHRL
LITGTPLQNSLKELWSLLHFLMPDKFENWEDFESEHGKGTDNGYQSLHKVLEPFLLRRVK
KDVEKSLPAKVEQILRVDMSAVQKQYYKWILTRNFRALQKGTRGSSSGFLNIVMELKKCT
NHGFLIKQPEEECDTPQEHLQALVRGSGKLVLLDKLLTRLRDRGNRVLIFSQMVRMLDIL
AEYLALKRYPFQRLDGSIKGEIRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVV
IFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRM
DTTGRTVLDNNSGNSNSNPFNKDELTAILKFGAEDLFKEAEGEETEPTEMDIDEILRLAE
TRESDQGSSATDELLSQFKVANFSNMEESAPEMVERMVPDWDDIIPEDQRRRLEEEQKQK
EMEDIYMLPRSRSSNKRAQANDSDSDVGSKLKHRSSGSESETDDSGDDKKPKRRGRPRAR
KNNVEGFTDAEIRRFIKAYKKFGAPLERLEGIARDSELVDKSQADLKRLGELIHSSCVTA
VQEHEEHLRENPSEAKGPGKRRGINIKISGVQVNAKSIIQHEEEFEPLHKAVPANPTERN
QFQLTCRVKVPHFDVDWDLQDDTQLLLGVYEHGYGNWDLMKTDPDLKLADKILPDDPEKK
PQGKQLQARSDYLLKMLKKEADCKDVTKEEAKVKKRKPRLKKENKAPKDEQGNDISSPRM
SDNPSEEGEVRDDGTEKTPTKKRQKKKDNKENKEKHGTPKKEKDADKDKKRPKPKKEKAK
GAKGKKPQGPVHITAGSDPVPIGEEDDELDQENFSICKERMRPVKKALKQLDKPDEGLSV
QEQLQHTRTCLLKIGDRITECLKAYSDPEHVKTWRRNLWIFVSKFTEFGARKLHKLYKMA
QKKRSREEEKEHRKKGDDPSGRKKTFRAEASGSSRDSTGTQPSSKSHPGMPHPSPTSPHG
PHREGYNQSNKRHFGNDDRGDWQRDRKYNYPGNSNQPWQSERHHPYDAHRYKDHHYGDRR
PREDSYRSSSSSYRSGGSSSSPRKRPYDQYDSDREHRDRRAYYDRHPDSKRRRGDDFRPP
QDFRGSGGHPQDFRVRMPEHRGPPGPAGPEHFTRPYPDNKPPPMLDPRSPQAQKSPQDSR
SPTAERTAEQKAASADLNWNNRKT
NT seq
5475 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagaataagaataaaaagcaagaagatgaaggttcgactcaaagcaatgcatca
agcaattcggcgtcagaagaatcgaaccactctgggttggagtctgggagtcagtcggag
agtgagcagggcagggagaggagaagattgcaccactcaggagagtccaacagctcttct
gaatctgggagccagtccgggtctgagagtgaatcccagcaggcctcggcagaggtcaag
gacagacaaccagttaaaaagaaagacaatctgtcagatgtgaagaagatgtgggaagag
catccagatgtctatggggtcaggcgatcaaatcgcagtagacaagaacctgctcgtctc
aatattggagctgggggtagcagtgactccgaaggtgaaagtcctaaaagaaaagcacca
cgacagaagaagaaagcaaatacctggaaaagtgatgaatcggatgatgatgatgatgat
gatgatgatgaggaggatgccagcagtgcagacagtgagcaggaagagaaaaaagttaga
tccagacgacttcctgctagaagaccaaagaacaaatcatctacagtcaaaaaacagcag
cctccaaagggaaggaaaaccaggaaacaagagtcatctgtggaggaagatgatgacgac
gacgatgatgatgacgacgatgatgatgaagataccccaaagagacaaacccggcgaagg
gtgtctgctaaagtcagttacaaggaggaccaaaatgactttgagactgactctgacgac
ctgatagagatggagggagctgaggtggagccggaagatgacagcgagaccattgagaag
atcatggatatcaggacaggcaaaaaaggagcctgcggggcttccactacgcagtatgct
gtggaggaaaatggggacccaggagctgactttgacccagagaaggatgagggagagatc
cattacctgatcaagtggaaaggctggtcctacatccacaacacctgggagagcattgac
tccctcactcaacagaaggtcaagggactaaagaaactagataacttcaagaagaagaac
gatgagctcagtgcttggttaaacaaagcatcccctgaggattcagaatattacaactgc
cagcaagagctaaccaatgatttaaataagcagttccatattctggagagagtcattgcg
actaaaaccgggaagacacagggtctctcggattttccttctcacagccacaagaatggt
gcttcttccaatgagccagagtacctgtgtaagtggatgggcctgccttattcagagtgc
agctgggaggatggagctctgctggggaagaagttccagcactgtatagacggcttcacc
aacaggaactccagtaaaacagtcccctccaaagactgcaaagtgagtgaggtgttgaaa
cagaggcccagatttgttgcactaaagaaccagccatcgtacattggggatgagaacctg
cagctgagagattaccagttagatggactgaactggctggctcactcctggtgcaggtgc
aatagtgtgatcctggctgatgagatgggtctggggaaaaccatccagaccatctcgttc
ttgtcctacatgttccaccagcaccagctgtatgggccctccctggtggtggtaccccta
tccaccctcacctcctggcagagagagtttgacacctgggcccccgatatgaacgtggtg
gtctacttgggagacgtgatgagcaggaaatcgatccgtgactatgagtgggtatgccat
cagacgaagagaataaagttcaatgcacttataaccacgtatgaaattctactgaaagac
aagggggtgttggggaacataaactgggcttttttgggtgtggacgaagctcacaggcta
aagaatgacgactccctgttgtacaaaaccctgattgagttccggtccaaccacagactt
cttatcacagggacaccactgcagaactctctcaaagagctgtggtcccttctgcacttc
ctcatgcctgacaagtttgaaaattgggaagattttgaaagtgagcatggtaaagggact
gacaatggctaccagagccttcacaaagtccttgagcccttcctcctgaggcgtgtaaag
aaggatgtggagaaatccctgcctgccaaggtagaacagatcctccgtgtggacatgtct
gctgtgcagaagcagtactacaagtggattctcaccaggaacttcagagccctgcagaaa
ggcacccgaggcagctcctctggcttcctcaacatcgtcatggagctgaagaagtgcact
aaccatggtttcctcatcaaacagcctgaggaagagtgtgacactccacaggagcacctg
caggcgttggtgaggggcagtgggaagctggttcttctggacaagctactgaccagactt
cgggacaggggcaacagagtcctcatcttctcccagatggtgcgcatgttggacatactg
gctgagtacctggccctgaagcgctacccattccagcgcctggatggctccataaaggga
gaaatacgaaaacaagcacttgaccactttaatgctgaaggttctgaggacttctgtttc
ctgctgtccacaagagctggaggtttgggtatcaaccttgcctctgcagacactgtggtc
atctttgactctgactggaaccctcagaacgacctgcaggctcaggccagggctcacagg
attggccagaagaagcaggtgaatatctatcgcttggtcacaaagggatctgtggaggag
gacattattgagagagccaagaagaagatggttttggaccatcttgtaattcagagaatg
gacaccactggtcgaactgtattggataacaactccggaaattcaaactccaacccattc
aataaagatgagctgactgccattctgaagtttggagctgaagatctgttcaaagaggca
gaaggagaggagactgaacctacggagatggatattgatgagatcttgcggttggctgaa
accagagaaagtgaccagggatcaagtgccacagatgagcttctctctcagttcaaggtg
gccaacttctccaacatggaggagagtgctccagagatggtggagcggatggtgcctgac
tgggacgacatcatcccggaggaccagcggcggaggctggaggaggagcagaagcagaag
gagatggaggacatatacatgctgcctagaagcaggagctccaataagagggcccaagcc
aacgacagtgacagtgacgttggctccaagctgaagcaccgctcctcgggctccgagagc
gagacggacgatagcggcgatgacaagaagccaaagaggagaggcaggccccgagcccgc
aagaacaacgtggagggttttactgatgcagagatccgcaggttcatcaaggcttataag
aaatttggagctccgcttgaaaggctggagggtattgcccgggactccgagctggtggac
aaatcccaggcagacctgaagagattgggcgagctgatccatagcagctgtgtgactgct
gtccaagagcatgaagagcacctcagagagaatcccagtgaagccaaaggccctgggaag
cgcagaggtattaacatcaagatctcaggagtgcaggtcaatgccaagtccatcattcag
cacgaggaggagtttgagccactgcacaaagctgtgccagctaatcctactgagagaaac
caattccaactgacctgcagagtgaaggtgcctcactttgacgtggactgggatctgcag
gatgacactcaactgttgctgggggtctatgagcatggctacggaaactgggatctgatg
aagaccgaccccgatctcaaactcgcagacaagattctcccagatgacccagagaagaaa
cctcaagggaagcagttgcaggccagatcagactatcttctgaagatgctgaagaaagaa
gcggactgtaaagatgttactaaggaggaggccaaagtgaagaagaggaagcctcggttg
aagaaagagaacaaggcccctaaagatgaacagggcaatgacatctcctccccccgcatg
tcagacaacccctcagaggaaggggaggtgagggatgacgggactgaaaaaactcccaca
aagaagaggcagaagaaaaaggataacaaagagaacaaagaaaaacacggaactcctaaa
aaagagaaggacgcggacaaagacaaaaaacgtccgaagccaaaaaaagaaaaggcaaaa
ggagctaaagggaagaagccccaggggccggtccacattactgctgggagtgaccctgtt
cccatcggagaggaggacgatgagctggaccaagagaacttcagcatatgtaaggagcgc
atgaggccggtgaagaaggccttaaaacagctggataagcctgacgagggcctgtctgtt
caggagcagctccaacacacacgcacctgcctgctgaagataggagaccgcatcactgag
tgtcttaaagcctacagcgacccagagcatgtcaaaacatggcgtcggaacctctggatt
tttgtgtctaagttcacagaatttggagcgaggaagcttcacaagctgtacaagatggct
cagaagaagcggtctcgggaggaggagaaggagcatagaaaaaagggggatgacccgtca
ggcaggaaaaagactttccgagcagaggcgtctggttccagtcgagactccaccggcacc
cagccatcgtccaagtctcatccaggcatgccccacccctctccaacgtccccccatggt
ccccacagagaaggctacaaccagtccaacaagcgacactttggaaatgatgatcgagga
gattggcagcgagatcgtaaatacaactaccctggaaatagcaaccagccctggcaaagc
gagcggcatcatccatatgatgcccatcggtataaggaccatcactatggtgaccgtcgt
ccgcgtgaagactcctaccgcagcagctctagtagttaccgtagtggcggcagcagcagc
tcccctcggaagaggccgtatgaccagtatgacagcgaccgagaacacagggaccgtcgt
gcctattacgacagacatccagactcaaagcggagacgcggcgatgacttccgtcctccc
caagacttcagggggagtggaggccatccccaagacttcagggtgaggatgccagagcat
agggggcccccggggccagcagggccagaacacttcacccggccctatccagacaacaaa
cccccccccatgctggacccacgctccccacaggcgcagaagtccccccaggactcgcgc
tcgccaactgcagagcggactgcagagcagaaagcagcttcggctgatttaaactggaac
aacaggaagacatga
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integrated database retrieval system
