Oncorhynchus nerka (sockeye salmon): 115109512
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Entry
115109512 CDS
T07952
Name
(RefSeq) interferon regulatory factor 7-like isoform X1
KO
K09447
interferon regulatory factor 7
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04620
Toll-like receptor signaling pathway
one04621
NOD-like receptor signaling pathway
one04622
RIG-I-like receptor signaling pathway
one04623
Cytosolic DNA-sensing pathway
one05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
115109512
04621 NOD-like receptor signaling pathway
115109512
04622 RIG-I-like receptor signaling pathway
115109512
04623 Cytosolic DNA-sensing pathway
115109512
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115109512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115109512
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
115109512
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
115109512
NCBI-ProteinID:
XP_029490328
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Position
LG25:complement(26498621..26509688)
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AA seq
420 aa
AA seq
DB search
MQSCKPQFADWLIEQVRTEQYTGLFFIDNNKFRVPWKHNSRKDCSEDDRKIFRAWAVVSG
KINEHPTDKAKWKTNFRSALNSLCRRFKMVEDHSKDSNDPHKVYLVINEYNYESPHIEEI
TPENYGLDCALIPTENTPPGMEHDILNFSNLTLNPLDLNQHTENSIPVHTHHPVPPVLVQ
QPYYQDLPTVNPDALLNLPAAHSSLWDLEITISYRGSEMRKTQVSGPRVQLHYQCNALEP
NTQPLCFPSTDGLPDHKQIEYTNCILGSVQRGLLLEVQNTGIYGYRQDKCHVFSSTSDPR
EAHPEPRKMPQNEMVQLLSFQQYENELIAFKENRRGSPDYTIHMCFGEKFPDGKPLEKKL
IVVKVVPLICRYFHEVAQEEGASSLQNDNISLQISHHNSLMELINATWPDGPQHAMGQYF
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagctgcaaacctcagttcgctgactggctgatagaacaggtgcggaccgagcaa
tacactggtttgttctttattgacaacaataagttcagagtcccgtggaaacacaattct
aggaaggattgctccgaggacgaccgtaaaatattcagggcatgggcagtggtcagtggg
aaaatcaatgagcatcccactgacaaggcaaagtggaagaccaacttccgctctgcactg
aacagcctgtgcaggcgtttcaagatggtggaagaccactccaaggactcaaacgacccc
cataaagtctacctggtcatcaatgagtataactatgagagcccgcacatagaagaaatc
actccggagaactatggccttgactgtgctctcatccctacagaaaacacacccccaggc
atggagcatgatatactgaactttagcaacctaaccttgaaccccctagacctgaaccaa
cacacagagaattctataccggtacacacacaccacccagtgccaccagtcctagtacag
cagccatactaccaagatctcccaacagtaaatccggatgccctgctcaacctgcctgcc
gcccactcatccctctgggatttggagatcaccatctcctatagggggagcgagatgcga
aagacccaggtgtccggccccagggttcagctccactaccagtgtaatgctctcgagccc
aacacccagcccctctgcttccccagcactgacgggttgccagaccacaaacagattgaa
tacaccaactgcatcctaggaagcgtccaaaggggtcttctcctcgaggtacaaaacact
ggtatctatggttaccggcaggacaagtgccacgtgttctccagtactagcgaccccaga
gaggcacaccctgaacccaggaagatgcctcaaaatgaaatggtacaactgttgagcttc
cagcagtacgaaaatgagctgatagcatttaaggagaacaggcgaggttctcctgactat
accatccacatgtgctttggtgagaagttccctgacggaaaacccctggagaagaaactc
attgttgtcaaggtggttcccctgatctgtcgttacttccacgaggtggcccaggaggag
ggggcgtcgtccctccagaatgacaacatcagcctgcagatctcccaccacaacagcctg
atggagctcatcaatgccacctggcccgacggcccacagcacgccatggggcagtacttc
tag
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