Oncorhynchus nerka (sockeye salmon): 115109635
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Entry
115109635 CDS
T07952
Name
(RefSeq) laminin subunit beta-4-like isoform X1
KO
K06245
laminin, beta 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115109635
04518 Integrin signaling
115109635
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115109635
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Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
LAMB1
EGF_LMN_ATRN
LAMB4
Laminin_I
Motif
Other DBs
NCBI-GeneID:
115109635
NCBI-ProteinID:
XP_029490676
LinkDB
All DBs
Position
LG25:36800611..36821688
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AA seq
1789 aa
AA seq
DB search
MVSLFLLVLLVPGALLQEDCDVNSCHPQLGDLMVGRAAQLSASSTCGRNGPQNYCILGYL
EDEQKCFKCDSRQPYNLYNNQNSHQIENVITTFGPERKMKWWQSENGVHQVSIRLDLETL
FQFSHLVLTFKSFRPAAMLVERSKDYGYSWKVFRYFAEDCASHFPGVSQGPADSTDDVVC
DSRYSASEPSTDGEVVLKALDPSFDIENPYAPHIQEQITLTNLRVNFTHLFTLGDTLLGR
KKRNPQEKYYYALYEMVVRGSCFCNGHASMCMPVDGTRGDVLNEPGVIHGRCVCQHNTVG
TNCERCQDFYNDVPWRPAGQSDPHVCRRCNCHGHSETCHFDIDQYQASGGVSGGVCDGCR
HDRMGPQCERCRPYLYQDPQLSMEDPRGCISCDCDLTGSLDNGLCDPVSGRCVCKENVAG
DRCDRCKFGFYGFSQEDPTGCQRCRCNSLGSVLTPYPCDQVTGQCVCQRLAMGPLCDQCL
PGYWGLGNTVHTCSACDCDHGGAYSSTCSSLDGQCQCLPNMVGRSCGDPAPGHFLAALDY
YLYEAENAAPLEGKSSSPLLKPTDMPVCEEYYRQQGYDIKYQNGRLVLTRRSKRQARRRR
QGQRSIPLDPGSALQIVPRERTPDVPITWTGPGFVRVLDGAGLRFTVDNLPASIDYHLVI
RYEPESPDDWMASVSIVPLLAGDGGCPTSPKGEKTLTIPGAARVAILDTPVCLNAGRRYY
VDITFRKQPNSNPQSSSHTLVDSMGLIPKMESVQDFCSQSELDSFRRFRCFELAAEQETL
PDMCYGLIGSLSARIHNGAMLCRCNIQGSHGPYCSKFGGLCECKANVVGRCCDSCAPLNF
GFGPNGCAPCECDRRGAVAELCDQVRGQCPCRMEVGGRRCDRCLSGYYGFPLCRPCKCNG
LAELCDQDTGACLDCREHSTGYNCESCVEGYFGDPVSREPCKPCLCPDTQSSGRFFASTC
NKDPESGSLTCDCLAGHTGLRCDACSAGFYGDLTAPGGGGCEECLCNNNIDPADSDACDS
VTGECLRCLHNTQGPRCQSCKPGYYGDALAQDCKECSCDRQGTDVTQCPLGSPCFCDPLT
GQCPCRAGAVGTLCDECATGFWNIQGESGCQPCKCDPANSFNNHCDKVTGHCQCRTEFGG
RQCDECGENHFGNPDLQCVSCDCNMEGTDRPACNPLTGECLCRIGVMGIFCDECAPGYDQ
VFPACLPCHPCAVLWADNVTDVQRAAQRMRTFIPPHGEQLEPGHSRQLQRMLEMHSKLDY
LGNLTGRSLPRVKDVEKLCVIISKLKDSIDPNAIIVDSSSLLNTEIDNIHHEFKMLLDNL
RNKISEAPTLDLKEMQEALEKIRKQHADFMADEKKVKEAERALENSMDTRQEIKDHLSSC
SILGDMEGLEKKVKALSVAKLNKNICGGPGDEECSKSECGGALCRDFLGQRECGGPTCKG
SFPVSHNATKTAEQVENDLIDLLQKLKDSKIKINEAKQMTQGTHEQAKELQKKITDSKEK
FKREKNDTKDLINRVKDYLTDEMVAPEDIENLVKVVLAIQLPGSPDDIRSMIQNIRGVLT
NFIDFKEDLKKLKDQAKTAQDLLEKAQAIRDRTRGIDVTDLKKTMTDTENTQDKVEKDLE
KAKESNGVADKMIKEIEKKLNNIETNLNSTRTPEMLEEIEVLKSKTEMNREQVEQAKADA
DAAIGATTDAEKGLDKVTALFDRLKTGNTNQTNNEAANERLKNITVEAEKVAKDVQEKIQ
QIDDLEKKIQDFIRNKEDKAKEVAMLLEMVEALQKEIAARVDGYINCTS
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atggtttctctgttcctgctcgtgttgctggtacccggggccctcctccaggaagactgt
gatgtcaactcttgccacccccagctgggggacctgatggtgggccgcgctgcccagctc
tccgcctcctccacctgtggacggaacgggccccagaactactgcatcctcggatacctg
gaggatgagcagaagtgtttcaaatgtgactccaggcagccctacaacctctacaacaac
caaaacagccaccagattgagaacgtcatcaccacctttggccctgagcgcaagatgaag
tggtggcagtctgagaatggggttcatcaagtcagtatccggctggatctggagactctg
ttccagttcagccatcttgtcctcactttcaagagtttccgtcctgccgccatgctggtg
gagaggtccaaagactacgggtacagttggaaggtgttccgttactttgccgaggactgt
gcctcccacttccctggggtctcacaggggccggctgacagcaccgatgacgtcgtctgt
gacagcagatactccgcttcagagccatctactgacggagaggtggtgttgaaggctcta
gatccaagctttgacatagagaacccatatgctccccatattcaagagcagatcaccttg
accaacctgcgggtcaacttcacccatctgttcaccctgggtgacaccctactggggcgg
aagaagaggaaccctcaggagaagtactactatgccctgtacgaaatggtggtgcgcggc
agctgcttctgtaatggccatgccagcatgtgtatgcccgtggatggcacccggggtgac
gtcttaaatgagcctggcgtgattcacgggcgctgtgtatgccaacacaacactgtgggc
acaaactgtgagagatgccaggacttttacaacgatgtcccctggaggccggccggccaa
tctgacccacatgtctgcagaaggtgtaactgtcacggtcattcggagacgtgtcacttc
gacatagaccagtaccaggccagtgggggggtcagcgggggggtgtgtgacggttgccga
cacgaccgcatgggtccccagtgtgaacgctgccgaccctatctctatcaggacccccag
ctctccatggaagaccctcggggctgtatctcatgtgactgtgacctgacggggtccctg
gataacggcctgtgtgaccccgtgtcgggccgctgcgtgtgtaaggagaacgtggcgggg
gacaggtgtgatcgctgtaaatttggcttctacgggttcagccaggaggaccccactggc
tgccagagatgcaggtgtaactccctgggtagtgtcctgaccccctacccatgtgaccag
gtgacaggccagtgtgtatgtcaacgcctcgccatgggacccctgtgtgaccaatgtctg
ccaggttactggggtctggggaacactgtacacacctgctcagcttgtgactgtgaccat
ggaggagcctacagcagcacgtgctcttcattggacggccagtgtcagtgcctgccaaac
atggtgggccggagctgtggtgatcctgccccgggacatttcctggctgctctagactac
tacctgtacgaggcagagaacgctgccccactggagggaaaaagctcctcccctctgttg
aaacccaccgacatgcctgtgtgtgaggaatactacagacagcagggctatgacatcaaa
tatcaaaatggccgcttggtcctgaccaggagaagcaaaagacaagccaggaggagaaga
cagggacagaggtccattcccctggacccaggctcagccctccagattgtgccccgggag
aggacaccagatgtaccaatcacttggactggcccaggattcgtgcgggtcctggatggt
gctgggcttaggttcactgtggataacctcccagcgtccatcgactaccatctagtcatc
cgctatgaaccagagtcgccagatgactggatggcctctgtgagcattgttccattattg
gctggtgacggaggttgtcccactagcccgaaaggggagaaaaccctcaccatacctggg
gctgccagggttgccattttggatacgcctgtgtgtctgaacgcgggaagaagatattat
gtggacatcacttttaggaagcagcccaactctaaccctcagtccagctcacataccctc
gtcgactcaatgggtctgatccctaagatggagtctgtgcaggacttctgttcacagagt
gagctggactcgttcagaagattccgctgttttgagttggctgctgagcaggagaccctg
cctgatatgtgttatggcctcattggaagcctgtcggctcgcatacacaacggtgccatg
ctttgcaggtgtaacatccagggttctcatggcccctactgcagtaaattcggagggctc
tgtgagtgcaaggccaacgtggttggccgctgctgtgactcctgcgcccccctgaacttc
ggcttcggccccaacggctgtgcaccctgtgagtgtgaccgtcgcggtgcagtggcggag
ctgtgtgaccaggtcagaggtcagtgtccgtgtcgtatggaggtgggcgggcgacgctgt
gatcgttgcctgtctgggtactacggcttcccactgtgtcggccctgtaagtgcaacggc
ctggctgaactgtgtgaccaggacactggagcctgcctggactgcagggagcactccacc
ggatacaattgtgagagctgtgtggagggttactttggtgacccagtctccagggagccc
tgtaagccttgtctgtgtcctgacactcagtccagtggacggttctttgccagcacctgc
aacaaggacccagagtctggtagcctaacttgtgactgcctggctggacacacaggtctc
cgctgtgatgcctgctccgctggtttctacggcgacctgaccgcgccgggcggcggcggc
tgcgaagagtgtctctgtaacaacaacatcgaccctgctgacagtgacgcgtgtgacagt
gtgacgggcgagtgtttgcgttgcctccacaacacccagggaccccgctgtcagagctgt
aagcctggctactatggagacgcactggcccaggactgcaaagagtgctcctgtgaccgg
cagggaacggatgtgacccagtgccctctgggcagcccgtgtttctgtgacccgctgacg
ggtcagtgcccgtgtcgggcgggcgcggtgggcacgctgtgtgacgagtgtgccaccggc
ttctggaacattcagggagagtccgggtgccaaccgtgcaaatgtgaccctgctaactcc
ttcaataaccactgtgacaaggtgactggtcattgccagtgtcgtactgagtttggagga
agacagtgtgatgagtgtggggaaaatcactttgggaaccctgacctgcagtgtgtttcc
tgcgattgtaacatggagggtaccgaccgccccgcctgcaacccattgacgggtgagtgt
ctgtgccgcattggtgtgatgggcatcttctgtgatgagtgtgcccctgggtatgaccaa
gtcttccccgcctgcctcccgtgccacccctgtgccgtcctgtgggcggacaacgtcacc
gacgtccaacgtgccgcccagaggatgcgcaccttcatccctccccacggcgaacagctg
gagcctggacacagtcgtcagttgcaacgaatgctagagatgcactccaagctggactat
ctggggaacctgacagggagatcgctacctcgggtgaaagacgtggagaagctgtgtgtc
ataatctcgaagctcaaagactccatagaccccaacgccatcatcgtggactcatcatct
cttctgaacactgagatcgacaacatccaccacgagttcaagatgctgttggataactta
aggaacaaaatcagcgaggctccaacactagatctaaaagaaatgcaggaggccctggag
aagatccggaagcagcatgcagacttcatggctgatgagaagaaggtgaaggaggccgag
agggccctggagaactccatggacacacgtcaggaaatcaaagaccatctgtccagctgc
agcatcttgggagacatggaggggctggagaagaaggtcaaggctctgagtgtggccaaa
ctcaacaaaaacatctgtggaggcccaggcgatgaggaatgctccaaatcagagtgtggg
ggtgcgctgtgtcgagacttcctgggacagagagaatgtgggggtcctacgtgcaagggc
agcttccctgtgagccacaatgccacaaaaacagctgagcaagtagagaatgatcttatc
gacctgctccaaaaactaaaggactccaagatcaagatcaatgaggccaaacagatgacc
caaggcactcatgagcaggcaaaggagctacagaagaagatcactgacagcaaggagaag
tttaagagggagaagaatgacaccaaggacctcatcaatagggtcaaagactacctcaca
gatgagatggtggcgccagaggacatagagaatttggtcaaggttgttctggccatccag
ctgccgggctctccggatgacatccgctccatgatccagaacatccggggcgtgctgacc
aacttcattgatttcaaggaggatctgaaaaaactgaaggaccaagccaagacagcccag
gacctgctggagaaagctcaggctatcagggacagaaccaggggaattgatgttacggat
ctcaagaaaaccatgacggacactgagaatacacaggacaaggtcgagaaagacctggag
aaggctaaggaaagcaatggcgtggcggacaagatgattaaagagattgagaagaaactg
aacaacatagagactaacttgaactctactagaactccagagatgctggaggagattgag
gttctgaagagcaagaccgagatgaacagagagcaggtggagcaggccaaagctgatgca
gatgcagccataggtgccactactgacgcagagaaggggcttgacaaggtgactgcgctg
tttgataggctaaagacgggaaacacaaaccagaccaataatgaagcggccaacgaacgc
ctgaagaacattactgtggaggcagagaaagttgcaaaagacgtccaagaaaaaattcaa
caaattgacgacttggagaaaaagatccaagacttcatcagaaacaaagaggacaaggcc
aaggaggttgccatgttgctggagatggtagaagccctccaaaaggagattgctgcgcgt
gtggatggttacattaactgtacctcctaa
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