Oncorhynchus nerka (sockeye salmon): 115109649
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Entry
115109649 CDS
T07952
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115109649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115109649
03036 Chromosome and associated proteins [BR:
one03036
]
115109649
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115109649
Coactivators
SAGA/TFTC/STAGA complex
115109649
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115109649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
115109649
NCBI-ProteinID:
XP_029490700
LinkDB
All DBs
Position
LG25:37720823..37754928
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AA seq
1004 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATFSDIKREGSTGTVSQFSGK
VRDQVGSLEPPQQGHPKAVLNAEPCANQAISNKSITASTSSITTGGIINAGTNLQTHGAA
SRIISPAPPGSVTLPAQTTSYNRGTVLGPAETSAVTAPNSNLTTTTAIRTPSPGLQSFNG
SPGAVKLVNSPAAAPQIGLGGNTVISTASAGNSNIIVSMASQPPSLPNYPVSQSAVAFVT
PTVALQRHPNPMASASQNGVIDPKVSAVVTQGAGSPGATTSQVMNRNNTLINTTMVAPNQ
PVSAGQSIILGGSPSPVVVNSPISQAQSVASPTLAAGVKPTVNGVGQPTVTIVRPPGAPV
MATSVQQQRPGLVASPTRTVAPQMVVRPPQQTTIQLPPGFTIPPGMVLVRTDTGQLVMVP
QQVLAQAQAKTQQGQAAVSNICPRPATPTAGTTIRVSNPSQAPCTTQAVRLASPVQARML
QSPSPTSSAIQKAITVAPAGASVSVKMTTPQKAQTVITGGQALAKPGAVRPSITFNTAAA
ASASTTPTMVTAPVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKALVQDLLDAK
IEPEEFTTRLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQTLLASTNASALAAASTTT
TSAIRARLPTTVSPATGIVRTPTTCLGVRRPGVQGVQTRMPMVIPQTIRPQGTVARGLTI
IAGRSPVGIGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELV
GTKIRSCRDEAFLPPGLLHRRIMETAKRFGVTEVPAEAVNYISHATQARLRSVLEKVSTI
AQHRTDGGKDEEWYEPSTDVRAQLRFFEQLDRMEKQRKDEQEREVLIKAAKSRARQEDPE
QARLKAKAKEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGSSTSGTEVALGSGAGS
STAASSRQQLRQRITRVNLRDFIFCLEQERVTSRSLLLYKALLK
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagca
gtaagtgacttagttggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acattttccgatatcaaacgagaaggatctacgggcactgtcagccagttctcagggaaa
gtgcgtgatcaagtgggttctctggagccgccacaacaaggacacccaaaagcggtgtta
aacgcggaaccctgcgcgaatcaggcgatttcgaacaagagtatcaccgcttctacctct
tccatcactactgggggcattataaacgctggtaccaatttacaaacacatggagccgca
tctcgcatcatttcccccgcaccaccaggatcggtaactttgcctgctcagacgactagc
tacaacagagggactgttttgggtccagctgaaacatcggcggtgacggctccgaactca
aacctcacaacaacaacggctatcaggacaccttcacctggattacagagttttaacggt
agccccggagctgtgaagttggtcaactcgccagctgctgctccccaaatcgggttaggc
ggcaacactgttataagtactgccagtgcgggcaactcaaatatcattgtgtctatggct
tcacagcctccttctctaccaaactatccggtatctcaatctgctgtggcatttgttact
cccactgttgcattgcaaaggcatcccaaccccatggccagtgcctcacagaatggagta
atagaccctaaggtttctgcagtggtcacacagggtgcaggttctccgggggccaccacc
tctcaggtcatgaaccgcaataacactcttattaacactacaatggtggcacccaaccag
ccagtctctgctggccaatcaatcattctcggagggtctccctctcctgttgttgtgaac
tcacccataagccaggcacagagtgtggcgagtcccactctcgcagccggggtgaaacca
acagttaacggagttggtcagcccacggtgaccatcgtgaggccccccggcgctcctgtg
atggccacctccgtgcagcagcagagacctgggctggtagcgagtcccacgaggactgtg
gcaccacagatggtcgtcagaccaccacagcagaccaccattcagttaccccctggattt
accatacctcccggtatggtgctggtgcgtacagacacaggccagctggtaatggttcct
cagcaggttctagcccaggctcaggctaagacccaacaaggccaggctgctgtctctaac
atctgcccccggcctgctacacctaccgctgggaccaccatcagagtcagtaatcccagc
caggccccttgtacaacccaggctgttcgtctggcctcccctgtccaggccagaatgttg
cagtccccctctcccaccagctctgctatacagaaggcgataaccgtggctcctgcaggt
gcgtctgtgtcggtgaagatgaccacccctcagaaagcccagacagtgatcacagggggt
caagccctggccaagcctggtgctgtacggccctctataacctttaacactgcagcagca
gccagtgcctccacaacccctacaatggtaactgcaccagtctcccaggaaatgcaagaa
aatgtgaagaagtgcaagaacttcctgtccaccctgatcaagctggcgtcccacaactcc
ccatctccagacacatccaagaacgtcaaggccctggtgcaggatcttctggatgctaaa
atcgagcctgaggagttcaccacacgtctgcaggctgagctgaagtcctctccccagccg
tacctcatccccttcctcaagaaaagccttcctgccctgcggctgtccctgctcaacaac
cagcagactctgctggcctccaccaacgcttctgccctggccgctgcctccactactacc
accagcgctatcagggcccggctccccaccaccgtcagccccgccacaggcattgtcagg
acacccaccacttgtctgggtgtgagaagaccaggggttcagggggtccagactcgcatg
ccgatggtcatccctcagaccatccggccacaaggcacagttgcaagaggactcactatt
attgcaggcagatcccctgtgggcattggtgcccaggcctctgccaatcagaagaagctg
aatgagcctggaggcgggacgttcagggatgatgatgacatcaacgacgtggcgtccatg
gcgggggtgaacctgaacgaggagaacgcccgcatcatggccaccaactctgagctggtg
ggcaccaagatccgctcctgtagggacgaggccttcctcccgccaggcctgctacacaga
cgcatcatggagaccgccaagaggtttggggtgacagaggtcccagctgaggcagtgaac
tacatctcccatgccacccaggccaggctgagatccgtgctagagaaagtgtcaactatc
gcccagcaccgcactgacgggggcaaggatgaggagtggtatgagccgtcgacagacgtc
agggcccagctccgcttctttgagcagctggacaggatggagaaacagaggaaggacgag
caggagagggaggtcctaatcaaggctgccaagagtcgcgccaggcaggaggacccagag
caagctcggttgaaggcgaaagctaaagagatgcagcaggcagagcaggcccagatccgg
cagcgtgaagccaacctcactgccctggctgccatcgggccccgcaagaaacgcaagatg
gactcgccagggagctccacatcgggcacagaggttgctttgggttcaggggctggctct
tccacagccgcctcctcccgccaacagctccgtcagcggatcacgcgagtcaatctcagg
gactttatcttctgcctggagcaggagagagtcacatcccggtccttactgctctataag
gctctcctgaagtag
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integrated database retrieval system
