Oncorhynchus nerka (sockeye salmon): 115109658
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Entry
115109658 CDS
T07952
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator-like
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one02010
ABC transporters
one04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
115109658
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
115109658
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115109658
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
115109658
Transporters [BR:
one02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
115109658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
SMC_N
AAA_21
DUF87
AAA_16
RsgA_GTPase
AAA_29
T2SSE
nSTAND3
FtsK_SpoIIIE
AAA_23
MMR_HSR1
Dynamin_N
NB-ARC
ATP-synt_ab
AAA_30
nSTAND1
DO-GTPase2
MeaB
Zeta_toxin
NTPase_1
Fig1
Motif
Other DBs
NCBI-GeneID:
115109658
NCBI-ProteinID:
XP_029490717
EnsemblRapid:
ENSONEG00000019224
LinkDB
All DBs
Position
LG25:complement(38153276..38193781)
Genome browser
AA seq
1519 aa
AA seq
DB search
MQKSPVEDANFLSKYVFWWTSPLLRKGFRKKLDLTDVYKAPSFDLADNLSERLEREWDRE
VASAKKKPRLLRALSRCFLWPFVFYGILLYFGEASKAVQPQLLGRIIASFDPFHAPEREQ
GYYLALGLSLLFITRFLLLQPAIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSAHLNKLDESLGLAHFVWITPLQCILCVGLIWELIEVNGFCALAALTLLGIVQAC
LSQKMGPHRQKRAGMISRRLALTSEIVENIHSVKAYGWEEVMETIIKNIRQDEMSLTRKI
GSLRYFYSASYFFSAILVIVSAIVPHALSKGIILRRIFTTASYCMVLRMTLTRQLPGSIQ
MWYDTLALVTKIEEYLCKEEYKVLEYNLTTTEIELVNVTASWDEGIGELFEKIKQENKAN
GHPNGDAGLFFTNLYVTPVLKNISLYLEKGQMLAVAGSTGSGKSSLLMMILGELVPSEGK
IRHSGRISFSPQTSWIMPGTIRDNILFGLTYDEFRYTSVIKACQLEEDLALLPEKDKTPL
MEGGVTLSGGQRARIGLARAVYKDADLYLLDSPFTHLDIVTEKEIFERCLCKLMSSKTRI
VVTSKLEHLKRADKILLLHNGVCYFYGSFSELQAKRPDFSSLLLGLEAYDNINAERRSSI
LTETLRRVSIDESAVFRGPEPIHQSFRQPPPPIICTNDGPQAITVAGGDGLTAAEKRKQS
IILHPLAPARKFSFIGAGPQKAQAPPPGSTTIEDAVRELSERKFSVVPEDDQVEESLPRG
NQYHHGLQHLSGQRRQSVLQFITNARGEGRREQFQTSFRKKLSITPQCELASELDIYARR
LSKDSVYDISEDVDEQDMEQCFADERENVFDTTSWNTYLRYIFTNRNLVYVLIFIFLVFA
VEVAGSVLGIFLITDKIWTEEANPSAPNFVDQQHANASSPAVQKPVIVTPTSAYYIIYIY
VATSESVLALGFFRGLPLVHTLLTVSKRLHEQMLTAVLRAPMAVLNTMKTGRIMNRFTKD
MATIDDMLPLALFDLIQLTLIVLGAIFTVSIIRPYIFIAAIPLAVIFVVLRKYFLRTGQQ
LKQLEAEARSPIFSHLIISLKGLWTIRAFGRQSYFETLFHKALNTHTATWFHYLATLRWF
LFRCDIIFVFFFSAAVFIAVGTNQDKPGEIGIIVALAMLILGTFQWAVITSITVDGLMRS
VDRVFKFIDLPQEEPRPSGGGGKGTDLVIDNPHAQDCWPNQGHMDIQGLTVKYTEAGRSV
LQDLSFTVEGGQSVGVLGRTGSGKSTLLSALLRLASTDGEISIDGVSWNSVTLQTWRKAF
GVVPQKIFILTGTFRMNLDPHARYSDEELWRVAEEVGLKSVIEQFPDKLDFQLEDGGYVL
SNGHKQLMCLARSILSKARILLLDEPSAFLDPITLQVLRKTLKQSFSNCTVILSEHRVEP
LLECQSFLMIEGSSMKRYDSIQKLLNETSHLKQAMSAAERLKLFPLHRLNSSKRPPQSQP
PKITALQEVAEDEVQNTHL
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcacccgtggaagatgcaaacttcctctccaaatatgtattctggtggaca
tctccactgttgaggaagggcttcaggaagaagttggatttgaccgatgtttacaaagca
ccgtcgtttgatctggcggacaatctttctgaacgactagaaagagaatgggaccgagaa
gtggcatcggccaagaagaagcctcggcttctgcgggcgctctcccgttgtttcctctgg
ccttttgtgttctacggaatcctgctgtactttggggaggcgtcgaaggcagtgcagccc
cagctcctgggtcgtatcattgcctcgttcgacccctttcatgccccagagcgggagcag
ggctactacctggccctgggtctcagtcttctcttcatcactcgcttcctgctcctgcag
ccagccatctttgggctgcaccacctgggcatgcagatacgcatcgctctcttcagcctc
atctataagaagactctgaagctgtccagccgggtcctggacaagatcagcacaggtcag
ctagtcagcctgatgtcagcccacctcaacaagctggatgagagccttggcctggcccac
tttgtgtggatcacccctctgcagtgtatcctgtgtgtgggtttgatctgggaactgatc
gaggtgaatggtttctgtgccctggctgccctcaccctgctgggcatcgtacaggcctgc
ctctcacagaagatggggcctcacaggcagaaaagagcagggatgatcagtcgtcgcctg
gctctgacctcagagatagtagagaacatccactcagtgaaggcctacggctgggaggag
gtgatggagaccatcatcaagaacatcagacaggatgagatgtcattgacgcggaagatt
ggttctctgcgttacttctacagcgcctcctacttcttctctgccatcctggtcatcgtg
tcagccattgtgccacacgccctcagcaagggcattatcctgaggcggatcttcaccact
gcctcctactgcatggtgctccgtatgaccctcaccagacagctgcccggctccatacag
atgtggtatgacacgctggcgctggtcacaaagatagaggagtacctctgcaaagaggag
tacaaagtattggagtacaacctgaccaccactgagatagagttggtgaatgtgaccgcc
tcctgggatgaaggtatcggggagctctttgagaaaatcaagcaggagaacaaggctaac
ggacaccctaacggtgacgcagggttgttcttcacaaacctgtatgtcacacccgtcctc
aagaacatcagcctgtacctggagaagggacagatgctggccgtggctggatccaccggc
tctgggaagagttccctgctgatgatgatcctgggggagctggtcccgtcggaggggaag
atcagacacagtgggcggatctccttctccccccagacctcctggatcatgcccggaacc
atccgtgacaacatcctgtttggcctgacctacgacgagttccgctacacctctgtcatc
aaggcctgtcagctggaggaggatctggccttgctgccggagaaagacaagacgcccctt
atggagggaggggtgaccctaagtggaggtcagagggcgaggataggcctggccagagct
gtgtataaagacgccgacctctacctactggattcaccttttacccacctggacattgtg
actgagaaagagatctttgagaggtgtctgtgtaaactgatgtcttccaagactcgcatc
gtggtcactagtaagctggagcacctgaagagagcggacaagatccttctgcttcacaac
ggagtgtgttacttctacggctccttctccgagctgcaggccaagagaccagacttcagc
tccctgctcctgggcctggaggcctacgacaacatcaacgccgaacgccgcagctccatc
ctcaccgagaccctccgacgcgtctctatcgatgaatccgccgtcttccgtggccccgaa
cccatccaccagtccttccgtcagcccccgccaccgatcatctgtacaaacgatggtcct
caagccatcaccgttgccgggggcgacggtctcacagcagcggaaaaacgtaaacagtca
attatccttcatccgttagcgccggcccgtaaattctccttcatcggtgcggggccccag
aaagcccaggctcctccacccgggtccaccactatcgaggatgccgtgcgagagctgtca
gagaggaagttctcagtggtgcccgaggacgatcaggttgaagagtcgctgccgcggggg
aaccagtaccatcatggcctgcagcacctgagcggacagcgccgccagtctgtgttgcag
ttcatcaccaacgcccggggggagggcaggagggagcagttccagacgtccttcaggaag
aagctgtccatcacgccgcagtgcgagctggcctctgagctggacatctacgcacgacgc
ctgtccaaagacagtgtctatgacatcagcgaggatgtggacgagcaggatatggagcaa
tgctttgcagacgagcgcgagaacgtgttcgacacgacgtcatggaacacctacctgcgt
tacatcttcaccaacaggaacctcgtctacgtcctcatcttcatcttcctcgtcttcgcc
gtagaggttgctggctctgtcctggggatatttcttatcacagataagatctggacagag
gaggccaacccgtcggcgcctaacttcgtagaccagcaacacgccaacgcctcgtcgccc
gccgtccaaaagccagtcatcgtcacgccgaccagcgcctattacatcatctacatctac
gtggcgacgtcggagagcgttctggcgctggggttcttcagaggcctgcctttggtccac
actttactgaccgtgtccaagaggctgcatgaacagatgctgaccgctgtgctcagggcc
cccatggctgtactcaacactatgaagactggtcggatcatgaacaggttcaccaaagac
atggccaccatcgacgacatgcttccccttgcactgtttgacctcatccagttaactctg
atcgtgctgggtgccatattcactgtgtccatcatcaggccgtacatcttcattgccgcg
atcccattggccgtcatattcgtggttctgaggaagtactttctgcgtacgggacagcag
ctcaaacaactggaggctgaggcccgtagccctatattctcccacctcatcatctctctg
aagggtctgtggactatacgtgcatttggtcgtcagtcctactttgagacgttgttccac
aaggccctgaacacccacacggccacctggttccactacctcgcaacactgcgatggttc
ctcttccgctgtgacatcatcttcgtcttcttcttctccgccgcagtcttcatcgccgtg
ggaaccaaccaggacaagcctggggagattggcatcatcgtggccttagccatgctcatc
cttgggacgttccaatgggctgtcattaccagcatcactgtggacggactgatgcgatcg
gtagaccgggtcttcaagttcatcgacctgcctcaagaggagcccagacccagcggtgga
ggtggtaaaggaacagacctggtgatcgacaacccccacgcccaggactgctggcccaat
cagggccacatggacatccaaggactgaccgtcaaatacacagaggctggacgctccgtc
ctgcaggacctctccttcactgttgaaggaggacagagtgtgggtgtgttggggaggacg
ggctcaggaaagagcaccctgctatcggccctcctgcggctggcctctacagacggagag
atctccatcgatggggtctcctggaactcggtcaccctacagacctggaggaaagccttc
ggcgtggtgccacagaaaatcttcatcctgactggtacattccgtatgaacctggatcca
cacgctcgctacagtgacgaggaactgtggcgtgtggctgaggaggtgggtctgaagtcc
gtgatagagcagttcccagacaagctggacttccagctggaggacgggggttacgtcctg
agtaacggacacaagcagctcatgtgtctggcccgctccatcctcagcaaggcccgcata
ctgctgctggacgaacccagcgccttcctcgaccccataacgttgcaggtcctgaggaag
accctgaaacagtcgttctccaactgtacagtcatactgtcagaacacagagtggaacca
ctgctggagtgccagtccttcctgatgatcgagggcagttctatgaagaggtacgactcc
attcagaagctgttgaatgagaccagccacctgaagcaggccatgagtgctgctgagcgc
ctcaaactcttccccctgcaccgcctcaactccagcaagcgaccccctcaatcccagccg
cccaagatcaccgccctgcaggaggtggctgaggacgaggtccagaacacgcatctttaa
DBGET
integrated database retrieval system
