Oncorhynchus nerka (sockeye salmon): 115109685
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Entry
115109685 CDS
T07952
Name
(RefSeq) transcription factor Sox-21-B
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115109685
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115109685
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115109685
NCBI-ProteinID:
XP_029490767
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Position
LG3:37630319..37632691
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AA seq
243 aa
AA seq
DB search
MSKPMDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDE
AKRLRAMHMKEHPDYKYRPRRKPKTLMKKDKFAFPVPYNLGEHDALKVSGLSHGALHESL
LGNPDKAAAAAAAAAARVFFNPSMTTNPYSFFDLGSKMSELSSPSFPYPSLGYPGGTAFS
GTGSVGGTHTHTHSHPAPGNPGYMIPCNCTGWPSAGLQPPLAYILLPGMGKPQLDYPAYA
AAL
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaccaatggatcacgtaaaacgcccgatgaatgccttcatggtttggtccaga
gcgcagagaagaaaaatggctcaggagaacccaaaaatgcacaactccgagatcagcaaa
agattgggagcggagtggaaacttctcaccgagtcagagaaaaggccattcattgacgaa
gctaaacgactgagagccatgcacatgaaggaacaccctgactataaataccgacctagg
cggaagccaaagactctgatgaaaaaagacaagtttgccttcccagtgccctacaatctt
ggagagcacgacgcgcttaaagttagcggtctatctcatggagcacttcacgagtcccta
ttagggaacccagacaaggcagcagcggcagcggcggccgcagcagcgagagtcttcttc
aacccgtccatgaccacgaacccctattcattttttgacctcgggtcgaagatgtcagag
ctttcctctccatcgtttccttacccatctctggggtaccctggtggcacggctttctct
ggaactggtagtgttggtggaacacacactcacactcactctcatccagccccgggcaac
ccaggctacatgatcccctgtaactgtacgggctggccctctgcgggtcttcagccaccg
ctagcctacatcctgctgcctggcatgggcaaacctcaacttgactaccctgcatatgca
gcggcattatga
DBGET
integrated database retrieval system
