Oncorhynchus nerka (sockeye salmon): 115109947
Help
Entry
115109947 CDS
T07952
Name
(RefSeq) rab11 family-interacting protein 1-like isoform X1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115109947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115109947
Membrane trafficking [BR:
one04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
115109947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
DUF4635
Motif
Other DBs
NCBI-GeneID:
115109947
NCBI-ProteinID:
XP_029491056
LinkDB
All DBs
Position
LG26:264623..302249
Genome browser
AA seq
1543 aa
AA seq
DB search
MMSLIELNDDQRWVPTHVNVTVLRARGLRTKGKHGSRYVYTIIQVGKEKYTTGLVEKATV
PEWNEECCFELLPGILEAGGRSAFPSGSGDLVLTVMHRVLIGLDVFLGQAIVPLDKIFQD
GMCPRDEWLKLNSKASRKEKERGEIQVTVQFTRNNMTASMFDLTMKDKPRSTFGKLKDRV
TGRKRGDMESSSAIVPGRFAALSSSLGQPFGEGSGGGEDPGEVEVAEEKRSKVKDFFLGK
GKLRRSSDTRSCSSLASESSMSSTTSESHCPPSLGLGLLVDPPSSPIYSSKVKDTHHRDT
DLAKKVLTTTQSSPKILTHKRAFSDEASRITTTAIPRPCPAVESLKGQGMTLSQSSLCIN
GSHVYGSEPVGPKGSSTLPSKLVLLEKCSPLSRSLQNLTKRSEDKGSAGEGRRWSFDKVK
KDEKDEEKEAEPPVSQFQSARVGGRPVQAAAPMLSSTTTVDSADKGKKLRKTLFSGGRSD
SLPAKSELSQGSPPPEGRLRGWFGSSDSQNKPRLEVSPKVESESDTPPPLPPRSLIPLQC
SSPSASFTGHSSPDSPHPTNPFTPSPSLTPDPISPFNPFLPRMQCNPFFEDLIAEEGQRS
PPFATCSPVTPLCHSTALPCVPSPTHDPAVQIEMAAIWRDRPRPVARQTSLPALLPTPAT
ASPPNPFTSRSISESGGGEWDESFDAFASSRLNSPKGSPTNHPSIATSRQAQVRSTPPYE
SYTIPPIEEMRMSEEEEPPPLPPRRPIIRTLVNERPSDSWLHRGQELAVQKEACLLSQTG
AASLQHTREWGHKRHTPSPHLYPSPGKDLVSSDLLDFHTVHSQHYANMSPESPSPFKSED
EFKKFDYEPLRDEDDKIIFTEQDLWPDATDSIISLASEDTTDASPTVRKYAIVKNTSHSE
LKDLSLPVMLLNSERTFADLLTKSSSKHSKSGLKTLDIASTPPDPTTDSFSIHPDKPTKS
RNNNYESPPLTLEDLNKNKSNSDFCFIDSASDASPSPSDMMTVHTLKSLGGICPQPPQDT
PIALSHEQMMLYAEDMFIFQKTSTIDVNSAVKVNLPEVSSLCQDNCQDGGCELNTSRRDS
ASNMKSISIFTPDSLNIERETVELKDTQSPMDRNGNITKSKIDSSKLDPLCHVRSFPVSS
QMEMQQEVVRNKQEVSQPLAKQTNPVNESSPRGTSSHRSLKGMIRELHGNSGANCPGKGL
GESPLHQSPSPGQIISESIEGPFSYQPTKSPFSSPLSPNRETTLKAALFVSSQKIHTNSS
TQSIPKENCLTEHSSSKYAGAISFEDLHAKVAPNVRSPMSARLRPGTTVHTSNPCASNPS
SATPSLATETNGQAKLPPTPVPPSIHHPPTVRPSTGASATLAVAPYTSSSFSSSSSYTTA
QPLVDARHTLLPEETQPASSLPRQESSPHPVKPLTTTASQGEKKEGRSVLEKLKSSIHPG
RSSQQTLAVAETEKKIEESLADSSAQYEQLTNMELISLLLQQEMDMEKQQVASDQQAVML
EKHEAELKKIKAQVRDLEDYIDKLLVQIMEQTPTLLQVRSRHK
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcacttatagagttgaacgatgaccagagatgggtgcctacacatgtgaatgtc
actgtccttcgtgcaaggggtttgcggacgaagggcaagcacgggagccgttatgtttac
accatcattcaagttgggaaggagaaatacaccaccgggttggtcgaaaaggcgactgtg
ccagagtggaatgaggaatgttgtttcgaacttctccccggaatactggaggctgggggt
cgcagtgcatttccttcagggagcggcgacttggtcctcacggtcatgcaccgggtgctt
atcggacttgacgtgtttcttggtcaagcaatcgtccccctggataaaatatttcaagat
ggaatgtgtcctagagatgaatggctcaaactcaactccaaggccagccggaaggagaag
gagcgtggcgagatacaggtaacggtccagttcacgcgcaacaacatgacagccagcatg
ttcgaccttaccatgaaggacaagccgcgctctaccttcggcaaactcaaggaccgcgtg
acggggaggaagaggggcgacatggagtcctcctcggctattgtgccgggacgcttcgcc
gccctgtcgagttccctggggcagccattcggggaggggagtggagggggagaggacccc
ggggaggtagaggtagccgaggagaagcggagcaaggtgaaggattttttcctgggtaag
ggaaagctgcggaggtcttctgacacgaggtcgtgttcgtcgctggcctcagaaagcagc
atgtcgtccacgaccagtgagagccactgtcccccttctctgggtctaggcctcctggtg
gacccccccagctcccccatctacagcagcaaggtcaaagacacccaccacagagataca
gacctagctaaaaaagtgcttaccaccacacagtcttccccaaagatactgacccacaag
cgagccttcagcgacgaggcgagtaggatcaccacgactgccattccccggccctgtcct
gctgtggagtccctcaagggtcaaggtatgactctctcccaatcctctctgtgcatcaac
ggaagccacgtctatggatctgaaccggtgggtcccaagggctcaagcacccttccatcc
aagctggtcctgctcgagaagtgctcccctctctctcgttcgctgcagaacctcacaaag
cggagcgaggacaagggttccgctggcgagggccggcgctggtccttcgacaaggtaaag
aaagacgagaaggatgaggagaaggaggccgaacctccagtctcccagtttcaaagtgct
cgagtggggggtcggccggtgcaggcagcagccccgatgctgtcttctactaccacggtg
gactcagcagacaaagggaagaagctcagaaaaacgttattctccggagggaggagtgat
tctctacctgccaagtccgagctgagccagggttctcctccccctgaggggagactgcga
ggctggtttggctccagtgactcccagaacaagccaaggctggaagtttctcctaaggta
gaaagcgaatcagacacccctcctcctctcccccctcgctccctcattcccctccaatgc
tcgtctccctctgcttctttcactggccattcctcgcccgacagtccccatccaactaac
cccttcactccctctccctctctgacccctgaccccatctctccattcaaccccttcctc
ccgcgtatgcagtgtaaccccttttttgaggacctcattgcagaagagggccagaggtcc
cccccttttgctacctgctcccccgtcacacccctctgtcattccacagctttgccttgc
gtccccagtcccacccacgatcccgccgtgcaaattgaaatggccgccatatggcgagac
cggcccaggcctgtagccaggcagacgtccctccctgccttacttccgacaccagcgacg
gctagcccccccaatccgtttacgtctcgctccatatcagagagtgggggaggagaatgg
gatgagtcctttgatgcctttgcctccagcagactgaattcgccaaagggctctcctacc
aatcacccttcaatagcaacctcaaggcaagcccaagtaagaagcactcctccatatgag
agttacactattccacccattgaggagatgaggatgagtgaagaagaagagcctccacca
ttgcctccacggaggcccataatacggactctggtgaacgagagaccctctgacagctgg
ttgcaccggggtcaggaactggcggtgcagaaagaggcctgtctcctgtcacaaacaggc
gcagcttccctacagcacacaagagaatgggggcacaagagacacacaccaagtccccac
ctgtacccaagcccaggcaaagaccttgtcagtagtgacctgttggactttcataccgta
cactcacaacattatgccaacatgtctccagagtctccatctccattcaagtctgaagat
gagttcaagaagtttgactatgaaccattacgagatgaagatgataaaattatatttact
gagcaggacctatggccagatgcaacagattcaataatatcgttggcttcagaggatacg
acggacgccagtcccactgtaagaaaatatgctattgtaaagaacacttcacattctgaa
ctcaaagacttatctctgccagtaatgcttcttaatagtgaaaggacttttgccgatcta
ctgactaagtcttcctcaaaacactctaaatcaggtcttaagactctagacattgcttca
actccaccagacccaacaacggactcgttctcaattcacccagataagcccaccaaatcc
agaaacaacaattatgaatcacctccgctaaccttagaagaccttaataaaaacaaaagt
aactcagatttttgttttattgactctgcttctgatgcttccccatctccatctgacatg
atgacagtgcataccctcaaaagtttaggtggcatttgtcctcaacctccacaagatact
cccatagcattatctcatgagcagatgatgctatatgcagaagatatgttcatttttcag
aagactagtactatagacgtcaactctgctgtaaaagtgaacttaccagaagtctcctcg
ctttgtcaagacaattgtcaagatggaggatgtgaattgaatacatcacgcagagattct
gcaagcaatatgaagagcattagcatttttacgcctgacagtcttaacatagagagagag
actgtagaattaaaagacactcaatctccaatggatagaaatggcaacattacaaaatca
aagatagacagttcaaaactagaccctttatgtcatgttagatcttttccagtttcgtcc
cagatggaaatgcaacaggaagttgtacgcaataaacaggaagtgagtcagcctctggcc
aaacaaaccaatcctgtcaatgaatcttcaccaaggggcactagttctcacagaagtctc
aagggaatgatacgagagctccacggcaacagtggtgcaaattgccctggcaaaggatta
ggtgagagccctcttcaccaatcaccgtctcctgggcaaataatctcagagagcattgaa
ggaccgttctcatatcaacccaccaaatctcctttttcctcacctttgtcaccgaataga
gagacaacgctcaaggcagcgttatttgtgtcctcgcaaaaaatacacacaaatagttcc
actcagtcaattccaaaagaaaactgcttaacggaacattcctcatccaaatatgctggg
gcgatcagctttgaagacctccacgccaaagtagccccgaacgtgagaagccccatgagt
gccaggttaaggcctggcaccacagtgcatacttccaacccctgtgcttccaacccctcc
tctgctaccccctccctggcaactgaaactaatggccaggctaagctgccccccacccct
gtccccccctccatacatcaccccccgaccgtgaggcccagtaccggagccagtgccacc
ttggctgtggccccctacacctcttcctccttctcctcctcttcctcctacaccactgcc
cagcccttggtcgatgcacggcacacacttttgcctgaggagacacagccagctagcagc
ctgccccgacaggagagcagcccccacccagtgaagcccttgaccaccacagccagtcag
ggggagaagaaagagggccggtcagttctggagaagctcaagtcttccatccacccaggc
cgctcttcccagcagacactggccgtggctgagactgagaagaagattgaggaatcgtta
gcagacagctcggcccagtacgagcagctgacaaacatggagctgatttcccttctgctg
cagcaggagatggatatggagaagcagcaggtggcctccgaccagcaggcggtgatgctg
gagaaacacgaggcggagctgaagaagatcaaggcacaggtgcgcgacctagaggactac
atcgacaagctgctggtgcagatcatggagcagacacccacactcctccaagtgcgctcc
cggcacaagtga
DBGET
integrated database retrieval system
