Oncorhynchus nerka (sockeye salmon): 115110085
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Entry
115110085 CDS
T07952
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115110085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115110085
03041 Spliceosome [BR:
one03041
]
115110085
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115110085
Spliceosome [BR:
one03041
]
Complex B
Other components
Prp19-related factors
115110085
Complex C
115110085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_12
Suf
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
SNAP
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
115110085
NCBI-ProteinID:
XP_029491288
LinkDB
All DBs
Position
LG26:complement(4169388..4183154)
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AA seq
886 aa
AA seq
DB search
MLRSEHVGGVGKFSNNTYILGYFSLRALILILKTKMPSLNGKPDVMFEEDDLPYEEEIIR
NPYSVKCWMRYIEFKQNGVKSVLNMIYERALKELPGSYKLWYNYLRERRKQVKGKCITEP
SYEEINNCHERALVFMHKMPRIWLDYCQFLVAQCKITRSRRTFDRALRALPVTQHPRIWP
LYLRFARNLPLPETAIRVYRRYLKLSPENAEEYIDYLRSCSKLDEAAVRLAAVVNDESFV
SKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSG
HFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEESMIAAKMETTSELGKDEEEDIDLELR
LARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVKLYEGKPRQIINTYTEAVQTVDPMKA
TGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVNYKQVDDLAGVWCEYGEMELRHENYE
QALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLKVWSMLADLEESMGTFQSTKAVYDRI
IDLRIATPQIIINYAMFLEEHNYFEESFKAYERGIALFRWPNVYDIWNTYLTKFIDRYGG
KKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEEFGLARHAMAVYERATQAVDNTERHH
MFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSRDMCLRFADMESKLGEIDRGRAIYSY
CSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMSSQMMKATT
NATGTISDLAPGQMGLDDMKLLEQQAQLLAAEAEQDKPKLKEKILFVRSDTSRSELAELA
KQANPDEIDIDDEDEDGDEDQGPEEVQLEQKSVPTAVFGGLKEGED
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgctacgttctgaacacgttggcggagtcgggaagtttagtaacaatacatacattttg
gggtacttttcacttcgggcgttaattttgatcttaaaaacaaaaatgccctctctgaat
gggaaaccggacgtcatgtttgaggaagatgacctgccttatgaggaggagatcatcagg
aatccgtactcggtcaagtgctggatgcgctacatcgagttcaaacagaatggcgtcaag
tccgtcctcaacatgatctatgaacgagctctgaaagagctacctggcagttacaagtta
tggtacaactacctgagagagagacggaaacaggtcaaagggaagtgcatcacggagcca
tcctacgaggagatcaacaactgccatgaaagagcactggttttcatgcacaagatgccg
aggatctggctggactactgccagttcctggtggctcagtgtaagatcaccaggagcaga
cgcacgtttgaccgagcactccgagccctgcccgtcactcagcaccctcgcatctggccc
ctgtacctccgctttgcccggaacctacccctgcctgagaccgccatccgtgtctatcgc
aggtacctcaagctgtccccagagaatgcagaggagtacatagattatctgcgttcctgc
agcaagctggatgaagcagcagtgcgactggcagccgttgtcaacgatgagagctttgtg
tccaaggagggcaagtctaactaccagctatggcacgagctgtgtgacctgatctctcag
aacccagacaaggtgaactctctgaatgttggggccatcatccgtggaggcctcactcgt
ttcacagaccagctgggcaaactctggtgctccctggctgactactacatccgcagtgga
cattttgaaaaggctcgtgatgtgtatgaggaggccattttgacggtggtgacggtgaga
gatttcacccaggtgttcgacagctacgcccagtttgaggagagcatgatcgctgccaag
atggagactacctccgagctggggaaagatgaagaagaggacatagacctggagctgcgt
ctggcccgctttgagcagctgatcgcccgcaggcccctcctgctgaacagtgtgctgctc
agacagaacccccacaacgtccacgagtggcataagagggtcaaactgtacgaggggaaa
ccacgacagatcatcaacacctacaccgaggcagttcagactgtggaccctatgaaggct
acagggaaacccagctctctctgggtctccttcgccaagttctacgaggagaacgagcag
ctggacgacgcgcggaccatctttgagaaagccaccaaggtgaactacaagcaggttgac
gacctggctggcgtgtggtgtgaatacggggagatggagctacgccatgagaactacgaa
caggcgctacgtatactgaggaaagcaactgccatcccgtccaagaaggcggagtacttt
gacgtgtcagagccggtgcagaacagagtgtacaagtctctgaaggtctggtccatgctg
gctgacctggaggagagtatgggaaccttccagtccaccaaggcggtgtacgaccgcatc
attgacctgcgcatagccacgccccagataatcatcaactacgccatgttcctggaggag
cacaactactttgaggagagcttcaaggcgtacgagcgcggcatcgccctcttcaggtgg
cccaacgtctatgacatctggaacacctacctcaccaagttcatcgaccgctacgggggc
aagaagctggagagggcccgggacctgtttgagcaagcgctggatggctgtccagccaag
ttcgccaagaccatttacctgctgtacgccaaactggaggaggagtttgggttggcgcgt
catgccatggcggtgtacgaaagagccacgcaggcggtggacaacacggagaggcatcac
atgttcaacatctacatcaagagggctgcagagatctacggcgtcacctacaccagagct
atctaccagaaagccatcgaggtgcttccagacgaacactccagggacatgtgtctgcgc
ttcgctgacatggagagcaaattgggcgagatcgaccggggacgagccatatactcctac
tgctctcagatctgtgacccaaggatgacggccacgttctggcagacatggaaggagttt
gagatccgccatgggaacgaagacactatccgggaaatgctgaggatcaagcgtagcgtc
caggccacgtacaacacacaggtcaacttcatgtcctcacagatgatgaaggccaccacc
aacgccaccggcaccatctcagatcttgccccgggccagatggggctggatgatatgaag
ctgttggagcagcaggcccaactgctggccgccgaggctgaacaggacaaacccaaactc
aaagagaagatcctcttcgtcaggagtgacacatcacgcagcgagctggctgaactggcc
aaacaagccaaccctgatgaaattgatattgatgatgaggatgaggatggtgatgaagac
cagggccctgaggaggtgcagctggaacagaagagcgtccccaccgctgtctttggaggg
ctgaaagaaggagaagattga
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