Oncorhynchus nerka (sockeye salmon): 115110399
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Entry
115110399 CDS
T07952
Name
(RefSeq) zinc finger BED domain-containing protein 6-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115110399
04121 Ubiquitin system [BR:
one04121
]
115110399
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
115110399
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
115110399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
hAT-like_RNase-H
DBD_Tnp_Hermes
DUF659
DUF5371
Motif
Other DBs
NCBI-GeneID:
115110399
NCBI-ProteinID:
XP_029491868
LinkDB
All DBs
Position
LG26:14755473..14759950
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AA seq
649 aa
AA seq
DB search
MTEFKRAFSLVWDHFTLVTPNKVQCALCSQRLSFNKNTSAMLRHLRSRHPSEAWYSNSTS
GAHSSTSNSTSGVHSTFSNSIISGSGVHSSFFGTTGLNSMFTNSAAAGHHIQVRTTRQED
LDDALVNMLVKDTQPFSVVEEEGFTAFVQKLDPSYNLPNKQALKKMVGSRCEFINDNVVS
QMVISDFVSLTSDMWTSIDKHSSISVTGHLVAENAQLSTFLLGISKLPENHKVIHIEEAK
NQLVASWGLHSRVAAFVTENSENMVATVQKLGILQLPSFAHVLNLVIKRSMEATLELQDI
RSQARAIVSFFKSNQNAEMRLAEVQGQLGRPEQKLIQEVDSRWNSSFSMLERIFDQRESV
AAALSTLDTDIIPLGSADYEVIHQCLGVLGSFNQATAELASEKRVSASKVIPLVRMLKIT
LEKKHGAIIHSTATQLASNLQRELQTSCSMVETEPILALSALLDPRFKMLAFGNQGYAQE
AVKLLTSECASLIRINPDKDDILPPSTTRSTTPSLTSPHTSSWAMETASISMATSPSKSH
DGGLWEMFDSKVGETQSVQSSTADAAVEVQHYLSDPYLNRVENPMHYWEKHSKVYPHLFQ
LARKYLSVPASSVPCERIFTKAGDVFNKKRSCLSMKAVEQIMLLNKGLV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatttaagagagccttctcactggtgtgggatcacttcaccctagtgacaccc
aataaggtccagtgcgccctctgttcacaacggcttagcttcaacaaaaacacctccgcc
atgttaaggcacctacgatcaaggcacccaagcgaggcttggtacagcaactcaacatct
ggggcccactcaagcacaagcaactcaacatctggagtccactcaacgttctcaaactca
ataattagtggttctggagtccactcatcgttctttggtactacaggactaaactcaatg
tttacaaacagtgctgctgctggacaccacatccaagtcaggaccaccagacaagaggac
ctggatgatgccctagtcaacatgttggttaaagacacccagccattttcagtagtcgag
gaagaaggattcactgctttcgtccaaaagctagacccaagctacaatcttccaaacaag
caagcactgaagaaaatggtggggtctcggtgtgaattcatcaatgataatgttgtatct
cagatggtaatttctgactttgtcagcctgacttcggacatgtggacatctatagacaag
cacagttccatttcagtgacggggcatttggtagcagaaaatgcccagctatccactttc
ctccttgggatttctaagctgcctgaaaaccacaaagtgatccacattgaggaggccaaa
aaccaactggtggcgagctggggcctccacagcagggtcgctgcatttgtcacagagaac
agcgaaaatatggtagccacggttcagaaattaggaatcctccagttgccctcttttgca
cacgtcctgaaccttgtgattaagaggtccatggaggctactttggagctgcaggacatc
cgctcccaagcgcgggctatcgtgtctttcttcaagtcgaatcagaacgcagagatgagg
ttagccgaggtgcaagggcagctaggcaggccggagcagaagctgatccaggaagtggac
tcgagatggaacagtagcttttctatgctggaacgcatctttgatcagagggagtctgtg
gctgctgctctcagcaccctggacacggacatcatccctctgggatctgctgactacgag
gtcatccaccagtgtctcggagtgctgggttccttcaaccaggccacagccgagctcgcc
tcagagaaacgcgtctcggcttccaaggtcattcctcttgtccggatgctgaagataacc
cttgagaagaagcacggtgccatcatacactctacagctacacagctggcgtctaacctg
cagagggagcttcagacgagctgcagtatggtggagaccgagccaatcctggctctctcg
gctctcctagacccgcgcttcaaaatgttggccttcgggaaccaaggctacgctcaggag
gcggtgaagctcctcacctctgagtgcgcctcattaatccggataaatcccgacaaggac
gacattctaccaccctccaccaccaggtcgacgacgccctccctgacatcaccccacacc
tcctcctgggcaatggaaaccgcttccatctccatggcaacatctccgtctaagtcccac
gatgggggtctgtgggagatgtttgacagtaaagtgggtgagacacagagcgtccagagc
agcacggcggacgcagcggtggaggtacaacactacctcagtgacccgtacctgaaccga
gtggagaaccccatgcactactgggagaagcactccaaggtgtacccgcacctgttccag
ctggctcggaaatacctcagcgttcccgcctcgtctgtgccatgcgagcgcatattcacc
aaagctggagatgtgttcaataaaaagaggagttgcctcagtatgaaggctgtagagcag
ataatgctgttgaataaaggtctcgtatag
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