Oncorhynchus nerka (sockeye salmon): 115110427
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Entry
115110427 CDS
T07952
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115110427
03036 Chromosome and associated proteins [BR:
one03036
]
115110427
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115110427
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115110427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
115110427
NCBI-ProteinID:
XP_029491935
LinkDB
All DBs
Position
LG26:15648550..15670769
Genome browser
AA seq
1924 aa
AA seq
DB search
MEDKKKKKEDKKKRESSQKVTEQKVKVPELTKATSTQSLATPGSVSPSPGPTPPSSPCPA
TGFAVPTGGNNANRAAVANGQPPTGTQRYMPREVPPRFRCQQDHKVLLKRGQPPLSCMLL
GGGSCRGDTPPLSQGDAPSATTSGSTDPNLGSPSPPHSSPSSSVAASSTYANSTWGVGSG
SQPPFQGWEKVIVDGSDLEEWPSIVGEDRVGTEGAELDGPNNSSASRTDKCTQQHLRAGA
GSSDSPSPSHSSPSSLTECVLSGVVWGSSSQPGIGVAAAATEGLVLNNSKVSFLPGAQES
PLSGIPGANFNPNANPSAWPALVQDGTTGVGAATTEAVPSSITTSFSASTTHTHPLSFVN
QASHQHQLHEMPARDGAHLHGDWGGLGPELGEGPNQGGRELVDSGVVGESGNLSASSSSS
TTSSSSWRALPPPSNLNTGASKTDGWDRLSGDAAQGEEANVWGFGSQAEKAGLAGDEAWV
RGSDVSSNTPVVSQGAWDGATEEGWGGTQRSTGVRGSSNPAIGSSGGGESSSSSGGDGGI
SQDSASPTFATMTTAWDNQKGVGAVGEWAGQGGRGSGGPSCSSGGGSRAGSHNRHQEHSR
HRSSNPPPNPEVALQSMLSRSDLDPRVLSNTGWGQIQVQQNVAWDLDTGSASQNEGSSSP
AFPSQAVNSTGRSSTYPASNSTMTTDPSAGAHMPTMNIGPGPVPSKGGWDDESNCAPPSN
MRNSDSSRMPVEDINGSQGKTSGAWGDVGTSESHGKGWGSEEREGRDRRGGGGSNWRDFG
ERGGGRGSGWGSGQEDKGTAGGWKEMGREGGGWEQRGGGNWAQREPKTVSGGWGEGRGRS
GGNTDKGFWGNIDEGGPQRSWGSGGDMGGKPHQDWCMKPHSAQIPNSQAATLKDPNKQQH
QSQTQQPPGGLGRSGGPPTQNQNQSSGWTADPIPQNPVGPAEAPEPSGWEEPSPQSISRK
MEIDDGTSAWGDPTCYNSKNVNLWDKNSAPSGPPPTLQGQTQQGPPTSVQQPPPRRQPAI
PANRDSNPGNAPGMGPGMWGGGGNLVGQSVDNGTASWGQTSAAPSGWGDSDNSSKAAGWG
NPSSKSCSKSVQESWGKGEGPVPASRHSSWDEEEDVGGVWNSTGSQISSNYNSGGWGQGP
GGKRGNSKGGGGDNWMNPMTRQFQNMGLMGEDLSLDKKLEGDKRGMNDYSGEMRRGGRGG
GYRMPSSKDMGPGDMGPYSEKMGSHGLFGGSGGMPPSRGMHQPGMHPMNPSQGLRGQVPH
QFLSAQVPGPMLKQIPSPGSSVGGVGVGGGVFPPQLSPQQLAMLSNIYPHVQQFHLACQL
LLQQQQQQQLLQNQRKLPQPIRQQPDPQQLARIMAILQQQRQQQQGVVGGGSGSSKLSPS
LGGAPKQPMTDSMPHPGMGGPLSDLHAKTQGMYSGLAPGGNLSGLELGSMVGGMKDGGGQ
QSRFKWMMEGHSPAPSPPDTAHHKNGPLPMAMKVREGSPYSQYELLGVDDLGMPPQGPSD
NWHRTPGSKMGTMAGTSSWPPEFQPGVPWKGIQSADPESDPYMTPGSVLGSHGPSSLSDS
DHQLLRDNTGPNHSLNTLLPSPGAWPNSASDSPHGNAHSTAKYSEYKPSWPPEPIGHNKP
WKTSHIISQLPRPPPGLTSQKPASTSPWSSGAPRLARGWGEGGGSQESRFGTGSAWSDGV
ASRGSCWLLLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALIRYSTRQEAAKAQGA
LHMCVLGNTTILAEFVSEEEVARYFAHSQVGGAEGASPAAGAAQGSSGTRTAVGNRGGSP
GSERAAIGAGNNLGGNSGGGVVLGSVGPSGWQSLDGTGSSPEATLAQGPGLGIFAQWSAN
GAGKGVGGGVGRVEGGRSGLWGGVTPGYSSSSLWGAPQMEDRHQMGSPAALLPGDLLGGG
ADSI
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaagaagaaagaggataaaaagaaaagggaatcttcccagaaggtg
actgaacaaaaagtcaaagtgcccgaattaaccaaggccacctccacgcagtcactagcc
actcctggctctgtgtctcccagccctggccccactccaccatcgtccccctgccctgca
actgggttcgctgttcctacgggcgggaacaatgcaaaccgggcggctgtggccaacgga
cagccccccaccggaactcagcgctatatgcccagagaggtgcccccacgattccgctgt
cagcaggaccacaaagtgcttctgaagaggggccagccaccactgtcctgcatgctgctg
gggggaggcagctgtaggggagacacaccccctctttcacagggagatgcccccagtgca
accacatctggatccacagatcccaatctgggttctccttcacccccccactcctcaccc
tcatcttcagtcgctgcttcttcaacttatgcaaattccacatggggggtgggctctggc
agccagcccccttttcagggctgggagaaggtgatagtggatgggagtgaccttgaagag
tggcccagcatcgtgggtgaggatagagtgggtaccgagggagcagagctggatggcccc
aacaacagcagtgcctcacggactgacaaatgcacccaacagcatctgagggcaggagct
gggagttcagatagtccctccccatcccactcttccccctcgtcactcactgaatgtgtc
ctgtctggtgtcgtgtggggctcttccagtcagcctggaattggagtggcagctgcagca
acagaggggctagtgctcaacaattccaaagtctcctttcttcctggggctcaggagagc
cctctcagtggaattcctggtgccaacttcaaccctaatgccaacccttcagcctggcct
gcccttgtgcaggatggaacgacaggggttggtgcagctaccactgaagctgtgccctca
tccatcacaacatccttctctgccagtaccacccatactcatccactctcctttgtgaat
caagctagccatcagcaccaactccatgaaatgcctgccagggatggagcacatctccat
ggggactgggggggcttggggccagagcttggagaaggaccaaatcaaggaggcagagaa
cttgtggacagtggggttgttggagagagcgggaatctctctgcttcgtcatcctcctcc
acaacctcttcctcttcatggcgagccttgcctcccccctctaacctcaatacaggtgcc
tctaagactgatgggtgggacagattaagtggagatgcagctcagggggaggaggcaaac
gtgtggggcttcggcagccaagctgagaaagctgggttggcaggagatgaggcatgggtc
aggggaagtgatgttagctcaaataccccagtggtatctcagggagcatgggatggggct
acagaggagggttggggcggtacacagaggtcgacaggtgtcaggggttccagcaaccca
gcaataggaagtagcggtggaggcgagagcagcagcagcagtggtggtgatggcggcata
tcccaggattctgcctcaccaacatttgctactatgacaacggcttgggacaatcagaaa
ggggttggtgctgtgggggaatgggcaggtcaaggtggcagaggaagtggaggcccctca
tgctctagtggaggggggtccagggctgggagtcacaatcggcaccaggagcattcccgc
caccgctccagcaacccaccccccaaccctgaagtggccttacagagcatgctcagccgg
tcggatctggatcctagggtgttgtccaacaccggatgggggcagatccaggtacagcag
aatgtggcctgggacctggatacaggatcagccagtcaaaatgagggaagcagttcccct
gcatttccatctcaagccgttaattctactggtcgatcttctacttaccctgcaagcaac
agcacaatgactactgatccatctgctggggcccacatgcctactatgaacattggtcct
ggccctgtaccttcaaagggcggctgggatgacgagtcaaattgtgctccaccatccaac
atgcggaattctgattcctccaggatgccagtggaagatattaatggcagccagggaaag
acaagtggagcctggggcgacgttggtacttcagagagccatggcaaaggctggggcagt
gaggagcgggaggggagagaccgcagagggggcggaggaagtaactggagagattttgga
gaacggggtggtggaagagggagtggctggggaagtggtcaggaggacaaggggactgca
gggggttggaaagagatgggtagggagggaggtggatgggaacaaagagggggcggcaac
tgggcgcagcgtgaacccaagacagtcagtggaggctggggggaaggtaggggcagaagt
ggaggcaacacagacaagggattttggggtaacatagatgagggaggcccacagaggagt
tggggaagtggaggtgacatgggtggcaaaccgcaccaggactggtgcatgaagccgcat
tcagcacagataccaaacagccaagcggcaacactgaaagacccaaataaacagcaacac
caatcgcagacccaacagccaccaggaggtttgggcaggtcaggaggtcctcccacccag
aatcagaaccaaagctcaggctggactgctgaccccatccctcagaaccctgttgggcct
gctgaggcccctgaaccaagcgggtgggaggagccctcccctcagtccatcagccgcaag
atggagattgacgatggcacttcagcctggggagatcccacctgttacaacagcaagaat
gtgaacctgtgggacaaaaatagtgccccctctggtcctccaccgacacttcaaggccaa
actcaacagggtccacctacatctgtacaacagccaccaccaaggagacagcctgcgatc
ccagctaaccgggactcaaaccctggcaatgcacctggaatgggcccaggtatgtgggga
gggggtggcaacctcgttggacaatctgtggataatggcaccgcttcctgggggcaaact
tctgctgcaccatctggctggggagactcagataactcaagcaaagctgctggttgggga
aacccctcatctaaatcttgctcaaagtcagtgcaagagagctggggcaaaggagagggc
ccagttccagcctctcgacactccagttgggatgaggaggaggacgttggtggagtttgg
aacagcacaggctcacagatcagcagcaactacaactctggtggctgggggcaaggccct
gggggaaagagaggcaacagcaagggtggaggtggagacaattggatgaacccaatgaca
cgacaattccaaaatatgggactcatgggcgaggacttgagtcttgataaaaagttggaa
ggagataagagagggatgaatgactacagcggtgaaatgcggagaggaggaagaggtgga
ggctaccgtatgcccagttccaaagacatggggcctggagacatggggccttacagtgaa
aagatgggtagtcatggtttatttggtggcagcggtgggatgcctccatctcggggaatg
caccagcctgggatgcatcccatgaacccctcccaagggttacgcggacaagtccctcat
caattcttgtctgcgcaggtgccgggcccgatgctaaagcagataccctctcctggcagc
agtgttggaggagtaggtgtcggaggaggggtgttcccacctcagctctccccacagcaa
cttgccatgcttagtaacatttacccccatgtgcagcagttccacctggcttgtcaactt
cttctgcagcagcaacagcagcagcagctcttgcagaaccagaggaagttgccccagcct
atacgccagcagcctgatccacagcagctggctagaatcatggctattctgcaacaacag
agacagcaacaacagggagtggtgggcggaggcagtgggagctccaaactgtccccatct
cttggaggggcaccaaaacagccgatgacagactcgatgcctcaccctggtatgggtggc
cccttgtcagatcttcatgccaaaacacaggggatgtactctgggcttgctcccggaggc
aacctgtctgggctggagttgggctccatggtgggggggatgaaggatggaggagggcag
cagtcccgcttcaaatggatgatggaaggtcactctccggccccttctcccccagataca
gcccatcacaagaatggtcctttacccatggccatgaaagttcgagagggctccccatat
tcacagtatgagttgctcggggttgatgatttgggaatgccccctcagggcccttctgac
aactggcaccgtacccctggaagcaagatgggcaccatggctgggacatccagctggccc
ccagagttccagcctggagtgccctggaaaggcatccagagtgctgacccggagtctgac
ccttacatgacccctggcagtgttctgggctcccatggaccctccagcctcagtgactct
gaccaccagttactgcgagacaacacagggccaaaccactccctcaacaccttgctgcct
tcaccaggtgcctggcccaacagtgcctcagacagcccccatggcaatgcacacagcaca
gcaaagtactcagagtacaaacccagctggcccccagagcccatcggacacaataagccg
tggaagaccagtcacatcatttcccagctgccacgcccccctcctggactgaccagtcag
aaaccggcctcgacatccccatggagcagcggagccccgcgtttggccaggggctgggga
gagggcgggggcagtcaggagtcaagatttgggacaggctcagcgtggagtgatggtgtg
gcctccagaggcagctgctggctactgctcagcaacctcacccctcagatcgatggttcc
acactacggactatctgtatgcagcacggccccctgctgacctttcacctcggcctgacc
cagggcagcgccctgattcgctacagcacacgtcaggaagcagccaaggctcagggtgca
ctgcacatgtgtgttctgggaaacaccacaatcctagcggaatttgtgagtgaggaggaa
gtggctcgctattttgcacattcccaggttggaggtgcggagggggccagcccagcggca
ggggcagcccagggctcgtcaggaacacgcacagcggtgggcaacagagggggctccccg
gggagtgaacgagcagcaataggagcaggaaacaatttgggtgggaacagcgggggagga
gtggttctgggtagtgtggggccttccggctggcagagtttggatggaacaggcagctct
ccagaggccaccttagcccaaggtcctgggcttggtatttttgctcagtggagtgccaac
ggggctgggaaaggggtagggggtggggtgggacgggtagagggagggaggtctgggctc
tggggtggtgtgacaccaggttactccagcagcagcttgtggggtgcaccccaaatggag
gacaggcaccaaatgggcagcccagctgccctgttgcctggtgacctgctgggaggaggg
gctgactccatctga
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