Oncorhynchus nerka (sockeye salmon): 115110606
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Entry
115110606 CDS
T07952
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115110606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115110606
03036 Chromosome and associated proteins [BR:
one03036
]
115110606
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115110606
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
115110606
Chromatin remodeling factors
BAF complex
115110606
PBAF complex
115110606
GBAF(ncBAF) complex
115110606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
115110606
NCBI-ProteinID:
XP_029492271
LinkDB
All DBs
Position
LG26:20211217..20243074
Genome browser
AA seq
1630 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMRGPSPSPGSAHSMMGPSPGPPASGHSHPQQGPS
GYPQENMHQMHKPMEVMHEKGMSDDPRYGPMKSMGMRPGGGHIGMGPPPSPMDQHSQGYP
SPLGGSEHSPSPVPANGPPAGPMMPSGPGVPMEGSDPQSMGQQNRVGVPGPSGGSGPGGV
GPGGPTPFNQNQLHQLRAQIMAYKMLARSQPLPDHLQMAVQGKRPMPGMQQQPGMPNMPP
SSGPGAGPGQPPANYNRPHGMVGPNMPPPGPSGVPPGMQGQPTNGPPKQWPEGPMVNAAA
PSSAPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPLQPPPMVLHQKQNRITPI
QKPRGLDPVEILQEREYRLQARITHRIQELEHLPGSLAGDLRTKANIELKALRLLNFQRQ
LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEY
LNSILQHAKDFKEYHRSITAKLQKATKAVATYHANTEREQKKENERIEKERMRRLMAEDE
EGYRKLIDQKKDKRLAYLLQQTDEYVANLTDLVRAHKADQALKDKKKKKKKKKKPESGEG
QPPALGPDGEPLDETSQMSDLPVKVIHLDSGKILTGLDAPRAGQLDTWLEMNPGYEVAPR
SDSEDSGSEEEEEEELEPQPSQAPTEEKKKIPDPDTEDVSEVDVRYIIEGAKQDVDDEYN
SAEAAFARGLQSYYAVAHAVTETVDKQSTLLVNGQLKHYQIKGLEWLVSLYNNNLNGILA
DEMGLGKTIQTIGLITYLMEHKRINGPFLIIVPLSTLSNWVYEFDKWAPTVVKVSYKGSP
QARRAFLPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTVVLN
THYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCTTFEQWFNAPFAMTGEKVDLNE
EETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLL
TDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFTGGVVSGPDLYRA
AGKFELLDRILPKLMVTGHKVLLFCQMTSTMTIMEDYFGWRNFKYLRLDGTTKAEDRGML
LKTFNDPASQYFVFLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQRNE
VRVLRLCTVQSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE
VGAPGGWRAGGALEEDEVPDDETVNQMIARSEEEFDQFMRMDLDRRREDARNPKRKPRLM
EDDELPTWIIKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEDGNLE
DLEEEVRHKKTTRKRKRDRDDMPGSATPSSSGGRSRDKDEEVKKAKKRGRPPAEKLSPNP
PSLTKKMKKVVDTVIKYKDGSNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIR
SHKYRSLNDLEKDVMLLCSNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEEESEGEES
EEEEEEVDEGSESESRSVKVKIKLGRKEKEGRGKGQRRRGRGSRAKPVVSDDDSEEEQEE
AGSVSGSEED
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccagacccccccatgggagggacgcctcggccgggcccctccccaggaccg
gggccttctccaggagccatgaggggacccagcccttccccaggctctgctcatagcatg
atgggacccagcccaggtcccccagcctctggacactcccacccacaacaggggccctca
ggatatcctcaggagaatatgcatcagatgcacaaacctatggaagtcatgcatgagaag
ggcatgtctgatgaccctcgctatggaccaatgaagagcatgggcatgagaccaggtgga
ggccacattggaatgggaccccctcctagccccatggatcaacattcacaaggctacccc
tctccactggggggatctgagcactctcccagccctgtgccagccaacggccctcccgct
ggccccatgatgccctctggcccaggtgtccccatggagggcagtgacccccagtccatg
ggccagcagaaccgtgttggggtcccaggtccaagtggtggttctgggccaggtggggtt
gggcctggtggacccacccccttcaaccaaaaccagctacaccagctcagggcccagatc
atggcctacaagatgctggctcgcagccagcccctaccagaccacctgcagatggctgtg
cagggtaagcggcccatgccagggatgcagcagcagccagggatgcccaacatgccccct
tcctctgggcctggagcggggcctggacagccaccagcaaactacaacagacctcatgga
atggtaggcccaaacatgcctcctccaggaccctcaggtgttcctcctggtatgcagggc
cagcccaccaatggaccccctaaacaatggcccgaagggcccatggtgaatgctgctgct
ccatccagtgccccccagaagctgattccccctcagcccactggcagaccctctcctgct
cccccctccgtaccccctgctgcctccccggtaatgcccccccagacccagtcccctggg
cagcccctccagcccccacccatggtgctgcaccagaaacagaaccgcatcacgcccatc
cagaagccccgtggcctggacccagtagagatcctccaggagagagagtacaggctgcag
gctcgtatcacccaccgtatccaggagctggagcatctaccagggtctctggccggagac
ctgcgcaccaaagccaacatcgagctcaaggccctaaggctgctaaatttccagagacag
ctgcgtcaggaggtagtggtgtgtatgcgtcgtgacactgccctagaaacggccctcaac
gctaaggcctacaagcgcagcaagcggcagtccctccgtgaggcccgcatcacagagaaa
ctggagaagcaacagaagattgaacaggagcgcaaacgacgccagaaacaccaggaatac
cttaacagcatcctgcagcatgctaaagacttcaaggagtaccaccgctccatcacagcc
aagctccagaaggccaccaaagctgtggccacgtaccacgccaacactgagcgtgagcag
aagaaggagaacgagcgcattgagaaggagagaatgaggaggctgatggctgaagatgag
gagggctaccgtaagctgattgaccagaagaaagacaagcgcctggcctacctgctgcag
cagacagatgagtacgtggccaacctcaccgacctggtcagagcccacaaggctgatcag
gccctcaaggataagaagaagaagaaaaagaagaagaagaagccagagagtggggagggc
cagcctcctgccctgggacctgacggagagcctctggatgagaccagtcagatgagtgac
ctgcctgtgaaggtgatccatctagatagtgggaagatcctgacggggctggatgcgccc
cgggctggccagctggacacctggctggagatgaaccctgggtatgaagtggctcctcgt
tcagacagcgaggacagtggctcagaggaagaggaggaggaagagttggagccccagccc
tcccaggctcccaccgaggagaaaaagaagatcccagaccccgacacagaggacgtgtcc
gaggtcgacgtccgctacatcatcgaaggggccaagcaggatgtggatgatgagtataac
agtgccgaggcggcgttcgcccgaggcctgcagtcatactatgctgtggcccacgccgtc
actgagacggtggacaaacagtccacgctgctggtcaacgggcagctcaaacattaccag
atcaagggcttggagtggctggtgtctctgtacaacaacaacctgaatgggatcctggct
gatgagatgggtctgggcaagaccatccagaccatcggcctcatcacctacctcatggag
cacaagcgcatcaacggccccttcctcatcatcgtgcccctctcaactctgtccaactgg
gtgtatgagtttgataagtgggctccaacggtggtgaaagtctcttacaaaggctcccca
caggctcgccgggcattcctccccatcctgcgcagcggcaagttcaacgtactgctcacc
acctacgagtacatcatcaaagacaagcaagtgctggctaagctgcgatggaagtacatg
atagtggacgagggccaccgtatgaaaaaccaccactgtaagctgactgtggttctgaac
acccactacctggccccgcggcgtctgctgctgaccggcaccccgctgcagaacaagctg
ccggagctctgggccctgctcaacttcctgctgccgaccatcttcaagtcctgcactacc
ttcgagcagtggttcaacgcccccttcgccatgaccggagagaaggtggatctgaacgag
gaagagaccatcctgattatccgtcgtttgcacaaagtgctccgccccttcctgctgcgc
agactgaaaaaggaagtggagtcccagctgcctgagaaggtggagtatgtgatcaagtgt
gacatgtcggccctgcagagagtgctgtacagacacatgcaggctaagggtgtgctgctc
accgacggctctgagaaagacaagaagggtaaaggaggcaccaagaccctgatgaacacc
atcatgcagctgaggaagatctgtaaccatccctacatgttccagcagatcgaggagtcc
ttctctgaacatttgggattcactggaggcgtagtgtctggacctgacctgtaccgcgcc
gctgggaagtttgagctgctagaccgtatcctgcccaagctgatggtcaccggccacaag
gtcctgctcttctgtcagatgacttccaccatgaccatcatggaggactactttggctgg
cgcaactttaagtacctgcgtctggacggaaccaccaaggctgaggatcgtgggatgctt
ttgaagaccttcaatgaccccgcctctcagtactttgtgttcctgctcagcaccagggcc
ggcgggctgggcctcaaccttcagtctgctgacactgtggtcatttttgactctgactgg
aatccacatcaggatctgcaggcccaggacagagcccaccgtatcgggcagcggaacgag
gtgcgtgtgttgcgtctctgcaccgttcaaagtgtggaggagaagatcctggcggcggcc
aagtacaagctgaacgtggaccagaaggtcatccaggccggcatgttcgaccagaagtcg
tcgagtcacgagcgccgtgccttcctgcaggccatcctggagcatgaggaacaggacgag
gtcggggccccggggggctggcgcgctgggggggcgttggaggaggacgaggtgcctgat
gatgagaccgtcaaccagatgattgccagaagcgaggaggagtttgaccagttcatgcgt
atggacctggaccggcgccgcgaggacgcccgcaaccccaagagaaagccccgtctgatg
gaggatgacgagctgcccacctggatcataaaggatgatgccgaggtggagaggctcacc
tgtgaggaggaggaggagaagatgtttggtcgcggctctcgccagcgcaaggaggtggac
tacagtgactcactcacagagaagcagtggctcaaggccatagaggacggtaatctggag
gacctcgaggaggaggtgcgtcacaagaagacgacccggaagcgcaagcgagaccgtgac
gacatgcccggctcggccacgcccagctccagcggtggtcgcagccgtgacaaggatgag
gaggtaaagaaggccaagaaacgtgggcgccctccggctgaaaaactgtcccctaacccc
ccatccctcaccaagaagatgaagaaggtggtggacactgtcatcaagtacaaggacggc
agcaatgggcgccagctgagtgaagtcttcatccagctgccctcccgcaaggagttgcct
gagtactacgagctcatccgcaaacctgtcgacttcaggaagattaaggagaggatccgc
agccataagtaccgcagcctgaatgacctggagaaggatgtgatgctgctgtgtagtaac
gctcagaccttcaacctggagggctctctgatctatgaggactccatcgtactgcagtca
gtcttcaccagcgtccggcagaagattgaaaaggaggaggagagtgagggagaggagagt
gaggaagaagaggaggaggtggacgaaggctctgagtctgaatctcgttcagtgaaggtg
aagattaagctggggaggaaggagaaggagggcagagggaagggccagcgccggaggggc
cgtggctcccgggccaaacctgtagtgagcgacgacgacagcgaggaggagcaggaggag
gcgggttcggtcagcggcagtgaggaggactga
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integrated database retrieval system
