Oncorhynchus nerka (sockeye salmon): 115110643
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Entry
115110643 CDS
T07952
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115110643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115110643
03009 Ribosome biogenesis [BR:
one03009
]
115110643
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115110643
Spliceosome [BR:
one03041
]
Complex A
U1 snRNP components
U1 related factors
115110643
Complex B
115110643
Ribosome biogenesis [BR:
one03009
]
Eukaryotic type
Pre-60S particles
Helicases
115110643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
115110643
NCBI-ProteinID:
XP_029492326
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All DBs
Position
LG26:21129575..21135025
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AA seq
616 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGKFGNPGDRLRKKHWNLDELSKFEKNFY
QEHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTNM
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEITR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRGG
HSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGASG
FDKSGNGFGGGYGTNGQSNYGASQAGVFPTQNFQAPQFSANQGGAQSGMSHQQFPFTQQQ
APQPMVPYPMPPQFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttctgacagagatcgtggtagagatagaggatatggcagtggaccacct
cgttttggaggcggtggaagaggtggtggtggtggggggaagtttggtaatcccggtgat
cgactgcgcaagaagcactggaaccttgacgaactctctaaatttgaaaagaacttttac
caagagcacccagatgttactcggagatctccgcaagaggttgcacagtacagaagtact
aaagcggttactgtgaaggggagggactgcccaaatccaattatgaagttccatgaagcc
agttttccaacctacgtgatggatgtcattaataaagcaggctggtcagaaccaacaccg
atccaagcacagggttggccactggctttgagtggcaaggacatggttggtattgcacag
acgggctctgggaaaactctctcgtacttgttgccagcaatcgtgcacattaatcaccag
cctttcctggaacgtggagatggccctatttgcttagtgcttgccccgacccgtgagctg
gctcagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctgaagtctgtc
tgtgtttatgggggtgcgcccaaagggccacagctccgtgacctggatagaggtgtggag
atttgcattgccacacctggcaggcttattgacttcctggaagcaggaaagaccaacatg
cgcagatgcacttacctggtactggatgaggctgaccgaatgctcgatatgggattcgaa
ccacaaatccgaaaaattgtggaccaaatcagacctgaccgacagacgctgatgtggagt
gccacttggcccaaagaggtgcgccagctggcagaggacttcctaaaggactacgtccag
atcaatgtgggagctttgcagctgagtgccaaccacaacatcttgcagatcgtggatgtt
tgcaatgatggcgagaaagaagacaaactcctccgccttctagaggagatcatgagtgag
aaggagaacaaaaccataatctttacagagaccaagaggagatgtgacgagatcactagg
aggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcaggag
agggactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccacagat
gtcgcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactacccc
aacaactctgaggactatatccaccgcattggcagaactgcccggagccaaaagactggc
acagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgctgtg
ctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagaggaggt
cattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtactcc
tccgggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggttttgac
agtggaccaaagaaagtctttggcacaaattcacagagtggaggttatggggcaagtggc
tttgacaaaagcggcaatggttttggcggcggctacggcaccaacggccagtcaaactat
ggtgccagccaggccggggtgttcccaacgcagaacttccaggccccacagtttagtgcc
aaccaaggcggtgcacagagtggcatgagccatcaacagttccccttcacacagcaacaa
gcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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