Oncorhynchus nerka (sockeye salmon): 115111239
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Entry
115111239 CDS
T07952
Name
(RefSeq) nipped-B-like protein A isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
115111239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115111239
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
115111239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT
HEAT_EZ
Cnd1
Cnd3
Bacillus_HBL
Motif
Other DBs
NCBI-GeneID:
115111239
NCBI-ProteinID:
XP_029492961
LinkDB
All DBs
Position
LG27:complement(1079173..1121226)
Genome browser
AA seq
2536 aa
AA seq
DB search
MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTTKSLLYNGRIAEEVNCLLACRDEN
LVSQLAHGLNQVSTEHIELKDNLGSDEPEGDVPALLQTVLSRNPGIFREKNVMQQPMVQQ
YKPIQNSMHGSPAQSANFQQASMSPNPSSRGFVSPQSSSGSRFIPQQNSPVPSPYTPQSP
AGFMQYPHPPSYNQHQQIQQASPMVPGGMRNIHESKGPMTNAAHHHPDRQEDYMSIVHRL
GNEESDPSMRNASFPLRSPQPGCSPVGNEGTPKAGSRPPLILQSPPYMSPREGPPDLLLE
SPDQRKKQQKKKLVGKEDKDAYDIVTSPSKDTTKLTLSLSRVKSEEVEDPSGELLPVMMD
QNSDLEGELGCQQVPVLQNVGVIKGQEGPLSSPFDEAELDALAEIERIERESASERERCS
KEVQDKDKPLKKRKQDSFPLEPGAGGTAGTTGAPGSGGGGNAGKLIPQEATAAGNGASRP
ALMVSIDLQQAGRADGQLDPCMAAPIPALEAQRWPEEPAEGPAAEGSDTAGVLRLKADNR
PEVIKNSMDKHDNHREPSRHRHDGKQDRRPDTPKSSSREHGRDRERRHRNEDRRSPEERY
RPDSPRVKQEGRGGGFDPSGRPRSDRPGFRSPSGGEAARNRPDGLKQLQPERKSGEFPAY
LLGGQGSGGLKNFVIPKMKRDGGAVDVAEGWGQPRVKLERLGVRGLVDHISKRPKPVVVL
QKLSFDEVQRIIRVKDRHGSKSGKNRFLSGKSGRGGLDQSVLEELPPELLAEMESTMPLC
ERVKMNKRKRSTVKEKPKYTEVDSDDDSNGESARKRQRKNRGDKAWEYEPERERRGSGDH
RRSKGFQEGCRGSNSCYRDSSDEESPPPSMSDIARQMKKKENQKKRKAYEPKLTHQELMD
SSTFKRFSSSVDNILENLEDVDFTQMDDDEIPQELLLGKQQLNELGSESAKIKAMGITCR
IPSDKLVKVLNILEKNIQDGARLSTLMSHDNDEDEEKLWRDLIMERVTKSADACLTALNI
MTSAHMPKAVYMEDVIERVLQYTKFHLQNTLYPQYDPVYRVDPHGGGLLSSKAKRAKCST
HKQRVIVMLYNKVCDMVSNISELLEIQLLTDTTILQISSMGITPFFVESVSELQLCAIKL
VTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDRDGEPMYIQMVTALVLQL
IQCVVHLPNDRDGMEDEYDSKVDQDLLITNNYETAMRTAQNFLSVFLKKCGSKQGSEEDY
RPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKQTEMTLRVASLDYLGTVAA
RLRKDAVTSKMDQRSIDRILKETQGDDETQQLQKALLDYMEENTETDPSLLFARKFYIAQ
WFRDTTIETEKTMKSQKRDREEDSSDGPGHHAKDIETIGEVMQRAEARKKFLRKIIKTVP
SHFTTLRMNSDTVDYDDSCLIVRYLASMRPFAQSFDIYLTQILRVLGESAIAVRTKAMKC
LSEVVSVDPSILSRLDMQRGVHGRLMDNSTSVREAAVELLGRFVLSRPQLTEQYYDMLIE
RILDTGISVRKRVIKILRDICLEQPTFNKITEMCVRMIRRVNDEEGIKKLVNETFQKLWF
TPTPAHDKDTMTRKILNITDVVTACKDTGYDWFEQLLQNLLKVEEDAAYKPAQKACVQLV
DNLVEHILKYEESLTESKGVNSTRLVSCITTLFLFSKIRAQLIVKHAMTMQPYLTTKCNN
ASDFMVICNVAKILELVIPLLEHPSETFLTTIEEDLMKLIIKYGMTVVQHCVSCLGAVVN
KVTHNYKFVWSCFNRYYGALTKLKTQHQEDPNSTALAANKPALLRSLFTVGALCRHFEFD
MEEFKGITKVVIKEKVLELLLYFTKHEDEEVKTKAIIGLGFLVIMHPSQMFSPEVKTLYN
GILADRSTSVNLKIQVLKNLQTYLQEEDSRMQEADQQWKKLSKQEDLKEMGDISSGMSSS
IMQLYLKQVLEAFFHTQSSVRHFALNVIALTLNQGLIHPVQCVPYLIAMGTDPEPSMRNK
ADQQLVEIDKKYTGFIHMKAVAGMKMSYQVQQAIMASRKSIIRGFRHDETTSALCAHLFS
MVRGNRQHRRAFLISLLNLFDDSSKTEVNMLLFIADNLACFPYQSQEEPLFIMHHIDITL
SVSGSNLLQTFKESLLKEPRRREPKVRKERQSKNGSGGEEDEDKEICDSPRSDENSNPDD
DDDVVRRPKKSKRPVVVEEPSSESDLDLEDLDVEDVDRVMRRLPENATSLLDFANASQGI
LLLLVLKQHLKNLYSFSDSKIQKYSPTESAKVYDKAVNRKTNIHFKPRQTIDFLSNNWAN
VVFTHDIKTRIVKQYLDFKTLMEHLDPDEEDEEGEAAQASANIRNKAINALLGGAGHGHL
APVEYDEDDESEEDERNPGSSRRARRSGDPGNLNESLDSMDVIAIHCPKHKDRPQLARVI
QKIGTGYSVHWMSGSYSGPWADAKKRDGRKTVPWVDTIKESDIIYKKIALTSNHKLSNKM
AQTLRSLYAAKEGTSS
NT seq
7611 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggatatgcctcatgttcccatcaccactcttgctgggattgctagccttaca
gacttgttgaatcagctacccctgccctctcctctcccagccaccaccaccaaaagcctg
ctctacaatgggaggatcgcagaggaggtcaactgcctgctggcctgccgtgacgagaac
ctggtctcccagctggcccacggtcttaaccaggtttccacagagcacatagagctgaag
gacaacctgggcagtgatgagccagagggcgacgtgccggcgctgctccagacggtgctg
tccaggaatcccggcatcttcagggagaaaaatgtcatgcagcagccgatggtgcaacag
tacaaaccaatacagaattccatgcatggcagcccagcccagtcagcaaactttcagcag
gcttcaatgtctcctaatccatccagccggggatttgtctccccacagtcgagctcaggg
agtcggttcatcccccagcagaacagccctgtgcccagcccatacactccccagagccca
gctgggttcatgcagtaccctcacccccccagctacaatcagcaccaacagatacagcaa
gccagccccatggtccctggaggcatgaggaacatccatgagagcaagggaccgatgacc
aacgctgcccaccatcacccagacagacaggaggactacatgagtatagttcacagactg
gggaatgaggagagtgacccctccatgagaaacgcctcgttccctctgaggtcgcctcag
cctgggtgctcacccgtgggaaacgaaggaacacccaaagctggttcaaggccgccactt
atccttcagtctcctccgtatatgtctccccgggaaggccccccggacctgctactggag
tctcccgaccagaggaagaaacagcagaagaagaagctggtgggcaaagaggacaaggat
gcgtacgacatcgtcacctcgccctccaaggacaccaccaagctgacgctgtcgctgtca
cgggtgaagtcggaggaggtggaggacccctctggtgagctgctgccagtcatgatggat
cagaactctgacctagagggcgagcttgggtgccagcaggtccctgtgctgcagaacgtg
ggggttattaaagggcaggagggccctctctcgtcgccttttgatgaggcggagctggac
gccctggcggagattgagaggatagagcgtgagtcggccagtgagagggagcgctgctcc
aaagaggtgcaggataaagacaagcccctgaagaagcgaaagcaagactcgtttccactg
gagcctggagcagggggcacagcaggcaccaccggtgcgccaggcagcggaggagggggc
aatgcaggcaaactgatcccccaggaggctacagcggcaggaaacggagctagcagacca
gccctcatggtcagcatcgacctgcaacaggcgggccgggccgacggccagcttgaccct
tgcatggctgcgcccatcccggccctggaggcacaacgttggcccgaggagcctgcggag
ggccctgcagccgaaggatccgacacggccggggtgctccggctcaaagccgacaatcga
cccgaggtcatcaagaacagcatggacaaacacgacaaccaccgtgagccatccaggcac
cggcatgacggaaagcaagaccggcgccctgacacacctaagtcatcgagcagagagcac
gggcgggaccgggagaggcggcacaggaatgaagacaggcgctcgccagaggagcgctac
cggccggacagccccagggtcaaacaggagggccgtggaggtggctttgaccccagtggg
cggcctcggagcgacagacccggcttcaggtcccccagcggaggagaggcggccagaaac
cgcccagatggactcaaacaactacagcctgagagaaagtcaggagagttccctgcttac
ctgctgggggggcaagggtctgggggtctgaagaactttgtgatccccaagatgaagcgg
gatggcggagctgtggacgtggcagaaggctggggtcagccccgggtcaagctggagcgg
ctgggggttcgggggctagtggaccacataagtaagagacccaagcctgtcgtggtgctg
cagaagctctcttttgatgaggtgcagaggatcatcagggttaaggaccgtcacggctcc
aagtctggcaagaacaggttcctctcaggaaagtcaggcagaggtggactagaccagtct
gtgctggaagagcttcctcctgaactgttggcggagatggagtccaccatgccactgtgc
gagagggtgaagatgaacaagcggaagcggagtacggtcaaagagaagcccaagtacacc
gaggtcgactcagacgacgattccaacggggaatctgccaggaagcgccagaggaagaac
cggggtgacaaggcctgggagtatgagccggagcgggagaggaggggctctggagaccat
aggcggagtaagggcttccaagagggatgcagaggctcaaacagctgctaccgggactct
tctgatgaggagtcgcccccacccagcatgagtgacattgccaggcagatgaagaaaaaa
gagaaccagaaaaagaggaaagcctatgagcccaagctcacacaccaggaactgatggac
tcgtccacattcaaaagattctcctccagtgttgacaacatcctagagaatctggaggat
gtggactttactcagatggacgacgatgagatcccacaggagctgctgctgggtaaacag
cagttgaacgagctgggcagcgagtcggccaagatcaaggccatgggcatcacctgcagg
ataccgtcggataagctggtgaaggtactgaacatcctggagaaaaacatccaggacggg
gccaggctctcgacactcatgagccacgacaacgacgaagatgaggagaagctgtggcga
gacctcattatggagcgcgtgaccaagtcggccgacgcctgtctgacggccctcaacatc
atgacgtccgcccacatgcccaaggcggtatacatggaggacgtgatcgagagggttctc
cagtacaccaagttccacctgcagaacaccctctacccccagtacgaccctgtctatagg
gtggaccctcacggaggtggcctgctgagctccaaggccaagcgggccaagtgctccacc
cacaagcagcgggtcattgtcatgctgtacaacaaggtgtgtgacatggtcagcaacatc
tctgagctgctggagattcagctgctcaccgacaccaccatcctccagatctcctcaatg
ggcatcacccctttctttgtggagagtgtcagtgagctgcagctgtgtgccatcaagctg
gtgacggcggtgttctcccgctatgagaagcacaggcagctgattctggaagagatcttc
acatctctggccagactgcccaccagcaaacgcagtctccgcaacttcaggctgaacagc
agcgacagggacggcgagcccatgtacatccaaatggttacagccctggtgctacagctc
attcagtgcgtggtacacctcccaaacgaccgcgacggcatggaggacgagtacgacagc
aaggtagatcaggacttgctgatcaccaacaactacgagacggccatgaggacagcccag
aacttcctctcggtgttcctcaaaaagtgtggcagtaagcaggggagcgaggaggactac
aggcctctgtttgagaactttgtccaggacctgctctccacggtcaacaagccagagtgg
cccgctgccgagctactgttgagcctgttaggcagactgctggtgcaccagttcagtaac
aagcagacggagatgaccctgagggttgcctccctggactatctaggcacggtggccgct
cgcctgcgcaaagatgccgtcaccagcaagatggaccagcgatccattgaccgcatcctg
aaagagacccaaggtgacgacgagacccagcagctgcagaaagcccttctggactacatg
gaggagaacacagagaccgacccttcactattgtttgccaggaagttctacatagcgcag
tggttccgcgacaccaccatagagaccgagaagaccatgaagagccagaaacgggaccgg
gaagaggactcgtcggacggccctggccaccacgccaaggacatcgagaccattggggag
gtcatgcagcgggccgaggcacgcaagaagttcctccgcaagatcataaagacggtcccc
tcccatttcaccaccctgagaatgaactctgacacggtggactacgacgactcctgtctc
atcgtccgctacttagcctccatgaggccgttcgcccagagctttgatatttacttaacc
cagatcttgcgagtcctgggggagagtgcaatcgctgtccggacaaaagccatgaaatgt
ctgtctgaggtggtttctgtggatcctagcattctttccaggttggacatgcagcgcgga
gtgcatggccgtctgatggacaactccaccagcgtgcgcgaggcggccgtggagcttctg
ggccgcttcgtgctgagccgaccccagctcactgagcagtactacgacatgcttatcgag
aggattctggacacgggtatcagcgtgaggaagagggtgattaagatcctgagagacatc
tgtctggagcagcccaccttcaacaagattacagagatgtgtgtgaggatgatccgtcgg
gtcaacgacgaggagggcattaagaaactagtcaacgaaacattccagaagctgtggttc
accccgaccccggcccacgacaaagacactatgaccaggaagatcctcaacataactgac
gtggtcacggcttgcaaagacacgggctacgattggttcgagcaactccttcaaaatctg
ttgaaagtggaggaagacgctgcctacaaaccggcccagaaggcttgtgtgcagcttgtg
gacaatcttgtggagcacatcctcaaatacgaggagtctcttacagaaagtaaaggggtg
aactccacccgcctggtgtcctgcatcaccactctcttcctgttcagcaagatccgggct
cagctcatcgtcaaacacgccatgaccatgcaaccctacctgaccaccaagtgcaataac
gccagcgacttcatggtgatctgtaacgtggccaagatcctggagctggtgatccctctg
ttggagcacccgtccgagaccttcctcaccaccatagaggaagacctcatgaaactcatc
atcaaatacggcatgacggttgtccaacactgtgtcagctgcctcggtgccgtggtcaac
aaggtgacccacaactataagtttgtgtggtcttgctttaacagatactacggtgctctg
accaagctgaagacgcagcaccaggaagatcccaacagtacagctctggctgccaacaag
ccggccctcctgcgctccctcttcaccgtgggagccttgtgtcgacactttgagttcgac
atggaggagttcaagggcatcaccaaggtggtaatcaaagagaaggtgctggagctgctg
ctctactttaccaaacatgaggacgaggaggtgaagaccaaggctatcatcggcttaggc
ttcctggtgatcatgcaccctagccagatgttttccccggaggtgaagaccctgtacaac
ggaatcctggccgacaggagcacctcggtcaacttgaagatccaggtgttgaagaacctg
cagacctatctgcaggaggaggactcgcgcatgcaggaggctgaccagcagtggaagaag
ctgtccaagcaggaggatctgaaggagatgggggatatctcatcgggcatgagcagctcc
atcatgcagctgtacctcaagcaggtgctggaagccttcttccacacccagtccagtgtg
cgccactttgccctcaacgtcatcgcactcaccctcaaccagggcctcatccaccccgtg
cagtgtgtaccatatctcatcgccatgggaacggaccccgagcccagtatgagaaacaaa
gcggaccagcagttggtggagatcgacaagaagtacaccggattcattcacatgaaggca
gtggctgggatgaagatgtcctaccaggtgcagcaggccatcatggcgtcccgcaagagc
atcatccgaggcttccggcatgacgagaccacctcggccctctgcgcccacctcttctcc
atggtccgagggaaccggcagcaccggcgagccttcctcatctccctgctcaacctgttt
gacgacagctccaagactgaagtgaacatgctgctgttcatagccgacaacctggcctgt
tttccctaccagagccaggaggagcccctcttcattatgcaccacatagacatcacactg
tctgtgtccggcagcaacctgctgcagaccttcaaagagtctctgttgaaggagccgcgg
cgccgcgagcccaaagttagaaaggagcgccagtcaaagaacggctctggcggggaggag
gacgaggacaaggagatctgtgactcacccaggagcgatgaaaactcaaaccctgatgat
gacgatgatgtggtgcggcggcctaagaagtccaagaggccggtggttgtggaggaaccc
agctcggagtcggatttagacctggaagacctggatgtggaagatgtggaccgggtgatg
cggcgactgcctgagaacgccacgtcgctcctggactttgccaacgcctcgcagggcatc
ctgctgctcctcgtgctcaaacagcacctcaagaacctttacagcttctcagacagcaaa
atccagaagtactcgccgactgagtcagccaaagtgtacgacaaggcggtgaacagaaag
acaaacatccacttcaagccccgacagaccatcgacttcctgtccaacaactgggccaac
gtggtgttcactcacgatatcaagacgaggatagtcaagcagtacctggatttcaaaacc
ctgatggaacacttggacccagacgaggaggacgaggagggcgaggcggcacaggccagc
gccaacatccggaacaaagccataaacgcactgcttggaggggccggccacgggcatctt
gcaccagtagagtatgatgaggatgacgagagtgaagaagatgagagaaaccctgggtcc
tctcggcgggcgagacgttcgggggaccccgggaacctcaacgagagcttggactctatg
gacgtcatcgccatccattgccccaagcacaaggaccgtccgcagctcgcccgggtcatc
cagaagatcggcacaggctacagcgtgcactggatgtccggctcctactctggcccctgg
gccgacgcaaagaaacgggacggacgcaaaacggtgccttgggtggacactattaaggag
tctgacatcatttacaaaaaaatcgccttgaccagtaaccacaaactgagtaacaaaatg
gcgcagactttacggtcactgtacgctgccaaggaggggacttccagttaa
DBGET
integrated database retrieval system
