Oncorhynchus nerka (sockeye salmon): 115111260
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Entry
115111260 CDS
T07952
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A-like
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115111260
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
115111260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
ERCC3_RAD25_C
DEAD
CUE
DMA
HHH_3
HTH_8
Na_Ca_ex_C
Motif
Other DBs
NCBI-GeneID:
115111260
NCBI-ProteinID:
XP_029492989
LinkDB
All DBs
Position
LG27:complement(2203141..2231597)
Genome browser
AA seq
1002 aa
AA seq
DB search
MSLFNLERFRFDNNKTSNQDKYTGSVSPESEKENKPARVTTPIANLGKPGRGVVFEDVIS
DPDDDLASDSRRDKLTKVVKEPVKLDVREMTEPYDKEDQVDKALEERLYKLQEIFPNRNR
KELLEVIESTSTLDGAVASCLMMFGDKDSTRKRKPDGSSSCRDKDVVQQPSKRRRTSLAE
DSEEEGAEPSWERQETMVRKLQRKFPDQDKEELRAVLQEHKWNVADALEALRMFSDPEEY
TSSPEVKQKEPKAKSDTKPSKSDAKPSRESKNGMEEAKPSKASPLKWMFKKFAPESKPTS
SSNLQSLKMSNGTSMARKEAVERKAHTSDERASSSEGEDEEATSSEFEGEDEELDSGAED
EGTSTLQGQILLFFQEASLDELSLITGCSVKKAKKIVELRPFTFWHKLKEQFHKAKGLSV
ELLLGCRVVLRERAVLRGLMSKCQNISGRMVKGVSQVIDNGMGSMTQPSILNRKLKLKPY
QLIGLKWLLLLHQHKLSGILADEMGLGKTIQAIAFLARLYQDGIKGPHLITVPASTLDNW
VRELKLWCPSLKVLVYYGSVEDRQYLRHDILNNRVDFNVIVSTYNLAIGNDSDRSLFRKL
KLKYAVFDEGHMLKNMKSLRYRHLMAINAEHRLLLTGTPVQNNLLELMSLLNFIMPSMFS
SSTTQIAKMFSMKSHEEQSRFERDRIAQAKLIMKPFILRRVKSEVLKLLPAKEEKLVFCP
MSEKQQKLYQTMVGRFKKSAIGEKRELCNVMMQLRKMANHPLLHRQYYTTERLEAMSSLM
LKEPTHFDADPVLIQEDMAVMSDFELHRLCQQYSSLDKYQLDKDLVLDSGKFHLLQTLLA
TLKTKGDRVVLFSQFTMMLDILEILLKHLGHRYIRLDGSTPIADRIVLIDDYNTDPEIFV
FLLSTRAGGLGINLTSANVVIMHDIDYNPYNDKQAEDRCHRLGQTRTVQVIKLIHKDTIE
GCMLQLGQKKLKLEQDMTAAEEGDEGTIPEDMASLLKASLGL
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgagtttatttaatttggagcggtttcgttttgacaataataaaacgtcaaaccaggac
aaatacaccggttccgtaagtccagagtcagaaaaggagaataaaccagcacgcgtaaca
acacctatagccaaccttggaaaacctgggcgaggagtagtgtttgaagatgtcatcagt
gaccctgatgacgatttggcaagtgattcgaggagggataaattaacgaaagtggtgaag
gaaccagtgaagctagatgtaagagagatgactgagccatatgataaggaagaccaagtt
gataaggcgctggaagagagactgtacaaactgcaggaaatcttccctaacagaaacagg
aaggagttgttggaggtgattgaaagcacaagcactttagatggtgccgtagcctcatgc
ctgatgatgtttggtgacaaagactcaacgaggaagaggaaaccggacggatccagcagt
tgtcgagacaaagatgtggtccagcagcccagcaagaggaggagaacgtctctggctgaa
gactctgaagaggagggcgcagagcccagctgggaaagacaggagaccatggttaggaaa
ctgcagaggaaattccctgaccaggataaggaagaactcagggctgtgctccaggaacat
aagtggaacgtagccgacgccttggaggcgcttcgcatgttctctgacccagaggaatac
accagctctcctgaagtcaagcaaaaggaacccaaagccaagagcgacaccaaaccaagc
aagagtgacgccaagccaagcagagagtccaagaacggcatggaggaagccaagccaagc
aaagcttcccctctgaaatggatgttcaagaaatttgcccctgaatccaaacctacctcc
tcttcaaatttgcagagcctgaagatgtccaacgggaccagcatggctagaaaggaggca
gtggagaggaaggctcacacctctgacgagagggccagcagctcggagggcgaggacgag
gaggcgaccagcagcgagtttgagggcgaggacgaggagctggactctggggcggaagac
gagggcacatccacgctacaaggccagattctgctcttcttccaggaggcctcgctggac
gagctgtccctcatcaccggctgttcggtgaagaaggccaagaagatcgtggagctgcgg
ccttttactttttggcacaagctgaaggagcagttccacaaggcgaaaggcctgtctgtg
gagctgctgctgggctgcagggtggtgctgagggagagagccgtgctccggggtctcatg
tccaagtgccagaacatctcgggcaggatggtgaagggagtcagccaggtcatcgacaac
ggcatgggctccatgacccagccctccatcctcaacagaaagttaaaattgaaaccctac
cagttgattgggctgaaatggcttctcctgctgcaccaacacaagctgagtggaatcctg
gctgatgagatgggtttgggaaagaccatccaggccatagccttcctggccaggctgtac
caggatggcatcaaaggcccccacctcatcactgtgcccgcctccaccctggataactgg
gttcgggagctaaagctgtggtgccccagtctcaaggtgctagtctattacggctctgtg
gaggaccgtcagtatctgcgacatgacattctgaataatcgggtggacttcaacgtcatc
gtgtccacatacaacctggccatcggcaacgacagcgaccgcagtctcttccgcaagctc
aaactgaagtacgccgtgtttgacgagggccacatgctgaagaacatgaagtccctccgt
taccgccacctcatggccatcaatgctgagcaccggttgctcctgaccggcacccctgtg
cagaacaacctgctggagctgatgtcgctgctcaacttcatcatgccctccatgttctcc
agcagcaccacgcagatagccaagatgttctccatgaaatcccatgaggagcagagtcgt
ttcgagagggaccgcatcgcccaggctaaactcatcatgaaacctttcatcctcagacga
gtcaagagtgaggttcttaagctgctgccagcgaaggaggagaagttggtattctgccca
atgagtgagaagcagcaaaagctttaccagaccatggtgggcaggttcaagaagtctgcc
atcggagagaagcgagagctgtgcaacgtgatgatgcagctgaggaagatggccaaccac
cctctgctccaccggcagtactacaccacagaaagactggaggccatgagtagcctcatg
ctcaaggagccgacccattttgatgcagacccagtgctgatccaagaggacatggctgtg
atgtctgactttgagctccacaggctgtgccagcagtactcgtccttggacaaataccag
ctggacaaagaccttgtactggactctgggaagtttcacctgctccagacactacttgcc
acgctcaagaccaagggagaccgagtagtgctcttcagtcagttcaccatgatgctggac
atcctagagattctgctcaaacacctgggccaccgctacatcagactggacggctccacg
cccatagcagacaggatcgtgctgattgatgactacaacacggacccggaaatctttgtg
ttcctgctgtcgacgcgggccggaggcctgggtatcaacctgacctcagccaacgtggtc
attatgcatgacatcgactacaacccttacaatgacaaacaggctgaggaccgttgccac
agactagggcagaccaggacagtccaggtgatcaagctgatccacaaggacaccatagag
ggctgcatgctgcagctgggtcagaagaaactcaaactggagcaggacatgactgctgcc
gaggagggtgacgagggcaccatacccgaggacatggcctctctgctcaaagcatcactg
ggcctgtga
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