Oncorhynchus nerka (sockeye salmon): 115111355
Help
Entry
115111355 CDS
T07952
Name
(RefSeq) vacuolar protein sorting-associated protein 13A-like isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115111355
Membrane trafficking [BR:
one04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
115111355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
DUF5764
DUF7006
Motif
Other DBs
NCBI-GeneID:
115111355
NCBI-ProteinID:
XP_029493176
LinkDB
All DBs
Position
LG27:complement(8425046..8495545)
Genome browser
AA seq
3238 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPALEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDVTNPKCPLSFGMSLQ
NLSLQTADENWKPCLLNEKAKLFFKLVQLDNLFGYWNVNSILYSNHMPDEALRCLQNSMD
IYSSTPMKHDFIFRPITANAKLSMNPRSDVNFSSPKVDLVVNLREVAVELNRPQYISILE
LLGSVDMMSRNLPYRKYRPQFHVHTNAYIWWQYVIMGIMEVDVKPRLHMWSWQRIHRHRQ
TVKCYRALYKSKITNKKPTEKLLREVEETERTLDIFNITLARQQAEMEASKAGLRIFRPG
VKVEEESQGWVGWMWSGWSGDDGAKSKEVKTGAFGELMTPAEKAKLYTAIGYSEVAVNHN
LPKNFEDIKIYFHMKKMSFSMKDNKDQNEILKVTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVKGLANNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLHVESQPLEIIYDAV
TVNSMSAFFLLPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSRKGLPQLSVGRRTIQDIMSQAYDSFNIKLSSL
QFLYSKPDGDWRKARKLKQSALHILEPVDVKVVFSRAMVVTDSRMPKFKIFGEMPLLSLR
ISDDKVRAVLELINSIPLPESRPAPRSTNTHSTPKAPKQSYTPQLTPRQPTMAELRNSLI
WESGSEEDLFYDAPSSPIGDSPFFPDNMPSPLQRSDSVKRRGLVKKDPKKNMTEFLMTFE
INKLSVQLCRLSRDQEVTVLHLDVERLGTELKIRTFDMTSNTFLREICLECSEYMDSEEK
KVHLITTLDNTEEDLLTLEYTKADKNGPEFKSQYKNTEQSVKVNFSSLDVHLHTEALLNA
MNFLNSLLPPTKEAVPSKEELPTIAEEDEGEGEEGEKEESAVAKRTSSKKSRFEDVVNLH
IRADLNCLKVFIRGHSHMIAEICIEGLVSEVLMRRKAVEVLANLKNIVILDCDKEALYKQ
CVSIADKEVFAFRMVNHTDATEGDAYLDMGKVDTSITLTVGCIQVIFLNKFISSILAFIN
NFQAAKKALAEVTVQAAEKAATGVMELAERSVRISLDVDFKAPLVFLPQSSSSTNVTVAD
LGMVTVKNCFALVDSQTHVKIPPIIDTMTVVLSDLKMYRTTFEKGRFQGEIQVLKPVNLD
LSIQRNLSASWYHSIPDIKITAHLKPMNLILSQDDMTVVLRTLGENMSETSDAASPRPPP
STVDHSDPDTTKGSQGTGGTGTISTSGNIVVTAAVVETQKSTKLKNILKVDFKFDSMTLV
LYSPNGTEVQVLNSRDDQLMLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRRRVK
NITARMMAIRRSAERNVMVEVNYNQGREGTSLETVVQDVYLCASMEFLLTVADIFLKASQ
QGFSSAAPKNSNTKPTVTATAASKEPAPVAVKSEMNVLVKNPEIVFVADLTRADAPALVM
TMECELVMKSNPDGQLMTAVVKDLKVVACPFLREKRRNKETTVLQPCQVFFKSAQSSTSP
QAMEVSIKALTLKVSPIIINTVITIQSVLSPAGADMPQSELESPVPPDLWERRSWRDLKL
WFLEEEGKDEDAQSLVRLIPQGESLQVAISSICLTLEAGVGHRTVPMLLAKSSFHGDVKN
WSTLINLHSQLNLEVHYFNEVMGVWEPLLEPLEDDIRDGFRSWTLGLKMKKKPVKYSGIS
DEVDYSIPDYKTIISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQTSESFQEDEAPFV
VKNRLGLTVSVVYSEMFCPLGCEATENRVELQNGESVNMDYRRTTTHSDQFSAMTSLVAK
DYYIQPTPAGHTSASMIPLIKMGRGMYSVMHKVSGVTRFLVCQIYSVQGSKHIKIRSPFQ
IINHFSIPFRVMEGSMCLGMSLPTEEFCVPLDSYRSKLSLQPVTEGDNQYDSSEGFSYES
VSQQPGARVQQTCHRHGNSASVLMVNIVPLKDTVTSQHTGVAGEHFDEPYILHLWPSVLL
RNLLPYPITYRLQDSEEPAPITLMDGHSAELHTAVMDLSSLELRLLNYLGQDWKAHYGLR
GDQDEITFIVFHSLRDEDEEVRLGEGGERKRAELDIAVHVKYDAGLTEVAIHSPYWMVNK
TGRLLQYKADDIHRKHAMDYDMPLLFSFKPRNFLHNNKVRLMISDSELSDDFSLDTVGSY
GEVKCKGRLKDYLIGVKIDPSSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQEHWTKAKP
HQAAIPFWPEKDSKKLKIKVEGCQSTPQTMDFTKPENCLLLHLDNTLGGVIVDVNLSDHS
IIIRFSDYHDGAAPFLIINHTLEQTLEFYQSSSQKEKDKLSPGKAVYYTWAEPTGSRSLA
WQCGSYSGELKSEEDLRLDVNEEGKLYLISFYEGLQRVALFTEDRRIYKLLCESEKAELA
EQEIILSLQDVGVSLVNNSNHQEVSFIGITSSDVVWEFKPKKKSRWKPLSFKYTALLETH
FREYTESGSVDNAILDLESNFQVSLTPNRQDMRMMKPCDAPIRRNFLPGVKVEYSVSARQ
SAYRVQINRIQIQNQLPGAIFPYVFYPIKLPKSVTMDSEPKPLTDISIVTRAAGHSDISR
IKYFMVLIQEMDLKLDLGFLYAILDLFTPENASVMTSEQMVELFEKDIKYLKTELNNISA
ADTSPISLYEYFHISPIKLHLSLSLSSGGEDGNKEKRETEVIPVQSLNLLLKSIGATLTD
VQDVVFKLAYFELTFQFRTRQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLS
EGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAMTM
DEEYQQKRREAMNKQPSGLREGLTRGGKGLVSGFVSGITGIVTMPIRGAQKEGAAGFFKG
VGKGLVGAVARPTGGIIDMASSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREG
VGSQMLQKIENGQFAKYRYFAHAKVNESDFLMITKSGIFFVTKGTFGQLTCEWQYLFDEF
TKKPMIVEGRRLRIEAKERVKSVFHAKEFGKIINFKSPEIAEWVLTKLEDARESLHKY
NT seq
9717 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttctgggggactacgttgtg
aaccttgacacctcacaactcaagctagggatttggggaggtgatgctgtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagccgga
catataggacgtttggagctgaagattccatggaagaatctgtacacccagtcagtggaa
gctacactggatggagtttacctgctcatcgtgcccacagccagtataaagtatgatgca
gagaaggaggagaaacagcttcaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcggaacaagaaaaccccgcacttgagaaacaagacacctttgtg
gagaaactggtgacacaggtgatcaagaaccttcaggtgaagatctccaacatccacatc
cgctatgaggatgacgtcaccaatcccaaatgcccattatcatttggaatgtctctacag
aacctcagccttcagaccgcagatgagaactggaaaccttgtcttctgaatgagaaagcc
aagttgtttttcaagcttgtccagttggacaatctctttggctactggaacgtgaactca
atactgtactccaatcacatgccagacgaggccctgcgatgcctccagaacagcatggat
atctacagttccacccccatgaaacacgatttcatttttcgtccgataacggccaatgcg
aagctgagcatgaacccccggtcagacgtaaacttctcttcacccaaggtagacttggta
gtcaacctgagagaggtggccgtggagctgaacaggccacagtatatcagcattctggag
ctcctgggctcggtggatatgatgtcacgcaacctgccgtacaggaaataccggccgcaa
ttccacgtgcacaccaacgcctacatatggtggcagtatgtgattatgggcatcatggag
gtggacgtgaagccacggttgcacatgtggtcgtggcagcgcatccaccgccaccggcag
acagtcaagtgttacagagcgctctacaagtccaagatcaccaacaagaagcccactgag
aagctgctcagggaagtggaggagactgagcggactctggatatttttaacatcacgctg
gccaggcagcaagctgagatggaggcgagcaaggcgggtctgcgtatctttcgtccgggg
gtgaaggtggaggaggaatctcagggctgggtgggctggatgtggtccggctggtcagga
gatgacggcgccaagtccaaggaggtcaagaccggagcttttggtgagcttatgactcct
gccgagaaggccaaactctacactgccattggctacagtgaggtagctgtcaatcacaac
ctgccaaagaactttgaggacattaagatatattttcacatgaagaagatgtctttctca
atgaaagacaacaaggatcagaatgaaatcctcaaggtcacagttgaagacctgaaatcc
atgctgacccagaggcccggagcacaagccattaagctgtcagcccagcttagtctgttt
gaggtgaaaggactggcaaataatcggccggcgcccaccctgctgtcgtcgaggaaggct
gccacggtaacagggacccccctgcttgacatcctgtttgagaccaaccctctggatgag
agtgctgaccagcggctccacgtcgagtcccagcctctggagatcatctatgacgctgtg
acggtgaacagcatgtctgcgttcttcttgctgcctgatgacctccagctagacgagctg
accaacgccactctcatgaagctggaacaattccgagaccgcacctccacagggctgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgtg
atcgtgccccaaaccggcttctacgactccactcagaacctcatgctattggacctgggt
cacttcaaggtgtctagtctgagcagaaaggggctaccccagctctctgtagggagaagg
actatacaggacatcatgtcccaagcctacgacagcttcaacatcaagctcagcagccta
cagtttctctacagcaaaccagacggggactggaggaaagcccgtaagctgaagcaatcg
gccctccacatcctggagcctgttgatgtcaaggtggtgttcagcagagccatggtggtc
acagactcacgcatgcccaagtttaagatcttcggggagatgcctctcttgtctctgagg
atctctgatgataaggtgcgggccgtgctggagctgattaacagcatcccgctgccggag
agcaggccggccccgcgcagcaccaacacacactctacacctaaggctccaaagcagtcg
tacacccctcagctaacccccaggcaaccaaccatggctgaactgcgcaactccctcata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggcgac
agtccgttcttccccgacaacatgcccagccccctgcaacgctccgactcggtcaagagg
agaggtctggtcaagaaagaccccaagaagaacatgacagagttcctcatgacgtttgag
atcaacaagctgtctgttcagctgtgtcgtctgtctagagaccaggaggtcacagtgtta
cacctggacgtcgagcgtctcggcaccgagctaaagattcgcaccttcgacatgacatct
aacacctttctacgcgagatctgcctagagtgctcagagtatatggattcagaggagaag
aaagtgcacctgatcaccactctagacaacacagaggaggacctcctcacattggagtac
actaaggctgataagaacgggccagaattcaagtctcagtacaagaacactgaacaatca
gtaaaggtgaacttctcatctctggatgtacacctgcacacggaggctttgctcaatgcc
atgaacttcctgaacagcctcctccccccgaccaaggaggcggtgcctagcaaggaggag
cttcccacaatcgcagaggaggacgagggagagggggaggagggagagaaggaggaatcg
gccgtggcaaaaagaacatcttctaagaagtcaaggtttgaggacgtggtgaatttgcac
atcagagctgatctcaactgtctgaaggttttcatccgaggccatagccacatgatagca
gagatctgcattgagggcctggtgtcggaggtgctgatgaggagaaaggcggtggaggtt
ctggccaacctgaagaacatagtcatcctggactgtgataaggaggcactgtacaagcag
tgtgtgtccatagctgataaggaggtgtttgctttccgcatggtgaaccacacggacgcc
actgagggcgatgcctatctagacatgggtaaagtggacaccagcatcaccctgacggtg
ggctgcatccaggtcatcttcctcaacaagtttatctcctccatcctggctttcatcaac
aatttccaggcggccaagaaggccctggctgaggtgacggtgcaggcagcggagaaggca
gccacaggggtgatggagctggctgagcgcagcgtgcgcatctctctggatgtagacttc
aaagctcctcttgtcttcctgccgcagtcgtcctcctccaccaacgtcactgtggctgac
ctcggtatggtcacggtcaagaactgcttcgccttggtcgactcccagacgcatgtcaag
atccctcccatcatcgacaccatgaccgtggtccttagtgacctgaagatgtacagaacc
acctttgagaaggggagatttcagggggagatccaggttctgaagccggtcaacctggac
ctgtccatccagaggaacctgtcagcctcctggtaccacagcatccctgacataaagatc
actgcccacctcaaacctatgaatctgatcctgagtcaggatgacatgacggtggtgttg
aggactctgggtgagaacatgtcagagacgtcagacgctgcttcccctcgtcctcctccg
tctacagtggatcactccgaccctgacactaccaaaggctcgcagggcacaggaggtact
ggtactatctccaccagcggcaacatagtggtaactgctgcagtggtcgagacccagaag
agcactaagctgaagaacatactcaaagtagacttcaagtttgactccatgactctggtc
ctgtacagccccaatgggactgaggtgcaggtgttgaactccagggatgatcagctgatg
ctggctgagttcaccttgggaacaatctctacatctgtccacatgttctcagacggatcc
atgaaggcctccgtcaaactcacagactgcctgctagacgacaagagacgcagagtcaag
aatatcactgccaggatgatggcgattcgtcggagcgctgagaggaacgtgatggtggag
gtgaactacaatcaggggcgtgaaggcacctctctggagacggtggtgcaggatgtctac
ctctgtgccagcatggagttcctgctcaccgtggccgacatcttcctcaaggccagccaa
caaggtttctcctcagccgcccccaagaacagcaacactaaacccacagttacagccacc
gcagcttccaaggaacctgctccagtggcagtcaagtcggagatgaatgttctggtgaag
aacccagagattgtctttgtggctgacctgacgcgtgccgacgccccagccctggtcatg
accatggagtgcgagctggtgatgaagagcaacccggatggtcagctgatgacggcagtg
gtcaaggacctgaaggtagtggcctgccccttcctgagggagaagaggaggaacaaggag
accactgtgctgcagccctgccaggtgttcttcaagagcgcacagtcctctacctccccg
caggccatggaggtctccatcaaggcactgacactcaaggtgtcgcccatcatcatcaac
acagtgatcaccatccagtcggtgctgagcccggccggtgcagacatgccccagtcggag
ctggagagccccgtgcccccagacctgtgggagcgccggtcctggcgggatctcaagctg
tggttcctggaggaggagggtaaagacgaggatgcccagtccctggtccggctgattccc
cagggtgagtccctgcaggtggccatttcctccatctgcctgaccctggaggcaggggtg
ggccaccgtaccgtccccatgctgctggccaagtcctccttccacggggacgtcaagaac
tggagcaccctcatcaacctgcacagccagctcaacctggaggttcactacttcaatgag
gtgatgggggtgtgggagcctctgctggagcccctagaggacgatatcagagacggcttc
agatcctggactctgggattaaagatgaagaagaagccagtaaagtactcaggtatatca
gatgaagtagactacagcatcccagactacaagactatcatcagcatcagcagcaaggac
cagctcaacatcaccctctccaagtgtggactgggcatgctcagtaacctgggcacggcc
tttgcggaggcggccaagcagacatcagagagtttccaggaggacgaggcgccgttcgtg
gtgaagaaccgtctgggtctgactgtgtcagtggtatacagtgagatgttctgccccctg
ggctgtgaggccacagagaaccgtgtagagctgcagaacggagagagtgtcaacatggac
taccgtcgcaccaccacccactcagaccagttctctgccatgacctcgctggtggccaag
gactactacatacagcccactccggcaggccacacttcagccagcatgattccgttgatc
aaaatggggcgtggtatgtacagtgtcatgcacaaagtctctggggtcacccgcttcctg
gtctgtcagatctactctgtgcagggaagcaagcacatcaagatccgttctcccttccag
atcataaaccacttttccatcccgttcagagtgatggagggctccatgtgtctggggatg
tcattacctacagaggagttctgcgtgcctctcgactcctacaggtcaaagttgagcctg
cagccggtaaccgaaggagacaatcaatatgattcttccgagggcttcagctacgagtca
gtgagtcagcagcctggcgcacgtgtacagcagacctgtcatcgacatggcaacagcgcc
agcgtgctaatggtcaacatcgtacctctgaaagacacagtgacatcacaacacacggga
gtggccggggagcactttgatgagccctacatcctgcacctgtggccctccgtcctgctc
cggaaccttctaccctaccccatcacctatcgcctacaggatagtgaagagcccgccccc
atcacattgatggacggccactcagcagagcttcacaccgccgtcatggacctgtcaagc
ctggaactccgcctcctcaactacctggggcaggattggaaggcccactatggtctccgt
ggcgaccaggacgagatcaccttcattgtgttccactccctgcgcgatgaagatgaggag
gttaggttaggggagggtggagaaaggaagcgggcagagctggacattgcggtgcatgtg
aagtacgatgcgggcctgactgaggtggccatccattctccctactggatggtgaacaag
acgggtcgcctgctacaatacaaggccgacgacatccaccgcaaacacgccatggactat
gacatgcccctgctcttctccttcaagccacgcaactttctgcacaacaacaaggtgcgg
ctgatgatctcggacagcgagctgtctgatgatttctccctggataccgtgggtagctat
ggtgaagtgaagtgcaaagggaggctcaaagattacctgatcggggtgaagattgacccc
agcagtttcagcctgacccgtatcgtgagctttgtgccatactacctgttggtgaacagg
accaagcatgtgatctgggtgggagaggagggccaggaacactggaccaaggccaaacca
caccaggcagccatcccattctggcccgagaaggactccaagaagctcaaaatcaaggta
gaaggctgtcagtcaacccctcaaaccatggacttcaccaaaccagaaaactgcctgttg
ctgcacctagacaacactctgggcggagtcattgtggacgtgaacctatcagaccactcg
atcattatccgtttttcggactaccacgatggagccgcccccttcctcatcatcaaccac
accctggagcagacgctggagttctaccagagtagcagtcagaaggagaaggacaagctg
agcccggggaaggcggtgtactatacctgggctgagcccaccgggtcacgctccctggcc
tggcagtgtggtagctacagtggcgagctgaagagtgaagaggacctgcggttggacgtg
aatgaggagggtaagctgtacctcatctcattctacgagggcctccagcgggtggcgctg
ttcaccgaggacaggcggatctacaagctgctgtgtgagagtgagaaggccgagctggct
gaacaggagatcatcctctccctgcaagacgtgggtgtctccctggtcaacaacagcaac
caccaggaggtgtccttcattggcattaccagttcagacgtggtgtgggagttcaagcca
aagaagaagtctcgctggaaaccactgagttttaaatatacagcgctgctggagacccac
ttcagagagtacaccgagagtggatcagtggacaatgccatcttagacctggagagcaac
ttccaggtgtctctgacgccaaataggcaagacatgaggatgatgaagccatgtgatgct
ccaatcaggaggaacttccttccgggggtgaaggtggagtacagcgtatcagcccgccag
agtgcctaccgtgtccagatcaaccgcatacagatccagaatcagctgcctggagcaatc
tttccctatgtcttctacccaataaaactaccaaagtctgtcaccatggactcagagccc
aaacctctgaccgacatcagcattgttaccagggcagccggacactcagatatctcccgc
atcaagtatttcatggtgctgatccaggagatggacttgaagttggacctgggtttcctc
tacgccatcttggatctgttcaccccggagaatgccagcgtgatgacatcagagcagatg
gtggagttgtttgagaaggacattaagtatctgaagactgagctgaacaacatctcagcc
gctgacacgtcccctatcagtctctatgagtacttccacatctctcccatcaagttgcac
ctgagtttgtctttgagttctggaggtgaggatggtaataaggagaagagggagactgag
gtcatccctgtccaatccctcaatctgctgctgaagagcatcggagcaaccctcactgac
gtgcaggacgtcgtcttcaaattggcctatttcgagctgacattccagtttcgcactcgc
cagcaactacaatgggaggtcatcagacactactcgaagcaggcgataaagcagatgtat
gtgctggtattgggcttggacgtgctgggaaacccctttggactgatccgaggtctgtct
gagggagtggaggctttcttctatgagccctatcagggagctatccagggaccagaggag
tttgtggagggtatggcactgggggtgaaggcactggttggaggggcagtggggggcatt
gcgggcgctgcctccaggataacaggcgccatggcgaagggtgtggctgccatgacgatg
gatgaggaataccagcagaagagacgagaggctatgaacaagcagcccagcggcctgaga
gagggcctgactcgtggaggcaaaggactggtctctggcttcgtcagtgggatcacaggg
atcgtcaccatgcccattagaggtgctcagaaggagggtgcggcaggcttctttaagggt
gtcgggaaggggctggtgggggctgtggccagacccacaggaggtatcatcgacatggcc
agcagcactttccagggcatcaagagggcggctgagacgtcccaggatgtggagagtctg
cgtccgcctcgcttcattcacgaggacggggtcatccgaccatataaggagagagaaggc
gttggcagccagatgctacagaaaattgagaatggacagttcgccaagtacagatacttt
gctcacgccaaagtaaacgagtcagatttcttgatgatcaccaaaagtggaatctttttc
gtgaccaaaggcacatttgggcagcttacctgtgagtggcagtatctgtttgacgagttc
accaagaagcccatgatcgtggagggcaggaggcttcggatagaggcaaaggagagagta
aagtctgtgtttcatgccaaagagtttgggaagattataaactttaaaagtccagaaata
gccgagtgggttcttaccaagctggaggacgccagggagagtctacacaagtactga
DBGET
integrated database retrieval system
