Oncorhynchus nerka (sockeye salmon): 115111403
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Entry
115111403 CDS
T07952
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog
KO
K13100
pre-mRNA-splicing factor CWC22
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115111403
Spliceosome [BR:
one03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
115111403
Complex C
U4/U6.U5 tri-SnRNP related factors
115111403
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
MA3
MIF4G
DUF7026
Motif
Other DBs
NCBI-GeneID:
115111403
NCBI-ProteinID:
XP_029493281
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All DBs
Position
LG3:complement(47716829..47768302)
Genome browser
AA seq
1057 aa
AA seq
DB search
MATKTNDNDLAVELSSTSKEEHSRSSGMGQPRRSPSEEDEGENDVAQQSSSMEATEGADS
PAASPGPKGPRASSEALIVLGSPGVASPGVASSRATRGSRAPSSASVSQEEDESSGSDDG
SSDEAVGCRMKSSVAQIMRGPDDQSANRGRSPTPDDRDGDPRSSCSRSRSRSQERDRRYG
GGGYGRSREDDRNRDRYYERQSSRDREAEFRRRGRSPSPAKKDPATEEPPVKKKKEELDP
ILTRTGGAYIPPAKLRMMQAQITDKSSLAYQRMSWEALKKSINGLINKVNVSNIAMIIQE
LLQENIVRGRGLLARSTLQAQSASATFTHVYAAVVAIINSKFPQIGELILKRLILNFRKG
YRRNDKAQCLTASKFVAHLVNQNVAHEVLCLEMLTLLLERPTDDSVEVSISFLKECGLKL
TEVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAIRKDGFKDHPIVPEGLDLVEEED
QFTHMLPLEDDYNQEDILNVFKMDTDFLENEEKYKAIKKEILDEGSSDSGEDANGSDDDE
DDDNDGEKEREEGGDEAEKVTIFDQTEVNLVAFRRTIYLAIQSSLDFEECAHKLIKMDFP
DSQTKELCNMILDCCAQQRTYEKFFGLLAGRFCLLKKDYMESFEAIFMEQYETIHRLETN
KLRNVARMFAHLLYTDSVPWSVLECIKVSEDTTTSSSRIFVKILFQELCAYMGLPRLNER
LKDMTLQPFFEGLFPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNAPKIIMTQNQEVE
SSDTDSSSDSSSSDSDSSNSDSSDSSSDSSSSSSSSDSDSRRKKSKGQRKNKKSDKDEKK
DKMTKSKASSKNTSSNQKSPLEERPNKSPRNDNRRRDDSSSDEEEAAKRGGSRPEPEDHH
KFSRHRGREEDAPQPTYERPHRDRGGHQDEEQPRGRPDRGRDYEDSDRHPESRRHNRDDG
GKYDGKRQAPQVDQADHDRVRHHSPEKEKEPARYRNRERSKSREKSSRKEKNMDSSRNGV
EQQAERADKENRHHSDRYREPRRNEERSRDSSPRRQR
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggctacgaagacaaacgacaacgatttagcagtggagttgagctctacttctaaagaa
gagcattccaggtctagtggcatgggtcagccccgcaggagcccgtcagaggaagatgag
ggggaaaacgatgtggcacagcagagcagcagcatggaagctacagagggggcagatagc
cctgcagccagtcctggacccaaaggtcccagagccagctcagaggccctcatagttcta
ggcagtcccggagtggccagtccaggagtagccagctccagagccactaggggtagtagg
gccccatccagtgccagtgtcagccaggaggaagatgagtccagcggctctgatgatggg
agcagtgatgaggcagtaggctgcaggatgaagagcagcgtggcacagatcatgcgtggt
ccagatgaccagagtgcgaacagaggcaggagccccaccccagatgacagggatggtgat
ccccgcagttcctgctctaggtcccgttccagaagtcaggagagggaccggcgctacggt
ggaggaggttatggcaggtcaagggaggatgatcgtaacagggaccgatactacgagcgc
cagtcaagtcgtgacagagaggctgagttcaggaggagaggccggtcgccctccccagcc
aagaaagaccctgctacagaggaaccaccagtgaagaagaagaaggaggaactggaccct
atcctgaccaggactggtggagcttacatccccccagccaaactgcgcatgatgcaggcc
cagatcactgacaagagcagtctggcgtaccagcgtatgagctgggaggctctgaagaag
tccatcaacggtctgatcaacaaggtgaatgtgtccaacatcgccatgatcattcaggag
ctgctgcaggagaacattgttaggggcagaggtctcctggccaggtccaccctgcaggcc
cagagtgcttcggccaccttcacccacgtctatgctgctgtggtagccatcatcaactcc
aagttccctcagataggagagctcatcctcaagagactcatccttaacttccgcaagggc
taccggaggaacgacaaggcacaatgtctcacggcatcaaagtttgttgctcatctcgtc
aatcagaatgtggcccatgaggtcttgtgtctggagatgttgactctgctcctggagaga
cctactgacgacagcgtggaggtgtccatcagcttcctcaaggagtgtggcctcaaactc
acggaggtttcccctaggggcatcaatgccattttcgagcggctgcgcaacatccttcac
gaatcagagattgacaagcgggtgcagtacatgatcgaagtgatgtttgccatcaggaag
gatgggtttaaggaccaccctatcgtcccagaggggcttgacctggtggaggaagaagat
cagttcacacacatgctgcccttagaggacgactacaaccaagaagatatactcaatgtc
tttaagatggatacagacttcttggagaacgaggagaagtacaaagcaattaaaaaggag
atcctggatgagggcagcagcgactctggagaggatgccaatggaagtgatgatgatgaa
gatgatgataatgatggagaaaaggagagggaagagggtggagatgaagcagagaaagtc
accatctttgaccagacggaagtcaacctagtcgcatttcgccgtaccatctatctcgcc
atccagtcaagtttggattttgaggagtgtgcccacaaattgatcaagatggactttcct
gacagccaaacgaaagagctgtgcaacatgattctggactgctgtgcccaacagaggaca
tacgagaagttctttggtcttctagcagggaggttttgtctcctgaagaaggactacatg
gagagttttgaggccatcttcatggagcagtatgaaaccatccatcgcctagagaccaat
aaactgaggaacgttgctagaatgttcgcccatctcttgtacacagactcagtcccgtgg
agtgtgctggaatgtattaaagtcagtgaggacaccaccacctcatccagtcgtatcttc
gtcaagatcttgtttcaggagctctgtgcctatatgggacttcccaggctcaatgaacga
ctcaaggatatgacgctgcagcctttctttgagggtctttttcctcgtgacaaccccagg
aacaccagattcgccattaatttcttcacctctatcggcctgggtggacttacggatgag
ctccgtgagcatctaaagaacgcccccaagattatcatgacccagaaccaggaagtggag
tcgtctgacactgactcgtcctctgactcgtcctcctcagacagtgacagcagcaacagt
gacagctctgactcttccagtgactcctcctcatccagcagcagctcagattctgactcg
aggcgtaagaagagcaagggccagagaaaaaataagaagagtgacaaagacgagaagaaa
gacaagatgaccaagtctaaggcttcttccaaaaatacctcctcaaatcagaagtcacct
ctggaggaacggcccaataagagtccgagaaacgacaaccgtcgccgcgatgacagcagt
agcgatgaggaggaggcggcgaagcgcggtgggagtagaccagagcctgaggaccaccac
aaattctctcgccacaggggtcgagaagaagacgcgccgcaacccacgtatgagagaccc
caccgcgaccgtggggggcaccaagatgaggagcagcctcgtggcaggcctgacagaggc
agagactacgaggacagtgacagacatccagagtcccgcaggcacaacagggacgatggg
gggaaatatgatgggaaacgccaagcaccccaggttgaccaggctgaccatgacagagtc
agacaccacagccctgagaaagagaaggaaccagccaggtacagaaacagagagaggtca
aagtcacgggagaagagcagccgcaaggagaaaaacatggattcttccaggaacggggtg
gagcagcaagcagagcgggcggacaaggagaaccgccatcactctgacagatacagagaa
cccaggagaaatgaggaacggagcagggatagctccccacgtagacagagatag
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