KEGG   Oncorhynchus nerka (sockeye salmon): 115111472
Entry
115111472         CDS       T07952                                 
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03082  ATP-dependent chromatin remodeling
one03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    115111472
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    115111472
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:one01009]
    115111472
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:one03021]
    115111472
   03036 Chromosome and associated proteins [BR:one03036]
    115111472
Protein phosphatases and associated proteins [BR:one01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     115111472
Transcription machinery [BR:one03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     115111472
    SWI/SNF complex
     115111472
Chromosome and associated proteins [BR:one03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    115111472
   PBAF complex
    115111472
   SWI/SNF complex
    115111472
SSDB
Motif
Pfam: SNF5 INI1_DNA-bd DUF1679
Other DBs
NCBI-GeneID: 115111472
NCBI-ProteinID: XP_029493411
LinkDB
Position
LG27:12561231..12566542
AA seq 370 aa
MALSKTFGQKPVKFQLEEDGDYYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTTLATSVTLLKASEVEEIFEGNDEKYKAISISTEPPAYLREQKGKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILDEQTDQRVIVKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGEADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTW
NT seq 1113 nt   +upstreamnt  +downstreamnt
atggcgcttagtaagacatttggacaaaaacctgtcaaatttcagcttgaagaagatggg
gattattatatgattgggtcagaggtaggaaattacctgcgtatgttcagaggttccttg
tataagagatacccatcactatggaggaaactggcatcagtggaggagcggaagaaaata
gtggaatcatcacacgatcatggttacacaaccttagctaccagtgtgacccttctgaag
gcatcagaggtagaggagatcttcgaaggaaacgatgagaagtacaaagctatctccatc
agcacagagccccccgcttacctcagagagcagaagggtaagcggaatagtcagtgggtc
cccacgctacccaacagctctcatcacctggatgctgtcccctgctccaccactatcaac
cgcagccgcttagggcgagacaagaagaggaccttcccgctctgttttgatgaccatgat
cctgcagtgatccatgagaatgccacccagtctgaggttctggttccaatccgactggac
atggagatagaggggcagaagcttagggatgctttcacctggaatatgaacgagaagctc
atgactcctgaaatgtttgcggagatcctgtgtgacgacctggacctgaaccccttggcc
tttgtcccggccatcgcctcagccatccgccagcagatagagtcctatcccacagacagc
atcctggatgaacagactgaccagagggtcatcgtcaagctaaacatccacgttggaaac
atctcgctcgtggaccagtttgagtgggatatgtcagaaagggagaactccccagagaag
tttgccctgaaactgtgctcggagctgggcctagggggagagtttgtcaccaccattgct
tacagcatccgaggacaacttagttggcaccagaggacatacgctttcagtgagaacccg
ctgcccacggtagagatagccatccggaacacaggtgaagctgaccagtggtgcccactg
ctggagacactgacagatgcagagatggagaagaagatcagggaccaggatagaaacact
cggcgcatgagacgactggcaaacacatggtag

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