Oncorhynchus nerka (sockeye salmon): 115111487
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Entry
115111487 CDS
T07952
Name
(RefSeq) homeobox protein cut-like 2 isoform X1
KO
K09313
homeobox protein cut-like
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115111487
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain CUT
115111487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
DUF3095
Motif
Other DBs
NCBI-GeneID:
115111487
NCBI-ProteinID:
XP_029493441
LinkDB
All DBs
Position
LG27:12885448..13010703
Genome browser
AA seq
1554 aa
AA seq
DB search
MAADVGSMFQYWKKFDLRRLQRELNSVASELAGRQEESEHSHKHLVELSREFKRNVSEEV
QEMVAPVLKSFQAQVVALNKRSKEAESAFLGIYKQLIEAPDPAPVLEATHTLEERLQQLQ
SSAPDSEALVREVSRHWRRHLECLNKPDDTEDGPAAASGAVGASSRTACVMTPKSKQAFR
ATCSPQQNHQIQSQTEGKAEDADTTLADRLGEAEERIKVLNSSLSTAQTDLLDLRCKYDQ
EKANKVEEVSVIMMNLEKANQKAEMAQRQVERLKEQLASARSTTPGSYNPPEGTSGERDE
KGGVLSSKLEAKLIAKDCEILRLLENVQRLQFSLQEVQDTSANQIISLEHQLAYKTEAIE
RLETKLQSQMDYEEMKTDLSILKVMKLASANGSSSQESAKAAEALLLDKEAFLPSHKYLM
DKARVLHNNDEDQSEESGREGGRPTGSFFSASQVDVRTLASPGPPTMEVSSSSYDLPRPF
SVSPCSGGRLSVDHVVHKQLLCSPLFKKEAGSPIMAFPTALYAAKAALMSTNQGPAGTGG
IEAGLPSDQSESGSSTAGDDDQLETADIAFQIKEQLLKHNIGQRVFGHYVLGLSQGSVSE
ILARPKPWRKLTVKGKEPFIKMKQFLSDEQNILALRTIQVRQRGSITPRIRTPETGSDDA
IKNILEQAKKEIQSQRGGGSGTGYTSTLYSTVLGDIKSSLGSPSGRSSNGADSSSDDTIK
NILEQARREMQAQQQALMEMDVCGRASATSAGPQVKRLGLPEPSKGLPLPTFIKQEEGGT
VTMCMANAISSPQTPLSVLSPAAFVQNIIRKVKSEIGEAGTYFDQHWSVERGPIGMVGGV
GGGSSQPFTSVSPSLSSSSSSGPSALPRLENGECLPNSEEASAAEEDTGSGMMQSVEVKV
ESDVSMSGESTGRGLAYYPSYIPRTLKPTVPPLTPEQYEMYMYREVDTIELTRQVKEKLA
KNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLLDQLGQGLNQL
PSQSLSQDKSPVTAQSSPSPPPSPEEIHSSPLVEPVSLTLESSKENQQPEGLVNPHPEGG
KSTPSLLSLHQPHTPLGIQELVAMYPELDTYAITKKVKEVLTDNNLGQRLFGESILGLTQ
GSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDPHNVDKLRDMKKMEKKAYLKRRYGLLS
TGSDSDSPSASSECVSPALVSIDLCPYSQVKKPRVVLGAEEKDALRKAYLLEPYPSQHTI
EILASQLNLKTNTVINWFHNYSRSRMRREVLMEGLQDNDTDAEHHSYSPSATQSPTSDGD
ERGLLHPTGRTPHPILSLSANTSLPHVKQEASEGEEEEREGFNGQSNIQCFSMGVQFPQL
KTEHGDLMVVCQEPHLAPHYIQSLRQEEGMSSQAQGLFHGELSLDGPQRASQSRHEGDNS
SKSFVDPVSFKASSEPCRSSLEVSLNSPSAASSPGLMMSVSPVPSSSTPISPSLPNPPTT
STNHSLDPNPLPPIQSPKPNKSVQRRTEKMANLNNIIHRLERAANREETLEWEF
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgatgtgggatcgatgtttcaatattggaagaaatttgatctacggcggctt
cagagggagttaaactcagtagcgtctgagctggcagggcgacaggaagagagcgagcac
tcgcacaagcacctggtggagctgagccgggagttcaagagaaatgtctcagaggaagtg
caggagatggtggctcctgtcctcaagagtttccaagcccaggtggttgctctgaacaag
cgcagtaaggaggcagagtctgcattcctgggaatctacaagcagcttatcgaagcccca
gacccagctcctgtgctggaggccacacacaccctggaggagaggctgcagcagctgcag
agttcggccccagacagtgaggccctggtcagggaggtcagcaggcactggaggagacac
ctggagtgccttaacaagccagacgacacagaggacggcccagcagcagcgtcaggagct
gtgggggcatcgagccggaccgcctgtgtcatgactcccaaaagcaaacaggccttcaga
gccacatgctcacctcagcagaaccaccagatccagagtcagacagaggggaaggccgaa
gacgcagataccactctggccgacagactgggtgaggccgaggagaggatcaaagtgcta
aattcatctctgagcacagcccagacagacctgctggaccttaggtgtaaatacgaccag
gagaaggccaacaaggtagaggaggtcagcgtgatcatgatgaaccttgagaaggcgaac
cagaaagcggagatggcccagaggcaggtggaaaggctaaaggagcagctggccagtgcc
cggagcaccaccccaggcagctataatccaccagagggcactagtggggagagggatgag
aaaggtggcgtgttgtcatccaagttggaggctaagctgattgctaaagactgtgagatc
ctcaggctgttggagaacgtacagagactgcagttctcactacaggaagtccaggacacc
tcagccaatcagatcatatcgctggaacaccagctggcctataaaacagaagctattgag
agattagaaactaaactgcaatcccagatggactatgaggagatgaaaacagatctcagt
atcctgaaggtaatgaagttggcctcagcgaatggtagctcatcccaggaatctgccaag
gctgcagaggctcttttgctggacaaagaggcctttcttccctctcacaaatacctgatg
gataaggccagagtcttacacaacaatgatgaggaccaatcggaggagtcaggcagagag
gggggcaggcccacagggtccttcttctcagcctcccaggtggatgtgcgtaccttggcc
agccctggtcctcccaccatggaagtctcctcctctagctacgacctcccccgccccttt
tctgtgtccccctgctcagggggcaggctgtctgtggaccacgtcgtccacaagcagctc
ctctgctccccacttttcaagaaggaagccggcagccccatcatggccttccccaccgcc
ctgtacgcagccaaagccgccctaatgtcaaccaatcagggacctgcaggaactgggggc
attgaggctggcctgcccagcgaccaatcagagagtgggagctccactgcaggcgatgat
gaccagttggagacagcagatattgccttccagatcaaagagcagctgctgaagcacaac
attggccagcgtgtgtttggtcactacgtgctgggcctatcacagggctcggtcagtgag
atcctggcccggcccaagccctggaggaagctgacagtgaaaggcaaggagcccttcatc
aagatgaaacagttcctgtctgatgagcagaacattctggccctcagaaccatccaggtc
cgacagagagggagcatcactcctcgcatccgaactcctgaaactgggtcagacgacgcc
ataaagaatatcttggagcaggccaagaaggagatccagtcccagagaggaggtgggtct
ggaacaggttatacatctactctttattcaactgtgctaggtgacattaagtcgtccctg
ggcagcccctcgggcaggagcagtaacggggcagacagcagctcagacgacaccatcaag
aacatcctggagcaggccaggagggagatgcaggcgcagcagcaggccctgatggagatg
gatgtctgtggtagggcctctgccaccagcgctgggccccaagtgaagcgcctggggctc
cctgagccctccaagggcctgcccctacccaccttcatcaaacaggaggaggggggcacg
gtgactatgtgcatggccaacgccatcagcagcccccaaaccccccttagtgtcctctcc
cctgccgccttcgttcagaacatcatccgtaaagtcaagtcagagatcggcgaggcaggg
acttacttcgaccagcactggtccgtggagcgggggcccataggcatggtgggcggcgta
gggggcggcagctctcagcccttcacctcagtgtctccctccctgtcctcttcctcgtcc
tcgggcccctcggcccttccccggttggagaacggagagtgtctgcccaacagtgaggag
gcgtctgcggccgaggaggacactggctcggggatgatgcagtctgtggaggtgaaggtg
gagtcagacgtgtcaatgagtggagagtcaactggccgtggcctggcctactacccatca
tatatcccccgcaccctgaagcccaccgtgccgcccctgacaccggagcagtatgagatg
tacatgtatcgcgaggtggacaccatcgaactcacccgacaggtcaaagagaagctggcc
aagaatggcatctgtcagaggatctttggtgaaaaggtgctgggtctgtctcagggcagt
gtgagtgacatgctatctcggcccaaaccctggagcaagctgacccagaaaggcagggaa
ccctttatccgcatgcagctgtggctgctggatcagctgggacaaggactcaaccagctc
cccagccagagcctctctcaagataaaagcccagtgacggcccagtcgtcgccctccccg
ccccccagcccagaggagatccactccagcccgctggtggagcccgtcagcctgaccctg
gagagcagcaaggagaaccagcagcccgagggcctggtgaacccccacccagagggaggg
aagtccacccccagtctgctttcccttcaccagccccacaccccgctgggcatccaggag
ctggtggccatgtacccagagttggacacatacgctatcaccaagaaagtcaaggaggta
ctgacagacaacaacctaggccagcggctgtttggggagagtatactgggcctcacccag
ggctcagtgtcagacctgctctccaggcccaagccctggcataaactcagcctcaaaggc
agggagccttttgtccgcatgcaattgtggctcaacgacccgcacaatgtggacaagctg
agggacatgaagaagatggagaagaaagcctatctgaagcggcggtatggactgctgagt
accggctcagatagtgactctcccagcgccagctctgagtgtgtgagcccggccctggtc
tccatagatctgtgtccctacagccaggtgaagaagcccagggtggtgctgggggctgag
gagaaggatgctctgaggaaggcctatctcctggagccatacccatcccagcacaccatt
gagatactggcctcccagctcaacctcaaaaccaataccgtcatcaactggtttcacaac
tatagcaggtccaggatgcgacgggaggtcctcatggagggtctccaggacaacgacacg
gatgcagaacaccacagctactctccctcggcgacacagagtcccacctcagacggggat
gagagggggctgctgcaccccactggacgcaccccccaccccatcctctccctcagcgcc
aacacatcactgcctcatgtcaaacaggaggccagtgagggagaggaggaggagagggag
ggcttcaacggacagtctaatatccagtgtttctctatgggcgtccagttccctcagttg
aaaacggagcatggggacctgatggtcgtctgccaagagccccacctggctccacactat
attcagagcctgaggcaggaagaagggatgagtagccaggctcaggggctcttccatggg
gagctctccctagatggcccccagagagccagccagtccaggcacgagggtgacaactcc
agcaagtcttttgtagacccagtcagcttcaaggcatcatcggagccctgtcgcagcagc
ctagaggtctccctcaactccccctccgctgcctcctcacccggcctcatgatgtctgtc
tctcctgtcccgtcttcctctacacccatctccccatccctgcccaacccacccaccaca
agcaccaaccacagcctggaccctaaccccctgcctcccatccagagccccaagcccaac
aagagtgttcagagacgcactgagaaaatggccaacctcaacaatatcatccataggctg
gaaagagcagctaaccgggaggagaccctggagtgggagttttag
DBGET
integrated database retrieval system
