Oncorhynchus nerka (sockeye salmon): 115111619
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Entry
115111619 CDS
T07952
Name
(RefSeq) vacuolar protein sorting-associated protein 33A-like
KO
K20182
vacuolar protein sorting-associated protein 33A
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04140
Autophagy - animal
one04148
Efferocytosis
one05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115111619
04148 Efferocytosis
115111619
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
115111619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115111619
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
115111619
Hops complex
115111619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec1
Takusan
HexPS-like
Motif
Other DBs
NCBI-GeneID:
115111619
NCBI-ProteinID:
XP_029493728
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Position
LG27:19164465..19174657
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AA seq
601 aa
AA seq
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MSAHLSYGRVNLNILREAARKELREFLDKCGGSKAIVWDEYLTGPFGLIAQYSLLKEHEV
EKMFTLKGGRLPAADVKNIIFFVRPRLELMDIIAENVISEDKMHSPRDFHILFVPRRSML
CEQRLKEQGVLGSFINIDEYILDLIPYDGDLLSMESEGAFRECYLESDQTSLYHTAKGLM
TLQALYGTIPQIFGKGECARHVANMMLRMKREFAGSQTQILPVFDSLLLLDRNVDLLTPL
ATQLTYEGLIDEVYGITNGYVKLPPEKFSAQKKQGEAGKDLPTEPKKMQLNSAEELYAEI
RDKNFNGVGAALSKKAKIISAAFEERHSAKTVGEIKQFVSQLPHMQAARSSLANHTSIAE
LIKDITTSEAFFDNLTVEQEFMTGVDTDKVNTYIEDCIAQKDPLIKILRLVCMQSVCNNG
LKQKLLDYYKREILQTYGYEHMLTLNNLEKTGLLKPQTSTRNNYPTIRKTLKLWMEDANE
QNPNDISYVYSGYAPLSIRLTQVLARPGWRSIEEVLKMLPGPHFEERQQLPAGLHKKRQQ
GENRTTLVFFLGGVTYAEIAALRFLSQMEDGGTEYIIATTKLINGTSWIKSLMDRPEAQA
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgcacttatcatatggaagagtaaatttaaacattttgagggaagcagcgcgg
aaggagctccgtgagtttttggacaaatgtggaggaagcaaggctattgtgtgggatgaa
tacctgactggaccctttggattgatagcacaatattcattgttgaaggaacatgaggtg
gagaagatgttcaccctcaaaggggggcgtctccctgctgctgacgtgaaaaatatcatc
ttctttgtccgtcccaggcttgagctgatggatattatagctgaaaatgtaatcagtgag
gataagatgcattccccacgtgatttccacattttgtttgtgccacggcggagcatgctc
tgtgagcagcggctgaaagagcagggggtcctgggctcgtttatcaacatagacgagtac
atcctagacctcatcccctatgacggagacctgctctccatggagtccgagggggcattc
agggagtgctatctggaaagtgaccagacaagtctgtaccacactgccaagggccttatg
actctccaggctctgtatgggaccatcccccagatatttgggaaaggggagtgtgcacgg
catgtagctaacatgatgcttaggatgaaaagggagtttgctggcagccagactcagatc
ctacctgtgtttgactcactgctgctgctagaccgcaatgtagacctgctcacccctttg
gccacacagctcacatacgagggcctcattgacgaagtctatggaattaccaacggttat
gtgaagttgcctcctgagaagttttctgcccaaaagaagcagggtgaggcgggtaaagac
ctgcccacggagcccaagaagatgcagctcaactcagcagaggagctgtatgctgagata
cgggacaaaaacttcaatggcgtaggggctgcactgagcaagaaggccaagatcatctcc
gctgcatttgaggaacggcacagtgccaaaacagtgggcgagataaagcagtttgtgtcc
cagctgccccacatgcaggcagcacggagctcgctggccaatcacacctccatagctgag
ctcatcaaggacatcaccacgtctgaggccttctttgataacctgacagtggagcaggag
tttatgactggagtcgatacagacaaggttaacacatacatagaggactgcatcgcccag
aaggatcccctaatcaaaatcctgcggctggtctgtatgcagtcggtctgcaacaatggc
ctcaagcagaagttgttggactactacaagagggagattctgcagacttatggatatgaa
cacatgcttaccctcaacaacctggagaagacgggtcttctgaagccccagacaagcacc
aggaataactaccccaccatcaggaagacactcaaactctggatggaggatgccaatgaa
cagaaccccaacgacatctcctatgtgtacagtggctatgctcctcttagcatccgtctg
acccaggtgttggccaggcccggctggcgcagcatcgaggaggttctgaagatgctccct
ggtccacactttgaggagagacaacagctgcctgctggtctccataagaaacgccagcag
ggggagaacaggaccacactggtgttctttctgggaggggtgacctacgcggaaatcgct
gccctgcgcttcctgtctcagatggaggatggtggcacagaatacatcattgccaccacc
aagctcatcaatggtacgagctggatcaaatccctaatggaccgtcctgaggctcaggcc
tcctga
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