Oncorhynchus nerka (sockeye salmon): 115111666
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Entry
115111666 CDS
T07952
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3-like isoform X1
KO
K22611
spliceosome associated factor 3, U4/U6 recycling protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115111666
03036 Chromosome and associated proteins [BR:
one03036
]
115111666
Spliceosome [BR:
one03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
115111666
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
115111666
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
HAT_PRP39_N
LSM_int_assoc
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
RRM_occluded
HAT_Syf1_M
RRM_11
FAT
Lsm_interact
PRP6_TPR
Motif
Other DBs
NCBI-GeneID:
115111666
NCBI-ProteinID:
XP_029493844
LinkDB
All DBs
Position
LG27:complement(21003946..21017823)
Genome browser
AA seq
952 aa
AA seq
DB search
MAATGDADETQLQDMEEEAVMENEMDSDEEEGLGIENSDDEIDNSSEDEKENEAEIQRLE
EQLSINAFDYNCHVDLIKLLRQEGELPRLRKARQKMSELFPLTEEIWLDWLKDEIHLTEE
EPNREKVYELFEKAMKDYICPEIWLEYAQYSIGGMGLPGGMEKVRSIFERALTAVGLHMT
KGATVWEAYREFENAILATVQPPPGSVPTREQQELLNAQLERIHTLFRRQLSIPLMDMDG
TYAEYEEWSDQGVSDTVSQKYKGALQEMEKSKPYEETLMIAEPPKLAEYQTYIDYEQKEG
DPARIQIIFERALSENCLVPDMWAKYTKYLDRQLKIKDLVLSSHDRAVRNCPWTMGLWKN
YLLALERHGADHHTISDVFERALNAGFIQATDYVNIWEAYLDYLRRRVDFSKGEKSSREL
EELRAAFTRSLDYMKQDVEDRFSESGDPSCTIMQVWAKIEALHCKNMQKARELWDSIMTK
GNAKFANMWLEYYNLERSYGDALHCRKALHRAVQCTSDYPEHVCEVLLTFERVEGSLEDW
DAAVQKTETRLNRVNEQRAKVTDKEAHVARQVEEKTEQRRRAKADKKNQKKGQKGSRPGE
KRKAEDKDYEDEWGEESEQPPKRHRREGDQGFRGGCGAEEFMGTESGLFGRRAPPGRRQE
PPGTKRGQQVAPATVWKTQEDDPELRKDDCSVFISNLAFTMEDPEKRLKKLFEPCGPVQS
VRPVYAAKGFRGYCYVQFEGKASVVEALKMDRQEVEGRPMFVSPCVDKNKNPDFKVFKYN
TNLEKHKIFISGLPFSCTKEQLEELCKVHGTIKDIRLVTNRSGKPKGLAYVEFGDEAQAS
QAVLKLDGTVLQEHTLSVAISNPPRRNTADKPGFSRPMGAMMPRSMVYGSRGKGRTQLSL
LPRSLHRQTGSESKAENGTAPKPTGGASGDAGIEAQAKPLSNSDFAKMLFKK
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaacgggggacgcagatgagactcagttgcaagacatggaggaagaggcagtg
atggaaaatgaaatggattcagatgaagaggagggtttgggaattgaaaattccgacgat
gaaatagacaattcatcagaagacgaaaaagagaatgaagccgaaattcagcgtttggag
gagcagctgtccatcaatgcttttgattacaactgtcatgtggacctcataaaactcctg
aggcaggagggggagctgcctcggctgcgtaaggcaaggcagaagatgagtgagctcttc
ccactcactgaagagatttggctggactggctcaaggatgagatccacctaacagaagag
gagccgaaccgggagaaagtctatgagctctttgagaaggctatgaaagattatatctgc
cctgaaatctggctggaatatgcccaatactctatcgggggcatgggactgcctggtggg
atggagaaggtgaggtccatcttcgagagagccctgacagctgtggggctgcacatgacc
aagggggcgacagtgtgggaggcctacagggagtttgagaacgccatactggcaacagtt
cagccgccccctggcagcgttcccacccgcgagcagcaggagcttctgaacgctcagctc
gagcgcatccacactctgttccgccgccagctgtccatccccttaatggacatggacgga
acatatgcagagtatgaggagtggtctgaccagggggtgtctgatacagtctcccagaag
tacaagggggccctgcaagaaatggagaagagcaagccttatgaggagactctgatgata
gctgagccacccaagctggcagagtatcagacctacattgactatgagcaaaaggagggt
gacccagcacggatccagatcatctttgagcgggcattatcagaaaactgcctggtacca
gacatgtgggcaaagtacaccaaatacctggaccgccaactgaagatcaaagacctggtc
ctgtcctctcacgaccgtgcggtcaggaactgcccctggaccatgggcctgtggaagaac
tacctgctggccctggagaggcatggggctgaccaccacactatctcagatgtttttgaa
agggccctgaatgctggtttcatacaagccacagattacgttaatatctgggaagcgtac
cttgattacctgaggcggcgcgtcgatttcagtaaaggtgaaaagtcgagcagagagctg
gaggagctgcgggcagccttcacccggtccctggactatatgaaacaggatgtggaagat
aggtttagtgaaagtggagacccctcttgtactatcatgcaggtctgggcaaagatagag
gccttgcattgtaagaacatgcagaaggccagagaactgtgggacagcatcatgacaaaa
gggaacgccaaattcgccaacatgtggttggagtactataacctggagaggtcatacgga
gatgctctccactgcaggaaagccctccacagggccgtccagtgtacctccgactaccca
gagcatgtgtgcgaggtcctgctcacctttgagagggttgagggttctctggaggactgg
gatgcagcggtgcagaagactgagacgcggctgaaccgagtcaatgagcagagggccaag
gtgacagacaaagaggcccatgtggctcgacaggtggaggagaagactgaacagcggcgg
agggccaaggcagacaagaagaaccagaagaagggccagaaaggcagcaggcctggagag
aagcggaaggcagaggacaaggattacgaggatgagtggggagaggaatcggagcaacct
ccaaagaggcaccgaagggagggcgaccaaggcttcagggggggatgtggtgctgaggag
ttcatggggacagagagtgggctgtttgggaggagagccccccctggccgcagacaggaa
ccccctggtactaagaggggccagcaggtggcgccagccaccgtatggaagacccaggaa
gacgaccccgagctacgcaaggatgactgcagtgtgtttatcagtaacctggccttcacc
atggaggatccagagaagaggctgaagaagttgtttgagccctgtggtcctgtccagtca
gtgcgccccgtctatgctgccaagggcttcagagggtactgctacgtacagtttgagggc
aaggcgtctgtggtcgaggccctgaagatggaccggcaagaggtggaaggcaggcccatg
ttcgtatcaccctgtgtggataaaaacaagaaccctgattttaaggtgtttaagtacaac
acaaacctagagaaacacaagatctttatctcgggcctgcccttttcctgcaccaaggag
cagctagaggagctgtgcaaggttcatggcaccattaaagacatccgcttggtcaccaac
cgctcaggcaaacccaagggtctggcgtacgtggagtttggggatgaggctcaggcctcc
caggccgtgctgaagttggatggcacagtactacaggaacacacactctctgttgccatt
agcaacccgcctcgcagaaacactgccgacaagcctggcttcagcagacccatgggagcc
atgatgccccggtctatggtctatggatcgaggggaaaagggcgcacccagctctcatta
ctccctcgttcactacatcggcagactggatcagaaagtaaagcagagaatgggactgca
cctaaacccacagggggcgcatctggagatgctgggattgaagcacaagccaagcccttg
tctaattcagactttgctaaaatgcttttcaaaaagtga
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