Oncorhynchus nerka (sockeye salmon): 115111680
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Entry
115111680 CDS
T07952
Symbol
tfip11
Name
(RefSeq) tuftelin-interacting protein 11
KO
K13103
tuftelin-interacting protein 11
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115111680 (tfip11)
Spliceosome [BR:
one03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115111680 (tfip11)
Other components
Complex C specific factors
115111680 (tfip11)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GCFC
TIP_N
G-patch
G-patch_2
Motif
Other DBs
NCBI-GeneID:
115111680
NCBI-ProteinID:
XP_029493872
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Position
LG27:21364093..21371870
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AA seq
842 aa
AA seq
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MSMSHLYGRQGEEEDEGVEVEKFEVTEWDLANEFNPERRRHRQTKEEAVYGIWAERGDSD
DERPSFGGKRSKDYSAPVSFVSAGLRKSAAEEKQQQQQIDGGSDDSDNDNTPPAQPPPRD
IAPKKLQTGGHFRGNSQSQRTGFAAGIRAGGDLGTWEKHTKGIGQKLLQKMGYVPGKGLG
KNAQGILNPIEAKLRKGKGAVGAYGNERTKQSLQDFPVVDSEEEEEKEFQRELGQWRRDP
AGGGGKKKPKYSYRTVDELKAKGKLAGRTTQTPAGELAQVKVIDMTGREQKVYYSYSQMT
NKLSVPEEAPLSVATREQKTSGFALPELEHNLQLLIDLTEQDILQSSRRLQHERDVVVTL
SHESSGLQTRLGTERDAIQRLEAVLQLVDRFQNGETAPGVGPSLQECAGVFETLQSEFYE
EYKTLGLGDLAAAVVHPLLREKLRTWDPLKDSSYGLEEVGQWRAILESDQLHHANAPEAH
MDPYHRLLWEVWIPVLRVCVSGWQPRMVGPMVDCVEVWAPLLPLWILNHLLEQLLFPRLQ
REVDSWNPLTDTVPIHSWLHPWLPLLQSRLEPLYPPIRSKLANALQRWHPSDGSARLILQ
PWRDVFTPGAWEAFMVKNIIPKLALCLGELVINPHQQQMEPFNWVLDWEGMLSPSSLVSL
LDKHFFSKWLQVLCSWLSNSPNYEEITKWYLGWKSIFSDAVLAQPLVKDKFNEALDIMNR
AVSSGLGGGYMQPGARENIAYLTHTERRKDFQYEALQERRDAESVAQRGIGASLPTNFKD
LIQTKAEENNIVFMPLVAKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDM
AK
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgtcccacctgtacggacggcagggagaggaggaggatgagggggtggaggta
gagaagtttgaggtgacagaatgggacctggccaatgagtttaacccggagcgtcgcaga
cacagacagaccaaagaggaggccgtctatggcatctgggcagagaggggagactccgac
gatgagagacccagcttcggagggaagaggtctaaggactactctgcccctgtgagtttt
gtgagtgctgggctacgcaagtctgcagcagaggagaagcaacaacagcagcagatagat
ggagggtcagatgactctgacaatgacaacactccccctgcccaacccccaccccgcgac
attgcacctaagaaactgcagacgggtggtcatttccgtggcaatagccagtcccagagg
acggggtttgcggccggtatccgagctggaggagacttgggcacttgggagaaacacacc
aaggggattggccagaaactcctccagaagatgggctatgtaccagggaaaggactgggg
aaaaacgcccagggtattttgaatcccatcgaggcaaagcttcggaagggaaagggggcg
gtgggcgcctacggcaacgagagaaccaaacagtcactacaggacttccctgtggttgac
tccgaggaggaggaggagaaggagttccaaagggaactaggtcagtggcgtagggaccct
gcaggtggtggagggaagaagaaaccaaagtattcctacaggactgtagatgagctgaag
gctaaaggcaagctggctggacggaccacacagacacccgctggagaactggctcaggtc
aaggtgatagatatgacaggcagggaacagaaggtgtattacagctacagtcagatgact
aacaaactcagtgtaccagaggaggctccactgagcgtggccacacgtgagcagaagacg
tctggctttgccctgccagagctggaacacaacctgcaactactgatcgacctgacggaa
caagacatactacagtcctcacggcgtctgcagcatgagcgtgatgtggtggtgactcta
agccacgagagctccggtctgcagacgaggctcggaacggaacgggatgccatccagagg
ctagaggcagtactgcagctggtggatcgctttcagaacggggagactgcacccggggta
ggacccagcctgcaggagtgtgctggtgtttttgagactctacagagtgagttctatgag
gagtacaagactctaggtttgggagatctggctgcggctgtagtacatccactactccga
gagaaactacgcacatgggatcctctcaaggacagctcatatggtctggaggaggtgggt
cagtggcgagccatcctggagtctgatcagcttcaccacgccaacgcccctgaagcacac
atggacccataccacaggctgctgtgggaggtgtggatccctgtgctgcgagtgtgtgtg
tcggggtggcagcctcgcatggtaggacccatggtggactgtgtggaggtctgggcccct
ctgctgcccctctggatactaaaccacctcctggaacaactcctcttccccaggctgcag
agagaggtggatagctggaaccccctgacagacacagtgcccatccactcctggctccac
ccctggctgcctctgctccaatcacggctggagcctctctacccgcccatccgcagtaaa
ctggccaatgcgctgcagcgctggcacccgagtgacggctccgcccgcctcatcctccaa
ccatggagagacgtgttcacgcccggtgcctgggaggccttcatggtcaaaaacataatc
cctaaactagctctgtgtctgggggagctggtaataaatcctcaccagcagcagatggag
ccgttcaattgggtgttggattgggagggcatgctgtctccctccagcctcgtatcactg
ctggacaaacacttcttctccaagtggctacaggtgctgtgttcgtggctcagtaacagt
cctaactatgaggagattacaaagtggtacctgggctggaagtccatattcagtgatgct
gttctggctcagccactcgttaaggacaagttcaacgaagctctggacatcatgaaccgc
gctgtctcctctggccttggtggggggtacatgcagcctggtgcccgtgagaacatagca
tacctcacacacacagagcgtcgtaaagacttccagtacgaggctctgcaggagcgccgg
gatgctgagagcgtggcgcagcgaggcattggtgccagcctgcccaccaacttcaaagac
ctgatccagaccaaggcggaggagaacaacattgtcttcatgccgctggttgccaaacgc
cacgagggcaaacagctgtacacctttggacgtatcgtcatctacatagacagaggagtg
gtcttcgtacagggagagaagacctgggtccctacatccctacagagtctcatagatatg
gccaagtga
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