Oncorhynchus nerka (sockeye salmon): 115111691
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Entry
115111691 CDS
T07952
Name
(RefSeq) thrombospondin-4-B-like
KO
K04659
thrombospondin 2/3/4/5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04145
Phagosome
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115111691
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115111691
09144 Cellular community - eukaryotes
04510 Focal adhesion
115111691
09142 Cell motility
04820 Cytoskeleton in muscle cells
115111691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115111691
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115111691
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115111691
Membrane trafficking [BR:
one04131
]
Endocytosis
Phagocytosis
Opsonins
115111691
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115111691
Exosomal proteins of colorectal cancer cells
115111691
Exosomal proteins of bladder cancer cells
115111691
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115111691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
EGF_3
COMP
EGF
cEGF
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
115111691
NCBI-ProteinID:
XP_029493887
LinkDB
All DBs
Position
LG27:complement(21725504..21737732)
Genome browser
AA seq
947 aa
AA seq
DB search
MGVWIRKVVLSLLMLQLATTVTAQGIVYDLLVSPDCLPDLTQGGLKNKGLDEAFLLSSFR
LHSKSPSHLYSIINPRDNSKYLEFTLQAKLNKVTIRYQKTDGRAGTTSFSHPSLADGKEH
HVMIHASGLQRGPGRMAVYVDCRLAHTVDELPAAFGSLTPGHNKVALRTLQPTGQDELTD
LKLVIEDTIDNVATLQDCSRQQSESLGTIQLLGLQAGGQDPSQMLELHKMMSEMKDLLLQ
QIKETTFLKNTISECLACGLGDNMASGPGTGPRSGPSKCSPGMCFNQDMCIPAEGGRFTC
APCPDGYTGDGVHCDDVNECQFNPCFPGVRCVNTAPGFRCERCPLGYTGLEINGVGVSYA
QSHKQVCDDVDECQGPPDNGGCTANSHCHNTRGSFHCGECKSGFSGDQVSGCSGGRLCGN
GQPNPCDSNAQCVVERDGSVSCECDIGWAGNGYVCGKDTDIDAYPDDKLRCRDNNCKKDN
CMFVPNSGQEDADRDGLGDACDDDADSDGIVNIEDNCWLHPNVNQMNSDKDLHGDACDNC
LTTENPDQRDTDKDGLGDDCDDDMDGDGLKNILDNCQRVANLDQRDRDNDGVGDACDSCP
DMVNPNQSDVDDDLVGDTCDTNIDSDGDGHQNTKDNCPTVINSSQLDTDKDGQGDECDDD
DDNDGILDQADNCRLVVNPDQTDEDNDGVGDTCAGDFDQDKVIDRIDNCPENAEVTLTDF
RAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTL
TDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQAVPFRAVAEPGIQLKAVKSKTGPGEYLR
NSLWHTGDTNDQVRLLWKDKRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGPNLVADSGV
KIDNSMRGGRLGVFCFSQENIIWSNLKYRCNDTIPEDYQEYSARNTE
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgtggatcagaaaagtggtcctctctctgctgatgctacaactggccacgact
gtcacagcacaaggcattgtgtacgacctgctggtgtctccagactgcctgcctgacctg
acgcagggagggctgaagaataaaggtctggatgaggccttcctcctctcctccttcagg
ctccatagcaagtccccctctcatctctacagcatcatcaaccccagggacaacagcaag
tacctggagttcaccctgcaggccaaactcaacaaggtgacgatccgttaccagaagact
gatggtagggctggcaccaccagttttagccacccctctctggcggacggcaaggagcat
catgtgatgatccatgccagcggtctgcagagaggaccaggtcgtatggcggtctacgta
gactgtagactggctcacactgtggacgagctgcctgctgccttcgggtcgctgacacct
ggacacaacaaggtggcgcttaggaccctgcagcccaccgggcaggatgagttgacggac
ctgaaactggtgatagaggacacgatagataacgtcgctacgctccaggactgcagcaga
cagcagagcgagtctctgggtactattcagctactgggcctccaggcaggtggacaggat
ccgtctcagatgttagagctccacaagatgatgtcagagatgaaggacctgctcctccag
cagattaaggagaccacattcctcaaaaacaccatctcagagtgtctggcatgtggtctg
ggtgacaacatggcgtcaggcccaggtacaggtccacggtcaggcccgtccaagtgtagt
ccaggtatgtgtttcaatcaggacatgtgtatcccggccgagggaggacgcttcacctgc
gccccctgccctgacggatacactggagacggagttcactgtgatgacgtgaacgagtgc
cagtttaacccctgcttccccggcgtgaggtgtgtgaacacagctcctgggttccgctgt
gagagatgccctctgggatacactggtcttgagatcaacggagtgggagtgtcctacgca
cagtcacacaaacaggtgtgtgatgacgtagatgaatgccagggtcctccagacaacgga
ggctgcaccgccaactctcactgccacaacaccaggggttcattccattgtggggagtgt
aagagtggcttctctggggaccaggtgagcggctgcagtggtgggaggctctgtgggaat
ggccagcccaacccctgtgacagcaatgcacagtgtgtagttgagagagacgggagtgtt
agctgcgagtgtgacatagggtgggcaggtaatggctatgtgtgtgggaaggacacagac
atcgatgcttacccagacgacaagctaaggtgcagggacaacaactgtaagaaggacaac
tgtatgtttgttcctaactctggccaagaggacgcagacagggacgggctcggggacgcc
tgtgatgatgacgctgatagcgacggcatcgttaacatagaggataactgttggctgcat
cctaacgtgaaccagatgaacagcgataaggatctccatggcgacgcgtgtgacaactgc
ttgacgacggagaaccctgatcaacgagacacggacaaggacgggctaggcgatgactgt
gacgatgacatggatggagacggtctgaagaacattctggataactgccagcgtgtggcc
aacctagaccagagggacagagacaacgatggggtgggagacgcctgtgacagctgccct
gacatggtcaaccccaaccagtcagatgttgatgatgatcttgtaggagacacatgtgac
accaacatagacagtgatggggacggtcaccagaacactaaggacaactgtcctacagtc
atcaactcctcccagctggacacagataaggacggacagggagacgagtgtgacgatgac
gatgacaacgacggtatcctggaccaagcagacaactgcagactggtggtcaaccctgac
cagacagatgaggacaatgacggcgtgggtgatacgtgtgcaggggactttgaccaggac
aaggtgattgacaggatagacaactgtccagagaatgctgaggtcaccctgacagacttc
agagcctatcagacggtagtactggaccctgagggtgacgcccagattgatcccaactgg
gtggttctcaaccagggtatggagatagtccagactatgaactctgaccctggcctcgct
gtaggctacacagcgttcagtggggtggactttgagggcacgttccacgtgaacacattg
actgatgatgactatgcaggcttcatcttcggctaccaggactcctcctccttctacgtg
gtcatgtggaaacagactgagcagacctactggcaggctgtacccttcagagctgtggct
gagcctggcatacagctcaaggcagtgaagtctaagacaggtccaggggagtacctgagg
aactccctgtggcatacaggagacaccaacgaccaggtacgtctgctgtggaaggacaag
aggaacgtgggttggaaggacaaggtgtcctaccgctggtatctacagcacagaccacag
gttggatacatcagggcgcgtttctatgagggtcccaacctggtagcagattctggggtg
aagatagacaacagtatgcgaggagggagactgggagtcttctgtttctcccaggaaaac
atcatctggtccaacctcaagtaccgctgcaatgacaccatccctgaagattaccaggag
tacagtgcccggaacactgaataa
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