Oncorhynchus nerka (sockeye salmon): 115111728
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Entry
115111728 CDS
T07952
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04142
Lysosome
one04144
Endocytosis
one05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115111728
04142 Lysosome
115111728
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
115111728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115111728
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115111728
Membrane trafficking [BR:
one04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
115111728
Exosome [BR:
one04147
]
Exosomal proteins
Proteins found in most exosomes
115111728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
IFS
Gp18_dom_I
capSnatchArena
Motif
Other DBs
NCBI-GeneID:
115111728
NCBI-ProteinID:
XP_029493941
LinkDB
All DBs
Position
LG27:22675018..22718430
Genome browser
AA seq
1683 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIIDMADPNN
PSRRPISADSAIMNPASKVIALKAAKCLQIFNIEMKSKMKAHTMTEEVMFWKWISVNTVA
LVTEAAVYHWSMEGDSQPIKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAAAFGEFKVEGNTKASTLFCFAVRSQAGGKLHIIEVGQPATGN
QPFTKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHLYDLESGVCIYMNRISA
ETIFVTAPHELTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLGLRMAVRSNLAGA
EELFARKFNTLFAQGSYSEAAKVAASTPKGILRTAETIRKFQSVPAQPGQASPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECCEELGDLVKAVDPTLALSVYL
RANVPSKVIQCFAETGQFQKIVLYAKKVGYSPDWVFLLRNVMRVSPEQGLQFSQMLVADE
EPLANINQIVDVFMEGSLIQQCTSFLLDALKNNQPAEGHLQTRLLEMNLIHAPQVADAIL
GNQMFSHYDRAHIAQLCEKAGLQQRALEHYTDLFDIKRAVVHTHLLNPEWLVNFFGALSV
EDSVECLRAMLSANIRQNLQLCVQVASKYHEQLGTNTLVELFESFKSYEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPDRVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQF
STDELVAEVEKRNRLKLLLSWLESRIHEGCEEPATHNALAKIYIDSNNTPERFLKENTFY
DSAVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWANVL
EENNPYRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYVNRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNTS
AIQVLIEQISNLDRAYEFAERCNEAAVWSQLARAQLQRDLVKEAIDSYIKADDPSAYMEV
VSAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTVRLAELEEFVSGPNNAHIQQ
VGDRCYEEGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCCAC
VDGEEFRLAQICGLHIVIHADELEELISYYQDRGYYEELIGLLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVLTMMS
HPTDAWKEVQFKDIIAKVANVELYYKSLSFYLDNKPLLTNDLLTILSPRLDHSRTVSYFT
KVNQLKLVKPYLRSVQSHNNKGVNEALNNLLTEEEDYQGLRASIDAYDNFDTIGLAQRLE
KHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDGMLYAAESKDAELAETLLQWFLEE
GRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDEVEEKVTVD
KLEESESQRKTEEEVTEPTPIVFGQQLMLTAGSAPVAPQPGYPGGYGYAAPGYSPQPPYN
YNM
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atggcccagatactgccgatacgatttcaggaacatctgcagctgcagaacctgggggtg
aacccggctaacattggtttcagctacctgaccatggagtctgacaagttcatctgcatc
cgggagaaggtgggcgagcagaaccaggtggtgatcatagacatggctgaccccaataac
cccagcagacgtcctatctctgctgacagtgccatcatgaaccctgccagcaaggtcatc
gccctcaaagctgctaagtgcctgcagatcttcaacattgagatgaagagtaagatgaag
gctcacaccatgaccgaggaagtcatgttctggaagtggatctctgtcaacaccgtcgcc
ttggtgactgaagcggccgtctaccattggagcatggagggggactcgcagcccatcaaa
gtgtttgatcggcacgctagtctggccggatgccagatcataaactacagaacagacgaa
cagcagaagtggctcctccttatagggatctcggcacagcaaaaccgtgtggtgggggcc
atgcagctgtactctgtggacaggaaggtgtcccagcccatcgaaggccatgctgcagcc
ttcggagagtttaaggtggagggcaacaccaaagcctccactctgttctgcttcgctgtg
cgcagccaggctgggggcaagctgcacatcatagaggtgggtcagccggctacagggaac
cagccgtttactaagaaggctgttgacgtgttcttcccacctgaggctcagacagacttc
cccgtcgccatgcagattggcaccaagcacggtgtgatctacctgatcacgaagtatggc
tacatccacctgtacgacctggagtcaggagtgtgtatctacatgaaccgcatcagtgcc
gagaccatcttcgtcaccgccccccacgaactcacctctggcatcatcggggttaacaag
aagggacaggtgttgtcagtgtgtgtggaggaggaaaacatagtgaactatgccaccaac
gtgctgcagaacccagacctgggcctgaggatggccgtgcgttctaacctggccggggct
gaggagctgtttgccaggaagttcaacacactgttcgcccagggctcctactccgaggct
gccaaggtggccgcatccacacccaagggtatcctgcgcacagcggagaccatccgtaag
ttccagagtgtgccagcccagccgggccaggcctctcctctgctgcagtactttggcatc
ctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtgcta
cagcaaggacgcaagcagctgctggagaagtggctgaaagaggacaagctggagtgttgt
gaggagcttggtgacctggttaaggcagtagatcctacgctagccctcagtgtctacctc
agagccaacgtacccagcaaggtgatccagtgctttgctgagaccggacagttccagaag
atagtgctctacgccaaaaaggtgggctactctccagactgggtgtttctgttgaggaat
gtgatgcgggtcagtccagaacagggtctacagttctctcagatgctggtggcagatgag
gagcccctggccaacatcaaccagatagtggatgtgttcatggagggaagtctgatccag
cagtgtacctccttcctattggacgctctgaagaacaatcagccagccgagggacaccta
cagacacgcctactggagatgaacctcatccacgccccccaggtagccgacgcgatcctt
ggcaaccagatgtttagtcactatgaccgtgcccacatcgcccagctgtgtgagaaggct
ggactgcaacagagggctctagagcactacactgacctgttcgacatcaaacgggctgtc
gtacacacacacctgctcaaccctgagtggctggtgaacttctttggcgccctgtcagta
gaggactcagtagagtgtcttcgggccatgttatcagccaacatccgacagaaccttcag
ctgtgtgtccaggtggcatctaaataccacgagcagctgggaacaaacaccctggtggag
ctctttgagtccttcaagagctacgagggtctgttctacttcctgggctccatagtgaac
ttcagccaggaccctgatgtccattttaaatacatccaggcggcctgtaagacagggcag
atcaaggaagtggagcgcatctgtagagagagcaactgttacgacccggacagggtcaag
aacttcctcaaggaggctaaattgacagaccagctgccgttgatcatagtgtgtgaccgc
tttgactttgtccatgacctggtgctctatctctaccgcaacactctgcagaagtacata
gagatttacgttcagaaggtgaaccccagccgtctgcctgtggtgataggaggtctgttg
gatgtagactgtgctgaagacgtcattaagaacctgatcatggtggtgagagggcagttc
tccactgatgagctggtggcagaggtggagaagaggaacagactgaagctgttgttgtcg
tggcttgagtctcgtatccacgagggctgtgaagagccggctacccacaatgccttggct
aagatctacattgacagtaacaacaccccggagcgcttcctgaaggagaacaccttctac
gacagcgctgtagtggggaagtattgtgagaagagagacccccacctcgcctgtgtcgct
tatgagaggggccagtgtgacctggaccttatcaaggtgtgcaatgagaactccctgttc
aagagtgaggctcgctacctggtccgacggaaagacccagaactatgggccaacgttctt
gaggagaataacccttatagacgccaactcatagaccaggtggtgcagaccgctctgtca
gagacccaggacccagaggaggtgtctgtgacggtcaaggccttcatgacagctgacctg
cccaatgagctcattgaactactggagaagattgtattggacaactcagtcttcagcgag
caccgaaacctccagaacctgttgatcctgacggccatcaaggcagaccggacgcgtgtg
atggagtacgtcaaccgcctggacaactacgatgcccccgacattgctaacatcgccatc
agcaacgagctcttcgaggaggccttcgccatcttcaagaagtttgacgtcaacacctcc
gccattcaggtcctgatcgagcaaatcagtaacctggacagagcctatgagtttgcagag
cgttgtaatgaggctgcggtatggagtcaactggccagagcccagctccagagagacctg
gttaaagaggccatcgattcctacatcaaagccgacgacccgtcggcctacatggaggtg
gtcagcgctgccagcaagaacaataactgggaggatctggtgaagttccttcagatggct
cgtaagaaggccagagagtcgtatgtagagacagagctcatctttgctctggctaaaact
gtcagactggccgaactagaggaatttgtcagcggccctaacaacgcccatatacaacag
gtgggagataggtgttatgaagaagggatgtacgatgctgccaagctgctgtacaataac
gtgtccaactttgcccgcctggcatccacgctggtacacctaggagagtaccaagctgct
gtggacagcgccaggaaagccaacagcacacgcacctggaaggaggtgtgttgtgcgtgt
gtggatggggaagagtttcgattggctcagatctgtggtctacacattgttatccacgct
gatgaactggaggagctcatcagctactaccaggaccggggttactatgaggagctgata
ggcctgttggaggccgcgttgggtttggagcgcgctcacatgggcatgttcacagagctg
gccatcctctactccaaatttaaaccccagaagatgagagaacacctggaactcttctgg
tcccgcgtcaacatccctaaggtgctgcgagcggcggagcagtcccatctgtgggcggag
ttagtgtttctgtatgataaatacgaggaatatgacaacgctgtcctcacgatgatgtca
caccctacggacgcttggaaggaggtgcagttcaaggacatcattgccaaggtggccaat
gtggagctgtactacaaatccctttccttttacctggacaacaaacctctgctgacgaat
gaccttctgaccatactgtcaccacggttagaccacagccgcacggtcagctacttcacc
aaggttaaccagttgaagttggtaaagccttacctgaggtcagtccagagtcataacaac
aagggagtcaacgaggccctcaataacctgctgacagaggaggaggactaccagggtctg
agggcgtctatcgatgcatatgataactttgacaccattggtttggcccagagactggag
aagcatgagctgattgagttcagacgcatcgcagcatacctctacaaaggcaacaaccgc
tggagacagagcgtggaactctgcaagaaggacaaattatacaaggatggaatgctgtac
gctgctgagtctaaggatgctgagctggctgagaccctgttgcagtggttcctggaggag
ggcaggaaggagtgtttcgctgcctgtctgtttgcctcctacgacctgttgcaccctgac
gtggtgctggagctggcctggagacacaacatcatggactttgccatgccatacttcatc
caagtcatgagggagtacctcaccaaggttgatgaggttgaggagaaggtgacggtggat
aaactggaggagtcagaaagccaaaggaagactgaggaagaagtcacagaacccaccccc
atagttttcggtcagcagctgatgttgacggcaggctcggctccagtggcaccccagcct
ggatacccaggaggctacggatacgctgccccaggctactccccccagcccccctacaac
tacaacatgtag
DBGET
integrated database retrieval system
