Oncorhynchus nerka (sockeye salmon): 115111762
Help
Entry
115111762 CDS
T07952
Symbol
arvcf
Name
(RefSeq) armadillo repeat protein deleted in velo-cardio-facial syndrome isoform X1
KO
K28154
splicing regulator ARVCF
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115111762 (arvcf)
Spliceosome [BR:
one03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
115111762 (arvcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT_2
Arm_2
Cnd1
Atx10homo_assoc
Motif
Other DBs
NCBI-GeneID:
115111762
NCBI-ProteinID:
XP_029494012
LinkDB
All DBs
Position
LG27:24843781..24972942
Genome browser
AA seq
1090 aa
AA seq
DB search
MEDYEVCSAASILASVKEQEARFERLTRALEEERRNVSLQLERSNITADRLGGTGPNANL
PPNSQPLAWQQVVMQEQSPSNQTSLAMMQEPQEMVEETVTIEEDPGTPTSHVSVVTSDDG
TTRRTETKDMSTNLKVTRVIKTITRHTYLPVTIIETPVVPEGSISPQSKPSTSSPTPSQT
DTVTKMVKTVTTRTVRQVPLGPDGLPLPEGSSPLGSYTDSIDRRYLKNGERYITTPQATS
TLTRSYNNYNDSYTDTLPPDAGGSHYGGRHYGLHDGYGIGDVTDNYGSLSRGVNFRPPRY
PYAMANSYRTENSYGTLPIRKDDYGHVAQPQVPMGSSSVDLNRSQPERFQPEPYGLEDDR
RSLGPEEEEPYDLDPDYSTASRRQGTLPGTNRGRTVREPLRDGPRVRGYDDPIEAELVDE
RHPYIHGMYAAPLAQPERGSMASLDRLAGRRSPSIDSIRKDPRWRDPDLQEVIAMLGHPI
DPVKSNAAAYLQHLCYENDKIKKDVRQLKGIPVLAGLLDHPKAEVHRKACGALRNISYGK
DHDNKVAIKNCDGIPALIRLLRKTNDMEVRELITGTLWNLSSYEPLKMVIINHGLQTMTN
EVIIPHSGWEHEPNEDSKPRDAEWTTVFKNTSGCLRNVSSDGAEARRRLRECEGLVDALL
HALQSAVGKKDMDNKSVENCVCIMRNLSYHVHKEIPGAEKFTDPSVLQAPGSVGPQRKKK
DDAGCFGGKKAKEEWFNQGRKNGENAKSYDTLDLPKRTEPTKGFELLYQPEVVRLYLSLL
TESQNYNTLEAAAGALQNLSAGQWTWSNYIRATVRKEKGLPILVELLRSDADKVVRAVAI
ALRNLSIDRRNKDLIGSYAMRDLVSNLPSGQQRPAKNLEEDTVVAILNTIHEIVTDSSEN
ARSLIQAQAIEKLVAINKTSQSPRENKAASHVLQTVWSYKDLRNALTKEGWNKSHFQSTA
SGAPKAAKNGKPGYDDTTLPLMEKNQGQSVTAGETGDPPGLAYCGELSTKKNGSGDMIPM
DELGPDGYSTIDQRDKDCKYKSSGDGSVDLTEREPLKNETNRKHYVRSNRPAVNLVDACD
VKPQPVDSWV
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggaggactatgaggtgtgctcggccgccagtattctggcatcggtgaaagagcaggag
gcgcgtttcgagcgtctgacccgggcgctggaggaggagcgacgcaacgtctccctgcag
ctggagcgttccaacataacagccgacaggctgggagggactgggcctaatgctaacctg
ccacccaacagccaacccctggcctggcagcaggtggtgatgcaggagcagagccccagt
aaccagacgtctctggccatgatgcaggagccccaggagatggtggaggagacggtcacc
attgaggaggaccctggcacgcccacctcccacgtttccgtagtcacctccgacgatggc
accacgcgacgcacagaaaccaaggatatgtcaactaacctgaaggtgaccagggtgatc
aaaaccatcacccgccacacttacctgccagtgaccatcatcgagaccccggtggtgccg
gaaggttccatctcaccgcagtccaaacccagcacctcttctcccaccccgtcacagaca
gacacagtgacgaagatggtgaagacggtgaccacgcggacggttcgacaggtgcccctg
ggccccgacggcctgcccctacccgagggctcctccccactgggcagctacacagactcc
atcgaccggcgctacctgaagaacggcgagcgctatatcaccacgccgcaggccacctcc
acgctcacacgctcctacaacaactacaacgactcctacaccgacacgctcccccccgat
gccggcgggagccattatggtgggcgccactatggcctccacgacggctacgggattgga
gacgtgacagacaactacggcagcctgtcgcgtggcgtcaacttccggccgccccgctat
ccctacgccatggctaacagctaccggacggagaacagctacgggaccttacccattcgg
aaggatgactacggccacgtggcccagcctcaggtgcccatgggcagcagcagtgtggac
ctgaaccggtcccagccagaacgcttccagccagagccctacggactggaggacgaccgc
cgcagcctgggccctgaggaggaggagccctatgacctggaccctgactactccaccgcc
agccggcgccaaggcacgctgcctggcaccaaccgcggcaggaccgtgagagagccactc
cgtgacgggccacgtgtcagggggtacgatgaccccatcgaggcagagctggttgacgag
cgacacccctacatccatggcatgtacgcggcccccctggcccagcccgagagggggagc
atggccagcctggaccgcctagctggccgccgctcgccctccatagacagcatccgcaag
gacccgcgctggcgtgaccctgacctgcaagaggtcatcgccatgctgggtcaccctatc
gacccggtcaagtccaacgccgccgcctacctgcagcacctgtgctacgagaacgacaag
atcaagaaggatgtgcgccagctgaaggggatccctgtgctggcagggttgctggaccac
cccaaggctgaggtccaccgcaaggcctgtggagccctgaggaacatctcctacggcaag
gaccacgacaacaaggtggccatcaagaactgcgatggtatcccagccctcatccgcctg
ctgaggaagaccaacgacatggaggtccgtgagctcatcacagggaccctgtggaacctg
tcttcctatgagcctctgaagatggtgattataaaccacgggcttcagactatgaccaac
gaggtcatcatcccccactcaggctgggagcacgagcccaacgaggactccaagccccgc
gacgcagagtggaccaccgtcttcaagaacacctctggttgtctgaggaacgtgagttcg
gacggggccgaggcgaggcgcaggctgagggagtgtgaggggctggtggacgctctgctc
cacgccctgcagtccgctgtggggaagaaagacatggacaacaagtctgtggagaactgt
gtgtgtatcatgaggaacctgtcctaccacgttcacaaggagatcccaggggccgagaag
ttcacagacccatcagtgctgcaggccccgggctctgtgggccctcagaggaagaagaag
gatgacgcaggctgcttcggagggaagaaggccaaagaggagtggtttaatcaaggcagg
aaaaacggagagaatgccaaaagctacgacacgctggatctccccaaacgcactgaaccc
acaaaaggttttgagctgctgtaccagccagaggtagtgaggctgtacctgtctctgctc
actgagagccagaactacaacactctggaggctgcagcaggggccctgcagaacctcagt
gccggacagtggacctggtccaactacatacgagccactgtgaggaaggagaagggtctc
cccatcctggtggagctgctgcgttctgatgctgacaaggtggtccgagccgtggccatc
gccctgcgtaacctctccatcgaccgccgcaacaaagacctgatcgggagctatgccatg
agggacctggtgagtaacctgcccagtggtcagcagcggccagctaagaacctggaggaa
gacacagtggtggccatcctcaacaccatccacgagatcgtgacggacagctctgagaac
gcacgctccctcatccaggcccaggccatcgagaaactggtggccatcaacaagacaagc
caatcaccacgtgagaacaaggctgcctcccacgtgctgcagacggtgtggagctacaag
gacctgaggaacgccctgaccaaggaaggatggaataagagccacttccagtctacagca
agcggcgcccctaaagcagccaagaatggcaaaccaggctacgacgacacaaccctgccc
ctgatggagaagaaccaaggtcagtctgtgacggcaggcgagactggggatcctccgggc
ctggcctactgtggtgaactgagcaccaagaaaaatggaagtggtgatatgatacctatg
gacgagcttggtccagatggctactccaccatcgaccagagagataaggactgcaagtac
aagagtagtggcgacgggtcagtggacctgacagaacgggagccattgaagaatgagaca
aataggaaacactatgtcaggagtaacaggcctgcagtcaatctggtggatgcttgtgac
gttaaacctcagcctgttgactcctgggtctaa
DBGET
integrated database retrieval system
