Oncorhynchus nerka (sockeye salmon): 115112025
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Entry
115112025 CDS
T07952
Symbol
lrp4
Name
(RefSeq) low-density lipoprotein receptor-related protein 4 isoform X1
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115112025 (lrp4)
Membrane trafficking [BR:
one04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
115112025 (lrp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
Ldl_recept_a
FXa_inhibition
SGL
Vgb_lyase
cEGF
EGF_LRP2
DUF5050
EGF_CA
UPF0113
Motif
Other DBs
NCBI-GeneID:
115112025
NCBI-ProteinID:
XP_029494529
LinkDB
All DBs
Position
LG27:complement(40333475..40565683)
Genome browser
AA seq
1917 aa
AA seq
DB search
MQVSVVLCSMITFFLRSQGVLGSAECSCGRNHFTCAVSAFGECTCIPAQWQCDGDNDCGD
HSDEDGCMLPTCSPLDFHCDNGKCIRRSWVCDGDNDCEDDSDEQDCPPRECEEDEFHCQN
GYCIRSLWHCDGDNDCGDNSDELCDMRKCSDKEFRCTDGSCIAEHWYCDGDTDCKDGSDE
ENCPSDVMTATCSVEEFQCAYGRCILDIYHCDGDDDCGDWSDESDCSSHQPCRSVEFMCS
SGMCINAGWRCDGEFDCDDQSDEKNCTTSMCTADQFRCASGRCVRLSWRCDGEDDCSDGS
DEDDCEKTDTPPCAPDQFLCGNGRCIGQRKVCNEVSDCGDGTDEHPHQDCRPRSSDGNCN
LNNGGCSQKCQMARGLVQCTCHTGYRLMEDGRACQDVDECAEEGYCSQGCTNTEGGFQCW
CVQGYELRPDKRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHNQ
ELVFWSDVTLDRIMKANLNGSNVEEVVSTGLESPGGLAIDWIHDKLYWTDSGTSRIEVAN
LDGTHRKVLLWQSMEKPRAIALHPIEGKIYWTDWGNTPRIEYANMDGSNRRVIADTHLFW
PNGLTIDYAGHRMYWVDAKHHVIERADLDGRNRKAVISQGLPHPFAITVFEDSLYWTDWH
TKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGGRNRCGTNNGGCSHLCLPGNK
TYTCDCPTGFKKVDQHNCALSLDKFLLFARRTDIRRISFDTEDMSDDVIPLADVRNAVAL
DWHAEEGFIYWTDVTTDSINRAQWDGSRQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTD
RIEVSNADGSMRTVLIWENLDRPRDIVVDPIGGYMYWTDWGVSPKIERAGMDASSRIVII
SSNLTWPNGLAIDYQTQRLYWADAGMKTIEFGNFDGSDRQVLIGSQLPHPFGLTLHEEKL
YWTDWQSKSIQCANKMTGLGRQTLAENLENLMDIHMFHRYRTTVRTPCAVNNGGCSHLCL
LAPPTKGSSCTCPTGINLQLDGKTCTHGMSSFLIFARRTDIRMVSLDIPYFADVVLAVNR
SMKNTIAIGVDPKEGKVYWSDSTLKKVSRANINGTAHEDIIATGLMTTDGLAVDAVGRKI
YWTDTGTNRIEVANLDGSMRKVLIWQNLDSPRAIALYHEMGYMYWTDWGEHAKLERSAMD
GSDRLVLISNNLGWPNGLAIDSAGSQLLWADAHTERIEAADLNGLNRRTLVSPVQHPYGL
TLLGPHIYWTDWQSRSIQRADKTTGANTITVRSNLPGLMDIQAVDREKPLGFNKCGRRNG
GCSHLCLPRPNGTSCACPTGILLKGDARSCDDSPETYLLFSNRVSVRRISLDTNDHTDVH
VPVPELHNVISLDYDSVDGKLYYTDVSLDVIRRANLDGTGMETVISQGLKTTDGLAVDWV
TRNMYWTDTGRNTIEVARLDGTSRKVLVNNSLDEPRAIAVFPSKGYLFWTDWGHIAKIER
AHLDGSDRKVLINTDLGWPNGLTLDYDTRRIFWVDAHLDRIESSDLNGKLRQILISPVSH
PFALTQLKPVSSPLTPFSRLSQQDRWIYWTDWQTKSIQRVDKHTGRSKETVLANVEGLMD
IIIVSPQRQSGTNHCGVNNGGCTHLCFANTNSFVCACPDEPDSRPCSTISGYVPTSPDRE
TTSTPAPNKIPKAPTDTPQQGPPLINCTDKSLSVEGCLESNVVTAPHGEGLHISYVIGGA
LTILAILIIITAFIIYRHKKSKFADPGVSNLTYSNPSYRTSTQEVKIETSQKPPIYNQLR
YKKEGGGDSGYTKEKIRIVEGVCLLSSEELYWEDLKQLKPSRGGLHTCMRTDTVSLQASS
ASLDDGETEQLLQEETSECSSINTLTPVTVTPQRHPQHSLPDTGWTPARKPSTESEV
NT seq
5754 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtctctgtggtgctgtgtagcatgataactttctttcttcgcagtcaaggcgtg
ttgggcagtgcggagtgttcatgcgggcgcaaccacttcacgtgtgcagtgagcgcgttt
ggggagtgtacatgtatcccggcccagtggcagtgtgacggggacaacgactgtggagat
cacagcgacgaggatggatgcatgctgcccacctgctctccactggacttccactgtgac
aatgggaagtgtatccgccgctcctgggtgtgtgacggggacaacgactgtgaggatgac
tccgacgaacaggactgtcctcctagagagtgtgaagaggatgagttccattgtcagaac
ggctactgcatccgcagcctgtggcactgtgatggggacaatgactgtggggataacagt
gacgagctgtgtgacatgcgtaagtgttccgataaggagtttcgctgtacagatgggagc
tgcattgctgaacactggtactgtgatggagacactgactgcaaggacggatcagacgag
gaaaactgcccatctgatgtaatgacggccacttgtagtgttgaagagttccaatgtgcg
tacggacgctgtattctggacatttaccactgtgacggagatgacgactgtggagactgg
tctgatgagtccgactgctcctcccaccagccttgtcgttctgtggagttcatgtgcagc
agtgggatgtgcatcaacgctggctggaggtgtgacggggagtttgactgtgatgaccaa
tcagatgagaagaactgcaccacctccatgtgtactgcggatcagttccgctgtgcatcg
ggacgctgtgtcaggttgtcatggagatgtgacggagaggatgactgctctgacggcagc
gatgaagatgactgtgagaagactgacacccctccatgtgctccagaccagtttctgtgt
ggtaacggccgctgtattggccagaggaaggtctgtaatgaggtcagcgactgtggagat
gggactgatgaacaccctcaccaggactgccgcccgcggtccagcgatggcaactgtaac
ctgaataacggaggctgttctcagaaatgtcagatggccagaggtctggtacagtgtacc
tgtcatactggctacagactgatggaggatggcagggcctgccaggatgtggatgagtgt
gcagaggagggctactgcagccagggctgtaccaacacagagggagggttccagtgctgg
tgtgtgcagggctatgagctgaggcctgacaagcgcagctgcaaggcgctgggtcctgag
ccagtgctgctgtttgcgaaccgtatagacatccgccaggttttgcctcaccggtcagag
tacactctgctgctgaacaacctggaaaatgccatcgctctggacttccaccacaaccag
gagctggtcttctggtctgatgtcacgctcgatcgcatcatgaaggctaacctaaacggg
agcaatgtggaggaagtggtttccactggcttagagagtccaggtggtctggctatagac
tggatccatgacaagctatactggactgactcagggacgtcccgtattgaggtggccaat
ctggatggaacccaccgcaaggtcctcctatggcagagcatggagaaaccccgagccatc
gcactgcaccctatagagggtaagatctactggacggactggggtaacactcctcgtatc
gagtatgccaacatggatggctccaaccgccgcgtcatcgccgacacccacttgttctgg
cccaacgggctgaccatcgactacgccgggcaccgtatgtactgggtggacgccaagcat
cacgtcatcgaaagagctgaccttgacggacggaaccgtaaggccgtcatcagccaaggc
ttgccccatccatttgccatcacggtatttgaggatagcctttactggacagactggcac
accaagagcatcaacagtgccaacaagttcacaggcaagaaccaggagatcatcagaaac
aagctgcacttcccaatggatatacacacactgcacccgcagagacagcccgcaggtggg
cgtaaccgatgtgggaccaacaacgggggctgcagccacctctgtctccctggcaacaag
acctatacctgcgactgccccacgggcttcaagaaagtggaccagcataactgtgccctg
agtcttgacaagttcctgctttttgcccgaaggacggacatccgacgaatcagcttcgac
accgaggacatgtcggatgatgtcatcccgctggccgacgtacgcaacgccgtggcactg
gactggcatgccgaggagggcttcatctattggacggacgtcaccaccgactccatcaac
cgggcccaatgggacggctcaaggcaggaggtggtggtggacaccagtctggaaagtcca
gccggtctggctattgactgggtgaccaacaaactttactggaccgacgcaggtacagat
cgtatcgaggtatctaatgcagacgggagcatgcgtactgttctgatctgggagaatctt
gaccgacccagggacatcgtggttgacccaattggaggatatatgtactggacagactgg
ggtgtgagtcctaagatagagcgggcagggatggacgcatccagccgtatcgtcatcatc
tcttccaacctgacatggcctaacggactggcaattgactaccaaacacagcgcctgtac
tgggccgatgccgggatgaagaccatcgagtttggcaactttgatggctcagacagacag
gtgttgattggcagtcagttgccccacccctttgggctgactctgcatgaggagaagctc
tattggacagactggcagtcaaagagcatccagtgtgccaacaaaatgactggcctggga
cgacagacactcgccgagaacctggagaacctcatggatattcacatgttccaccgctac
cgcaccaccgtgcggacaccttgtgcggtgaataatgggggctgcagtcacctgtgtctg
ttggctccacccacaaaaggctccagctgtacctgtcctaccggcatcaaccttcagctg
gacggaaagacctgcacacacgggatgagtagtttcctgatctttgcacggcggactgat
atcaggatggtctctctggacatcccctactttgctgatgtggtgctggctgtcaacaga
tccatgaaaaacaccatcgccatcggagtggaccctaaagagggtaaagtgtactggtca
gacagcacactgaagaaggtgagtagagctaacatcaatgggacagctcatgaggatatc
atcgctacaggtctgatgaccactgatggtctggcggtggatgcggtgggtcgcaagatc
tactggacggacaccggaacgaaccggatagaggtggccaacctggacggctccatgagg
aaggttctgatctggcagaacctggacagcccgcgagccatcgccctctaccacgagatg
gggtatatgtactggacagactggggggagcatgctaagctggagcggtcagcgatggat
ggctcagaccgtttggttctgatcagtaacaaccttggctggcccaacggactggccatc
gacagtgccggctcacagctactgtgggctgacgcacacacagagcgcatcgaggcggca
gacctgaatgggctgaaccgccgtaccctggtatccccggttcagcacccgtacggtctg
accctactaggaccacacatctactggaccgactggcagagccgcagcatccagcgggct
gacaaaaccaccggcgccaacaccatcaccgtgcgcagcaacctgcccgggctcatggac
atacaggccgtggatagagagaagccactgggtttcaataagtgtggtagaaggaacggg
ggctgtagccacctgtgtctgccccgccccaacggtacttcctgtgcctgtcccaccggc
atcctcctcaagggggatgccaggtcatgtgacgactcccccgagacctacctgctcttc
tccaaccgggtcagcgtgcgacgcatctccctggacacaaatgaccacacagatgtgcat
gtgcccgtgcctgagctgcacaacgtcatctcactggactacgacagcgtggacgggaag
ctgtactacaccgatgtcagccttgatgttatcagacgggccaacctggatggtacaggg
atggagacagtgataagccagggtctgaagactactgatggtctggctgtggactgggtg
accaggaatatgtactggacggacacaggtcgcaacaccattgaggtggcccgactggac
gggaccagccgcaaagtactagtcaacaacagcctggatgaacccagggccatcgctgtg
tttcccagcaaagggtacctgttctggacagactggggtcacattgctaagattgagcgg
gcacacctagacggatcagaccgtaaagttctgattaacacagacctgggctggcccaac
ggactcacactggactacgacacacgcaggatcttctgggtggatgctcacctggaccgc
attgagagttctgacctaaacggaaagctccggcaaatcctcatcagccctgtgtcccac
cccttcgccctcacacagttgaagccggtgtcctcccctctaacccctttctcccgactc
tcgcagcaagaccgttggatctactggacggactggcagactaagtccattcagcgtgtg
gacaaacacactggccgcagcaaggagacggtcctggccaacgtggagggcctcatggac
atcatcatagtctcgccacagaggcagagcggcactaaccactgtggggtgaataatgga
ggatgtactcatctctgcttcgctaatacaaacagctttgtctgtgcctgccctgatgaa
ccagacagcaggccatgctccacaatctcaggttatgtgccaacctcaccagacagagag
accaccagcaccccagcccctaacaagatccccaaagcccccacagacacgcctcagcaa
ggacccccactgattaactgcacagacaagagcctgagtgtggagggctgcttagagagc
aacgtggtgacggctcctcacggggaggggcttcatatcagctatgtgattggaggagcg
ttgaccattctggccatcctgataatcatcactgccttcattatttacagacacaaaaag
tccaagtttgctgaccccggggtgagcaacctgacctacagtaacccctcatataggacg
tcaacgcaagaggtcaagattgagacctctcaaaagccgcccatttacaaccagctacgg
tataagaaagaggggggcggggacagtggctacaccaaggagaagattcgcatcgtggaa
ggagtgtgtctcctctccagcgaggagctgtactgggaggacctgaagcagctgaagccg
tcacgtggtggtctgcacacatgcatgcgcacggacactgtgtccctgcaggccagcagc
gcctcgctggacgacggcgagacagagcagttgctccaagaggagacgtcagagtgttcg
tccataaacacgctgacccccgtcaccgtcacaccccaacgccacccccaacacagcctg
cccgacaccggctggacccccgcgcgcaaaccctccaccgagagcgaggtgtaa
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integrated database retrieval system
