KEGG   Oncorhynchus nerka (sockeye salmon): 115112043
Entry
115112043         CDS       T07952                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1-like isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
one  Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:one00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:one04812]
    115112043
Cytoskeleton proteins [BR:one04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     115112043
SSDB
Motif
Pfam: WD40 Katanin_con80 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_EML WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_WDR19_1st eIF2A Beta-prop_RIG_1st WDR54 Beta-prop_DCAF12 Beta-prop_VPS8 Beta-prop_WDR35_TULP_N PROPPIN WD_LRWD1 Beta-prop_LRRK2 Beta-prop_NUP159_NUP214 Beta-prop_IP5PC_F RMC1_N Beta-prop_IFT122_2nd Ge1_WD40 Beta-prop_WDR11_1st Cytochrom_D1
Other DBs
NCBI-GeneID: 115112043
NCBI-ProteinID: XP_029494569
LinkDB
Position
LG27:complement(43201337..43211721)
AA seq 707 aa
MAVANTTKTSWRLQEIVAHSSNVVCLALGKNSGRLLATGGEDCRVNIWAVSKPNCIMSLT
GHNNPVECVKFNNSEEQVVAGSQSGSLRVWDLEAAKILRTLMGHKANICSLDFHPFGEYL
ASGSMDTNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTIKLWDLTAGK
MITEFTAHTGAINIIQFHPNEYLLASGSSDRTIKLWDLEKFKMIGSSEGEMGPVRCLAFN
LDGCCLYSGAVDSLRVYGWEPNRCFDVVPVGWGKVADLAICNHQLIGVSYNLTNVSSYVV
DLTRVKKSGSVIQGVIQDDQPLTEPSPKGSTLRRNYDRPLTTCSTQRVKQSSESDRRSPE
GERRSPSSEDEKESSAEIRNPEDYKEIFQPKSAISRTPPKSEPFPAPLEDESFVVRANQG
LVEFMTPMTDRQQYVCVSLQPGLLLNLPVASSTPVLRVEPTMVATAPRPIPVVTTRPPTS
NHPPAPHPAPPLVVAMAKAKPQPSVILSTRNEPIGLNVGDFLPPARNNRPSVLGDDEALA
QIRKGHDTMCVMLTSRHKNLDTIRAVWGSGDVKTSLDSAVSMKDLSIVVDILNIVNLKPS
LWKLDLCTSILPQIEELLQSKYESYVQTGCTSLKLILKRFWPLISDTLTAPPSVGVDITR
EERHQKCKACYKQLKNLSNVVKNKADQVGRHGSAFKELQLLLAPLDY
NT seq 2124 nt   +upstreamnt  +downstreamnt
atggctgtggccaacaccaccaaaacatcatggcgattacaggagattgtagcccactcc
agtaatgtggtgtgtctggcactggggaagaactcaggccgcctgctagccactggggga
gaggactgccgagtcaacatctgggcagtcagcaaacccaactgcatcatgagtctgaca
ggacataataacccagtggagtgtgtaaagtttaataactctgaggagcaggtggtggct
ggctcacagtccggatcactgcgcgtatgggacctggaggctgcaaagatcctaagaact
ctaatgggacacaaggccaatatctgcagcttggacttccacccatttggggaatacctg
gcatctggttccatggacaccaacatcaagctgtgggatgtacggagaaagggctgtgtg
ttcaggtacaagggtcacactcaggcagtgaggtgcctggccttcagtccagatgggaaa
tggttggcctctgctagtgatgacagcaccatcaagctgtgggacctgactgcagggaag
atgatcacagagtttacagcacacaccggagccatcaacatcatccagttccaccccaac
gagtatctgctagcgtcaggcagctctgaccggaccatcaaactgtgggatctggaaaag
ttcaagatgattggctcttcagagggagagatgggaccagtcaggtgtctggcctttaac
ctggatggctgctgtctgtatagtggagctgtggactctctccgtgtgtatggctgggag
cccaaccgctgctttgatgtggtgccagtgggctggggcaaggtggcagacctggctatc
tgcaaccaccagctgattggcgtgtcgtacaatctgactaatgtttcgtcctacgtggtg
gatttgacacgggtgaagaagtctggctctgtgatccaaggcgtaatccaggacgaccag
ccactcacagagccctccccgaaaggatccacgctgcgacgcaactacgaccgacccctg
accacctgcagcacacagagggtaaagcagagttctgagtcagaccgccgcagcccagag
ggggagaggaggagccccagtagcgaggacgagaaggagtcctccgccgagatccgtaac
cccgaggactacaaagagatcttccagccaaagagcgccatctctcgcacccccccaaag
agtgagcccttccctgcccccttggaagatgagagttttgtggtgagggctaaccagggg
ctggtggagttcatgactcctatgactgacagacagcagtatgtgtgtgtctcactgcag
cccggcctgttgttaaaccttcctgtggcatcgtccactccggtcctgagggtggagcct
accatggtcgccacggcgccccgtcccatccccgtggtaaccacacgacctccgacctct
aaccacccccccgcaccccacccagcccccccactggtcgttgctatggcgaaggccaaa
ccccagcccagcgtcatcctctccaccaggaatgaaccaataggactcaacgtgggagat
ttcctgcctcctgctcgcaacaaccggcccagtgtgctgggtgatgacgaggctctggcc
cagatcagaaagggccatgacaccatgtgtgtgatgctcaccagccgacacaagaacctg
gacaccatcagagctgtgtggggcagcggggacgttaagacctccttggactcggccgtc
tcgatgaaggatctctctatcgtcgtggacatcctcaacatcgttaacctcaaaccgtct
ctatggaaactggacctgtgtacctctatactgccccagattgaagagctgctgcaaagc
aagtatgagagttacgtgcagacgggttgcacctctctgaagctgatcctgaagcgtttc
tggcctctcatctcagacacgctgacagcgcccccctctgttggagtggatataacacgg
gaggaacgccaccagaagtgcaaggcatgctacaagcagctgaagaacctcagcaacgtg
gtgaagaacaaggccgaccaggtgggacgccacggcagcgccttcaaagagctgcagctg
ctcctggccccactggactactga

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