Oncorhynchus nerka (sockeye salmon): 115112065
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Entry
115112065 CDS
T07952
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
one03037
]
115112065 (ift88)
Cilium and associated proteins [BR:
one03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
115112065 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_14
TPR_8
TPR_6
TPR_19
TPR_16
TPR_7
TPR_11
ANAPC3
ARM_TT21_5th
SNAP
TPR_9
TPR_10
TPR-S
TPR_CcmH_CycH
TPR_17
MIT
ARM_TT21_4th
TPR_15
ARM_TT21_N
RPN7
HAT_PRP39_C
Coatomer_E
ARM_TT21_2nd
SHPRH_helical-1st
ARM_TT21
DUF6584
ARM_TT21_C
SPO22
RNPP_C
Mfa1
Motif
Other DBs
NCBI-GeneID:
115112065
NCBI-ProteinID:
XP_029494653
LinkDB
All DBs
Position
LG3:51366624..51394630
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AA seq
876 aa
AA seq
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MEHVHLAAEEDDLYSGYNDYNPTFDSEELDNDAGFQQAVRTSHGRRPPMTAKFPGTAIGG
RALGTSFGSRMPMASSMGRPMTGAVQDGAARPMTAVRAAGYSSAMTRGSTFDPLGQSKGP
APPLEGKSEDTPDEKVKILEKKVNDLIEESCLAHGLGDLQLSLDRAKEAGRKERALVRQR
EQSGNADHINLDLTYSVLFNLATQYANNDMYAEALNTYQVIVKNKMFSNAGRLKVNMANI
HFKQKNYPKAIKLYRMALDQISNSHKEMRIKIMQNIGVVFIRMGQYSDAITSFEHIMSEC
PNIKTGFNLILCYYAIGDRERMKKAFQKLICVPLGIDEEDKYIPPNDDTHANLVIEAIKN
DKLHQMERERKALAEKFIMTSAKLIAPAIEATFAAGFDWCVDMVKSSQYVELANDLEINK
AITYLRQRDFNQVGAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDYDQADRYADLAMTA
DRYNPAALINKGNTVFVKKDYEKAAEFYKEALRNDSSCTEALYNLGLTYKRLGRLEESLD
CFLKLHAILRNSAQVMWQLANLFEMLEDPHQAIEWLMQLITVTPTDPQVLAKLGELYDSE
GDKSQAFQYYQESFRYFPSNIDVIEWLGAYYIDTQFCEKAIQYFERATLIQPTQVKWQLM
VASCYRRSGNYQKALETYKDIHRKFPENVECLRFLVRLCTDMGMKEVQDYATKLKKVEKM
KEIREQRVKSAREGSARGTRREGSASSVGTPNLVRTPPKAIVCTPDPVRHPPKKDSEVDI
KAVSHSEPKHSPLLAQGRDSGHSSHGTSAKGERLSAKMRALPGSNEPYEASSQRDIDASY
VDPLGAPMERPKTAAKKRNEEDEFADEELGDDLLPE
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggaacatgtacatcttgctgctgaggaggatgacctgtactctggctacaacgactac
aatccaacatttgattcagaggagcttgacaatgatgctggttttcagcaagcagtcagg
acaagccatgggagaaggccccccatgactgccaagtttcctggcactgccattggagga
cgggctttggggacctcttttggatctaggatgcccatggcctcatctatgggcagaccc
atgactggagctgtacaggatggagcagctaggcctatgactgcagtcagagcagcaggc
tactcttcagccatgaccagagggtctacatttgacccactgggtcagtccaaaggaccg
gctcctccattggagggcaaaagtgaagatacgccggatgagaaggtgaagatcctggag
aagaaggtgaacgacctgatagaagagagctgcctggcacatggccttggagacctacag
ttgtcccttgatagagccaaagaggcagggcggaaggagagagcgctggtgagacagagg
gagcagtcgggcaatgcagaccacatcaacctggacctcacatactctgtcttgtttaac
ttggcaactcagtacgccaacaatgacatgtacgcggaggctctgaacacttaccaggtc
atcgtaaagaacaagatgttcagtaatgcaggaaggttaaaagtgaacatggccaacatc
cacttcaagcagaaaaactaccccaaggccatcaagttgtaccgcatggccctggaccag
atctccaactcccacaaggagatgaggatcaagatcatgcagaacatcggtgtggtcttc
atccgcatgggccagtactctgacgccatcacctcctttgaacacatcatgagcgagtgc
cccaatattaagacaggctttaacctgatcctgtgttactacgccatcggagaccgagag
aggatgaagaaggcctttcagaagctcatctgtgttcctctggggatcgacgaggaggac
aagtacatcccacccaacgatgacacccatgccaacctggttattgaagccatcaagaac
gacaaacttcaccagatggagagagaacgtaaagccctggctgagaaattcatcatgaca
tcagccaaactcatcgccccagccatcgaggcgacgttcgccgccggatttgactggtgt
gtggacatggtgaagagttcccagtacgtagaactggccaacgacctagaaatcaacaaa
gccatcacctacctgagacagagggacttcaaccaggttggtgctgtggagactctgaag
acgtttgagaagaaagacagcagagtgaagagtgctgcagccactaacctctccttcctc
tacttcctggagaaagactatgaccaggctgaccgctatgccgacctggccatgacagct
gaccgctacaacccagcggcgctcatcaacaagggaaacacagtgtttgtgaagaaggac
tatgagaaggctgcagagttctacaaggaggctctccggaacgactcgtcctgcactgag
gccctatataatttaggtcttacctataagcgtctggggcgtctggaggagtctctggac
tgtttcctgaagctccacgccatcctgaggaacagcgcccaggtcatgtggcagctagcc
aacctctttgagatgttggaggatcctcaccaggccatagagtggttgatgcaactgatc
actgtgacgcccacagacccccaggtgttggccaaactgggagagctctacgacagtgag
ggagacaagtctcaggcgttccagtactaccaagagtccttcagatatttcccctccaac
attgacgttattgagtggctgggggcctactacattgacactcagttctgtgagaaggcc
atccagtactttgagagagccacactaatccagccaactcaggtgaaatggcagcttatg
gtggccagctgctacagaagaagtggaaactaccagaaagccctggagacttacaaagac
atccatcggaaattcccggaaaacgttgaatgcctgcgtttcctggtgaggctgtgcaca
gacatggggatgaaagaggtccaggactacgccaccaaactgaagaaggtggagaagatg
aaagagatcagagaacagcgggtgaagtcggcgagggagggcagcgctcgaggcacccgg
agagagggcagcgccagcagtgtgggcaccccaaaccttgtccgcaccccgcctaaggcc
atcgtctgcactccagaccctgttcgccacccgccaaagaaggacagcgaggtggatatc
aaagcagtctctcactctgagcctaaacacagtcctctgctggcccaggggagagacagt
ggacacagcagccatggcaccagcgccaagggggagaggctgagcgccaagatgagggca
ctgcctggctccaacgaaccctacgaggccagcagccagcgagacatagatgcctcctac
gtggatccactgggggctccgatggagagaccaaagactgcagctaagaagcgcaatgaa
gaggacgagtttgctgatgaagagctgggagatgacctactaccggagtag
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