Oncorhynchus nerka (sockeye salmon): 115112121
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Entry
115112121 CDS
T07952
Name
(RefSeq) vacuolar protein sorting-associated protein 35-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
115112121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115112121
Membrane trafficking [BR:
one04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
115112121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Motif
Other DBs
NCBI-GeneID:
115112121
NCBI-ProteinID:
XP_029494797
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Position
LG27:complement(47903271..47919071)
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AA seq
798 aa
AA seq
DB search
MPTTQQSPQDEQEKLLDEAVQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVR
SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDDGEQLEGEDAMTGDIND
SIDFVLLNFAEMNKLWVRMQHQGHSRDREKREKERQELRILVGTNLVRLSQLEGVNVDKY
KQIVLSGVLEQVVNCRDSLAQEYLMECIIQVFPDEFHLQTLNLFLRSCADLHQHVNVKNI
IIALIDRLALFAHREDGPGIPAEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLA
MKCYPDRVDYVDKVLESTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLQL
KHFPPLFEYFDYESRKSMSCYVLSNTLDYNTTIISQEQVDAILSLVSTLIQDQPDQPAED
PDPEDFAEEQSLVGRFIHLLLSDDPDQQYLILNTARKHFGAGGNQRIRYTLPPLVFAAYQ
LAFRYKENSSSDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFEN
HETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERTKCFSEENHEPLRTQCALAAS
KLLKKPDQCRAVSICAHLFWSGRNTEKNGEEILDGKRVMECLKKALKIANQCMDPSLQVQ
LFIEILNRYVCFYERENDAVTVQVLNQLIQKIREDLPNLEASEETEQINKHFHNTLEHLR
LQRESPEAEGPAYEGLVL
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccacacagcagtcaccccaggacgagcaggaaaagctacttgatgaagctgtg
caggctgtcaaggtccagtcatttcagatgaagcgttgcctggacaagaacaagctgatg
gatgcattgaaacatgcatctaacatgctgggcgaactcaggacctccatgttatcgcca
aagagctactacgaactctacatggccatctctgacgagctccactacctggaggtgtac
ctgacagatgagtttgccaaaggcaggaaggtggctgacctctatgagctggttcaatat
gcagggaacatcatccccagactttacctgctgatcactgtgggggtggtgtatgttcgc
tccttccctcagtcgcgtaaggacatcctgaaggacctggtggagatgtgtcgtggggtg
cagcacccgctgagaggcctgttcctcagaaactacctgctgcagtgcacccgcaacatc
ttgcctgacgacggggagcagctagagggggaggatgcgatgacgggagacattaacgac
tccattgactttgtgttgctgaattttgctgagatgaataagctgtgggtgcgcatgcag
caccagggccacagccgagacagggagaagagggagaaggagaggcaagagctgcgcatc
ctggtcgggaccaacctggttcgactcagccagctggagggggtcaacgtggacaagtat
aaacagattgtgctgtccggtgtcctagaacaggtggtaaactgcagagattccctggct
caagaatatctcatggagtgcatcattcaggttttccctgatgagttccaccttcagaca
ctgaacctattccttcgttcctgtgccgacctgcatcagcacgtcaatgtcaaaaacatc
atcatcgctctcattgacagactggctttgtttgctcaccgagaagatggacctggaatc
cctgctgaaatcaaactgtttgatattttctcccaacaagtagccacagttatacagtcc
cgccaggacatgccttcggaggatgtggtctcactacaggtgtccctcatcaacctggca
atgaagtgctaccctgaccgggtggactatgtggacaaggtgttggagagcacagtggag
atcttcaataagctcaacctggagcacattgcaaccagtagcgcggtctcgaaagagttg
actaggctgctgaagatcccagtggacacctacaacaacattctgaccgttctgcaactc
aagcacttcccaccactcttcgagtactttgattatgagtcccgcaaaagcatgagctgt
tacgttctgagcaacactctggactacaacaccaccattatatcccaggagcaggtggat
gccatcctgtccctggtgtcgacactgatccaggaccagccagaccagcccgctgaggac
ccagacccagaggactttgctgaggagcagagccttgtgggtcgcttcattcatctgctg
ctttccgatgaccccgaccaacagtatctgatcctgaatacagccaggaagcactttggt
gctggggggaaccagaggattcgctacactcttccaccgctggtgtttgctgcctatcag
ctggccttccgctacaaagaaaactcttcatcagatgataaatgggagaagaagtgccag
aagatcttctcatttgcccaccaaaccatcagtgctctgatcaaggctgagctggctgag
ctgcccctcagactcttcctacagggggcgctggccgcaggagagattggctttgagaac
cacgagactgtggcctacgagtttatgtcacaggccttctccctgtatgaggatgagatc
agcgactccaaggctcaactagcagctatcacgctgatcatcggcacgtttgagagaaca
aaatgcttcagcgaggagaaccacgagcctctgaggacacagtgtgcgctcgctgcctcc
aaactgctcaagaagccagaccagtgtcgtgccgtcagcatctgtgcacacctcttctgg
tccggacgcaacactgaaaagaatggagaggagattcttgacgggaagagggtgatggag
tgcttaaagaaggccctgaaaatcgccaaccagtgcatggacccgtcattgcaagtgcag
ctcttcattgagatcctgaacagatacgtctgtttctacgaaagagagaatgatgcggtg
acagtccaggttctgaaccagctgatccagaagatccgagaggacctgccaaacctggag
gccagcgaggagacggagcagatcaacaaacacttccacaacacactggagcacctgcgt
ctgcagagagagtcgccggaggccgagggacctgcttatgagggcctggtgctgtag
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