Oncorhynchus nerka (sockeye salmon): 115112181
Help
Entry
115112181 CDS
T07952
Name
(RefSeq) cartilage intermediate layer protein 1-like isoform X1
KO
K24436
cartilage intermediate layer protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
one04990
]
115112181
Domain-containing proteins not elsewhere classified [BR:
one04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
115112181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CILP_C
CILP_8th
CILP
CILP_5th
Mucin2_WxxW
Ig_3
I-set
TSP_1
Ig_2
CarboxypepD_reg
CarbopepD_reg_2
ig
TSP1_spondin
TSP1_CFP_C
V-set
GlgB_N
Motif
Other DBs
NCBI-GeneID:
115112181
NCBI-ProteinID:
XP_029494900
LinkDB
All DBs
Position
LG27:complement(50699175..50707192)
Genome browser
AA seq
1156 aa
AA seq
DB search
MCCLSTWALLLALGVTTTAQDNYEWTTWFNVDHPGGRGDYEQLDAIRFYYRARVCDAPRA
LEARTTDWIPARNTGEKTHADPTLGFWCANAEQAPGRNCSNYAVRFLCPKGQSGNTGSEG
IQDAWGPWSDWSHCSAKCGLVAMQVRSRKCQSQPKQLDEQCSGPTVEGRACKGPECSGTG
CTLHCEMGRVNAECDACMCQDHIVLGSVRSAGGLPAPGATILRFGPSSKLLTLTDHNGHF
RIPGICPDGNATLTVQLRNHAPHTVIVPHSTERTSVLSVMLNRAEKLHVVKNPENKARRE
GQTAALCCKVGGLPEPEDYQWFHNGSLLDRKQLNYDSTLVVRNLSMEQTGEYYCRASNQA
GAIKSKPAVVTVLGKDQPSCNPKPKSYLIRLPHDCHQNSSDSLYYDVGKCHSGTCAGQLD
NGIRCKDSVAYCCGVAKMEEKQLKCQGYELPTMVVTECGCQKCVETKVIVRGRAVAADTG
EPMRFGHVYINGARVSRTGYKGTFSIQVPHDTERLVMTFVDNMDKFINTTKVLPFNTKGG
TVYHEIKLLRKKEPVTIRSTELNTLQLGEVEGQDPIAEIQIPPNSFYKQSGEVFVGNVKA
SVTFLDARDVSTAAAAQSDLNFIGDEGDTLPLRTYGMFSVDFRDEEAGEPLNAGEVKVKM
DSTQVKMPEHLDTMKLWSLNPDTGMWEEEGSFQMEKKQRGKREERTFLIGNMEIRERRLF
NLDVPENRRCYIKVRSFRSDRFMPSEQVEGVVVTLINMEPTAGYSSNPRAWGRFDSVITG
SNGACLPAFCDDQKPDAYSAHVMANMGGEELEAVPSAPKFNPNIIGVPQPYLGKLNYRRS
DHNDPRLKKTAFSINVAKPSPNTAEELNGPVYSFDQLKECEEAPFTAGHFRFTRVEGDRY
DYNTVPFNEDDPMSWTEDYLSWWPKPMEYRACYVKVKINGPHEINMRSRNQGGTHPKTVG
QLYGLRDTRSIRDMDQSTVSAVCLEFKCSGMLYDQDRVDRTLVKVIPQGSCKRDNVNSML
QEYLVNHLPLAVNNDTNEFTMLAPLDPLGHNYGIYTVTDQDPRTAKEIALGRCFDGTSDG
TSRVMKSNEGVALTFTCGNREVTRQSVFQALQNSPGQSPARAVRDGRGRKQRAGANALRN
SRRRSTRNPTATRTSG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtgctgcctatcaacatgggctctcctcctagctctgggagtcaccactacggcacaa
gataactatgagtggaccacttggttcaacgtggaccaccctggaggtcgaggagactat
gagcagttggatgctatccgtttctactaccgtgcgcgggtgtgtgacgccccccgggcc
ctggaggctcgcaccacagactggatccccgctcgcaacacgggggagaagactcacgca
gaccctaccctgggcttctggtgcgccaacgctgagcaggcccctggtcgcaactgctcc
aactacgctgtgcgcttcctgtgccctaaaggtcagtctggcaacactgggtcagaaggc
atacaggatgcctggggtccttggtcagactggagtcattgctctgccaagtgtggtctg
gtggcaatgcaggtgcgctccaggaaatgccagtctcagcctaagcagttggatgagcag
tgcagcggacctacagtggagggtagagcctgcaaaggacctgaatgctctgggactggt
tgcacactgcactgtgagatgggtagggtgaatgcggagtgtgacgcctgcatgtgtcag
gaccacattgtactgggctctgtccgcagtgctggaggtctccctgccccaggggccacc
atcctccgcttcggccccagctccaaactcctcaccctcactgaccacaatggacacttt
cgcatcccagggatctgtcccgacggcaacgccacactgaccgtccagctgcggaatcac
gcccctcacactgtcatcgtgccccacagcaccgaacgcacctctgtcctcagtgtcatg
ctgaatagagcagagaagctccatgtggtgaagaaccctgagaacaaggccagaagagag
ggccagacagctgctctctgctgcaaagtgggtggattaccagagccagaagattaccag
tggtttcacaacggcagcctgctggacaggaagcagctgaactatgacagcacgctggtc
gtaagaaacctgagcatggagcagactggggagtactactgcagggccagcaaccaggct
ggggctatcaagtccaaaccagccgtagtcacagtcttaggtaaagatcaaccttcatgt
aacccaaaacccaaatcctaccttattcgcttacctcatgactgccatcaaaacagctcc
gactcactctattacgatgtaggaaagtgccactcagggacttgtgcaggacagctggac
aatggaatcaggtgcaaagactcagtggcatactgctgtggggtggcaaagatggaggag
aaacaactgaaatgccagggctatgagctccccaccatggtggtgaccgaatgtggctgc
cagaagtgtgtggagaccaaagtcattgtgcgtgggcgggctgtggccgcagacactggg
gagcccatgagatttggtcatgtctacatcaatggagccagagtcagccgcacaggctac
aaaggcaccttctccatccaggtcccccatgacactgagaggctggtgatgacctttgtg
gacaacatggataagttcatcaacacaaccaaggttcttccattcaacaccaaagggggc
accgtctaccatgagatcaagcttttgaggaagaaggaaccagtgaccatcagatcaaca
gagctcaacactcttcagctgggagaggtggagggccaggatcctattgctgagatccag
atcccacccaactccttctacaagcagagtggagaagtatttgtgggtaatgtgaaggct
agcgtcacttttctggatgctagagacgtatccacagcagcagccgcacagagtgacctc
aacttcataggagatgagggtgacaccttgcccctgagaacatacggtatgttctcagtt
gacttcagggacgaggaagccggagaaccactgaacgccggagaggtgaaggtgaaaatg
gattcaacacaggtgaaaatgcccgagcacctggacaccatgaagctgtggtccttgaac
cccgacacaggcatgtgggaggaggaggggagcttccagatggagaagaagcaacgtggt
aaaagggaagagaggaccttcctcattgggaacatggagatcagagagaggaggctgttt
aacctggacgtcccagaaaacaggaggtgttacatcaaggtgcgaagcttccgcagcgat
cgcttcatgcccagtgagcaggtagagggagtggtggtgaccctgatcaacatggagccc
actgcaggttactcctccaaccctcgtgcctggggacgctttgacagcgtcatcactggc
tccaatggtgcctgtctgcctgccttctgcgacgaccagaaacctgacgcatattctgcc
cacgtcatggccaacatgggaggagaagaactcgaggcagtcccatctgctcccaagttt
aaccccaacatcattggagtccctcagccatacctgggcaagctgaactacagacggtca
gaccacaatgaccccaggttaaagaagacagccttcagcatcaatgtggccaagcccagc
ccaaacacagctgaagagctcaacggacctgtgtactcatttgaccaactgaaagagtgt
gaggaagccccatttactgcaggccacttccgcttcaccagagtggagggagatcgctac
gactacaacacagtgcctttcaacgaagacgatcctatgagctggacagaagactacctg
agctggtggcccaagcccatggagtaccgagcctgctatgtcaaggtcaagatcaatggt
ccccatgagatcaacatgcgctcccgaaaccagggcggcactcaccccaagaccgttggc
caactgtatggcctccgcgacacccgcagcatccgcgacatggaccagtccaccgtctct
gctgtgtgtctggagttcaagtgcagcggcatgctctacgaccaggaccgagtggaccgc
actctggtgaaggtgatccctcagggcagctgtaagagggacaatgttaactccatgctt
caagagtacctggttaatcacctgcctctagccgtcaacaacgacaccaatgagttcaca
atgctggcaccactggaccctctgggccacaactatggcatctacacagtgacagaccag
gacccccgcactgccaaagagatagcactgggacgctgctttgatggcacctctgacggt
acttcccgtgtcatgaagagcaacgagggagtggcacttacctttacctgtggcaaccgt
gaggtgacccgtcaaagcgtgttccaggctctgcagaactcccccgggcagtccccggcg
agggcagtgagggatggccgaggcaggaagcagagagcaggagccaacgcacttcgcaac
agccgtagacgcagtactcggaatcccactgccacacgcacctcaggctaa
DBGET
integrated database retrieval system
