Oncorhynchus nerka (sockeye salmon): 115112224
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Entry
115112224 CDS
T07952
Symbol
kars
Name
(RefSeq) lysine--tRNA ligase isoform X1
KO
K04567
lysyl-tRNA synthetase, class II [EC:
6.1.1.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
115112224 (kars)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
one01007
]
115112224 (kars)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
one03016
]
115112224 (kars)
Enzymes [BR:
one01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
115112224 (kars)
Amino acid related enzymes [BR:
one01007
]
Aminoacyl-tRNA synthetase
Class II (A)
115112224 (kars)
Transfer RNA biogenesis [BR:
one03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
115112224 (kars)
Prokaryotic type
Other AARSs
115112224 (kars)
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Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_anti-codon
tRNA-synt_2d
Motif
Other DBs
NCBI-GeneID:
115112224
NCBI-ProteinID:
XP_029495000
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Position
LG27:53103991..53115450
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AA seq
610 aa
AA seq
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MLTLVVRTARHQVCQAFGVRAQGVKFALPSTVSVPALIQGTRWRGDKSELKRRMKAEKKA
SEKEAKVKEQVEQKQTNDQAVQNAYGGDEETLDPNQYFKIRTQAIQALKGTAEDPYPHKY
NVDLSLTGFIEKYNHLQPGDQLTDIVLNVSGRVHAKRESGAKLIFYDLRGEGVKLQVMAT
NRSYKSEEEFVRINNKLRRGDIIGVRGNPGKTKKGELSIIPIEMTLLSPCLHMLPHLHFG
LKDKETRFRQRYLDLILNDYVRQKFVTRAKIITYLRSFLDGLGFLEIETPMMNLIPGGAV
AKPFVTYHNDLDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCE
FYMAYADYHDLMDITEKLLSGMVKHITGEYKVKYHPEGPEGPTYEIDFTPPFRRVSMTHD
LEKEMGVKFPAADTYDSDETRKFFDELCAQKGVECPPPRTTARLLDKLVGDFLEVTCINP
TFICDHPQIMSPLAKWHRSEKGLTERFELFVLKKEICNAYTELNDPIRQRELFEQQAKAK
AEGDDESMSIDETFCTALEYGLPPTAGWGMGLDRLTMFLTDSNNIKEVLFFPAMKPDDNK
TAPLTEGTSV
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgctgactctggtggtcaggactgccaggcaccaggtgtgtcaagcctttggggtcagg
gctcagggggtaaagttcgctctccccagcacagtgtcagtcccagctctaattcagggg
actcgctggcgaggtgataaaagtgagctgaagaggcgaatgaaagctgagaagaaggca
tctgagaaggaagccaaagtcaaagagcaggttgagcagaagcagaccaatgaccaggca
gttcagaatgcatacgggggagatgaggagaccctggaccctaaccaatactttaagatc
cgcactcaagccatccaagctctgaagggcacagcagaggacccataccctcacaagtac
aatgtagatctgtcgctcacagggttcattgagaaatacaaccacctacagcctggagac
cagctaacagacattgtcctcaatgtatcaggtcgtgttcatgccaagagagagtccggg
gccaagttaatcttctatgacttgcgaggggaaggcgtcaagctgcaagttatggcaacc
aacaggagctacaagtctgaggaggagtttgtgcgcatcaacaacaagctgcggcgtggt
gacatcatcggtgttcgtggtaatccagggaagaccaaaaagggcgaactgagcatcatt
cccatagagatgaccctgctttcaccttgcttgcacatgctgccccacctgcactttggt
ctcaaggacaaggaaacacgatttcgccagcgatacctggatctgattctcaatgactat
gtgaggcagaagtttgtaacacgtgccaagatcatcacttacctccgcagcttcctggat
gggctgggattcctggagattgagacgcccatgatgaacctgattcctggtggggccgtg
gccaaaccctttgtgacctaccataacgacctagacatgaacctttacatgaggatcgct
cctgagctctaccacaagatgcttgtggttggggggattgacagagtgtatgagattgga
cggcagttcagaaacgaaggcattgacctcacccacaatccagagttcaccacctgcgaa
ttctatatggcctatgcagattaccatgacttgatggatatcacagagaagcttctctcg
gggatggtcaagcacatcactggagagtacaaagtgaagtatcatccagagggtccagag
ggcccgacctatgagatcgacttcactcctcccttcaggagggtcagcatgacgcacgac
ctggagaaggagatgggcgtcaagttcccagctgctgacacctacgacagtgacgagaca
cgtaaattctttgatgagctgtgtgcccagaaaggagtggagtgccctcctcctagaacc
actgcccgcctccttgacaagttggtgggagatttcctggaagtcacgtgtatcaacccc
acgttcatctgtgaccacccacagatcatgagccccctggccaaatggcaccggtcagag
aaaggcctgacggagcgttttgagctgtttgtattgaagaaggagatttgtaatgcctac
actgagttgaacgaccctatcagacagagggagctctttgagcaacaggctaaggccaag
gcagagggtgatgacgagagcatgtccattgatgagactttctgcacggcactagagtat
ggcctgccaccaactgctggctggggcatgggccttgaccgtcttaccatgttcctcaca
gactctaacaacatcaaggaggtgctgttcttcccagccatgaagcctgatgacaacaag
acagcccctctcacagagggcacctctgtgtag
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