Oncorhynchus nerka (sockeye salmon): 115112297
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Entry
115112297 CDS
T07952
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115112297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115112297
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
115112297
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
115112297
NCBI-ProteinID:
XP_029495124
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Position
LG27:complement(55613116..55618070)
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AA seq
230 aa
AA seq
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MSSVPAPNRSSAGWPRGVSQFGGNKYMSAPAKPLSLERTINLYPLTNYTFGTKEPLYEKD
SSVAARFQRMREEFDKLGMRRAVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELCPGEDE
VDGLKRLMTEILGRQDGVKQDWVIDDSIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLV
QLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtgtgcctgctccgaatcgctcatccgccggctggccgcgcggggtcagtcag
ttcggcgggaacaaatacatgagcgcgcctgcaaaaccactcagcctggagagaaccatt
aatttataccctctcaccaactacacatttgggaccaaggagcctctgtatgagaaggac
agttcagtggcagcacggttccagaggatgagggaggagtttgacaagctgggcatgcgg
agggcagtggagggagtgcttattgtccatgaacacaggttgccccatgtactgctgttg
cagctgggaaccaccttcttcaaactgccaggtggagagctgtgtccgggggaggatgag
gtggatggactgaaacgcctgatgacagagatcctgggccggcaggacggggtgaagcag
gattgggtgatcgatgactccatcggaaactggtggcgccccaactttgaacccccacag
tatccctacattccagcccacatcactaaacccaaggagcataaaaaactcttcctggtt
caactgcaggaaaaagctctgtttgcagtcccaaagaactacaaactggtggcagcccct
ctgtttgagctttatgacaacgcccccggctatgggccaatcatatccagcctaccgcaa
ctactaagcaggttcaactttatctacaactaa
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