KEGG   Oncorhynchus nerka (sockeye salmon): 115112297
Entry
115112297         CDS       T07952                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5-like
  KO
K14397  cleavage and polyadenylation specificity factor subunit 5
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    115112297
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:one03019]
    115112297
Messenger RNA biogenesis [BR:one03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor Im (CFIm)
     115112297
SSDB
Motif
Pfam: NUDIX_2
Other DBs
NCBI-GeneID: 115112297
NCBI-ProteinID: XP_029495124
LinkDB
Position
LG27:complement(55613116..55618070)
AA seq 230 aa
MSSVPAPNRSSAGWPRGVSQFGGNKYMSAPAKPLSLERTINLYPLTNYTFGTKEPLYEKD
SSVAARFQRMREEFDKLGMRRAVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELCPGEDE
VDGLKRLMTEILGRQDGVKQDWVIDDSIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLV
QLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIISSLPQLLSRFNFIYN
NT seq 693 nt   +upstreamnt  +downstreamnt
atgtcgagtgtgcctgctccgaatcgctcatccgccggctggccgcgcggggtcagtcag
ttcggcgggaacaaatacatgagcgcgcctgcaaaaccactcagcctggagagaaccatt
aatttataccctctcaccaactacacatttgggaccaaggagcctctgtatgagaaggac
agttcagtggcagcacggttccagaggatgagggaggagtttgacaagctgggcatgcgg
agggcagtggagggagtgcttattgtccatgaacacaggttgccccatgtactgctgttg
cagctgggaaccaccttcttcaaactgccaggtggagagctgtgtccgggggaggatgag
gtggatggactgaaacgcctgatgacagagatcctgggccggcaggacggggtgaagcag
gattgggtgatcgatgactccatcggaaactggtggcgccccaactttgaacccccacag
tatccctacattccagcccacatcactaaacccaaggagcataaaaaactcttcctggtt
caactgcaggaaaaagctctgtttgcagtcccaaagaactacaaactggtggcagcccct
ctgtttgagctttatgacaacgcccccggctatgggccaatcatatccagcctaccgcaa
ctactaagcaggttcaactttatctacaactaa

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