Oncorhynchus nerka (sockeye salmon): 115112302
Help
Entry
115112302 CDS
T07952
Name
(RefSeq) transcriptional repressor CTCF-like isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115112302
03036 Chromosome and associated proteins [BR:
one03036
]
115112302
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115112302
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
115112302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
Zf-C2H2_ZNF451_C
zf-C2H2_REST
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451
zf-met
LIM
zf-C2HE
zf-C2H2_15
zf-C2H2_ZN142
DUF7128
Motif
Other DBs
NCBI-GeneID:
115112302
NCBI-ProteinID:
XP_029495134
LinkDB
All DBs
Position
LG27:complement(55636154..56074040)
Genome browser
AA seq
778 aa
AA seq
DB search
MRVNWVVSMEGEVVSIETAQVEGLQDSGEGAELLQTAEASLMEGGVAPQEVMGNVEMMVM
NTLDSTLDPALLQMKTEVLEGGGTVTVTGGDEGQIITLQVSVVNMEGNMDQTSAALGLGQ
LQLVQVPVTTATVEELQASFVDASAGNTEAEPVICHTLPLPEGFQVVKVGANGEVETVEQ
EELQAAQDELQVIHGEEEEEAEPQVEDQTWSKDPDYQPTAGIRKGKKGKKSRLRYGEGER
DMDVSVYDFEEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRS
NLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQDCDMAFVTSGELVR
HRRYKHTFEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMR
THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ
HSFMEMGRKCRYCDAMFHERYALIQHQKSHKNEKRFKCDQCDYCCRQERHMIMHRRTHTG
EKPYACSQCEKTFRQKQLLDMHFKRYHDPNFIPTAFVCSKCGKTFTRRNTMLRHAENCNG
ENTGDENGTLPKKGRRGRKRKMRSRRDDDDDDTEPELDDIEEEEEEELLAEIEVEQAPPV
VPVPAPVGPPAKRKRGRPPKAKPAPTAAIIRVEDETTGEVDDIIVKKEMKAERASQEEEA
VEDEEPAVEVEHAKGEPANQVEESLQGEEVVQEMALSVTEGPPNGDLTPEMILSMMDR
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgagggtgaactgggtcgtttctatggagggtgaagtcgtttccattgagaccgctcag
gtcgagggtctccaggacagtggggagggagcagagctgctccagactgcagaggcttcc
ctgatggaggggggtgtggcaccccaagaggtgatggggaatgttgaaatgatggtgatg
aacaccctggactcgacccttgaccctgccctgctacagatgaagactgaggtccttgaa
gggggcggaacagtgacggtcaccgggggagacgagggacagatcatcaccctgcaggtt
agtgtggtgaacatggaggggaacatggatcagacgagtgcagcgctggggcttggacag
ctgcagctggtgcaggtccctgtcactacagccaccgtggaagagctccaggccagcttc
gttgacgcctcagcaggcaatactgaggcagagccagtgatctgccacaccctccctctg
cccgagggcttccaggtggtgaaggtgggggcgaatggagaggtggagacagttgagcag
gaagaactgcaggcagcccaggatgagctccaggtgatccatggggaggaggaggaggaa
gctgagccccaagtagaggaccagacatggtcaaaagacccagattaccaaccaactgct
ggcatccgcaaggggaagaagggcaagaagagccgcctgcgttacggggagggggagcga
gacatggacgtgtctgtatacgactttgaggaggaacagcaggaggggatgctctctgag
gtcaacgctgagaaggttgtgggcaacatgaagccacccaaacccactaagataaaaaag
aaaggtgtgaagaagacgttccagtgtgagctgtgtagctacacctgcccccggcgctct
aacctggaccgccacatgaagagccacacagatgagaggccacacaaatgccatctgtgt
gggagggccttcagaacggtcacactgctgaggaaccacctcaacacacacacaggcact
cgtcctcataaatgccaagattgtgacatggcatttgtgaccagtggagagctggtgcgt
catcgtcgctacaaacacacattcgagaaacccttcaagtgctccatgtgtgactacgct
agtgtggaggtgagtaagctgaagagacacatccgctcccatacaggcgagaggcccttc
cagtgcagtctgtgcagctacgccagccgagatacctacaaactgaagagacacatgagg
acacactcaggtgagaagccatatgagtgctacatctgccatgctcgtttcacgcagagc
ggcaccatgaagatgcacatcctgcagaagcacacagagaatgtggccaaattccactgc
ccccactgtgacacagtcatcgcccgcaagagcgacctgggtgtgcacttgcggaagcag
cattcgttcatggagatgggcaggaagtgtcgttactgtgacgctatgttccacgagcgt
tacgcactcatccagcaccagaaatcccacaagaacgagaagcgcttcaagtgcgaccag
tgtgactattgctgcagacaggagcgtcacatgatcatgcacagacgcacacacacaggg
gagaagccatacgcctgcagccaatgtgagaaaactttccggcagaagcagctgctggac
atgcatttcaaacgttaccatgatcccaacttcatccccactgccttcgtctgcagcaag
tgtggcaagacctttactcgcaggaacaccatgctgcgtcacgcagagaactgtaacgga
gagaacactggcgatgagaacggaaccctgcccaagaaaggccgccgcggcaggaagagg
aagatgcgctccagacgggatgacgacgatgacgacaccgagcctgagctggatgacatt
gaggaagaggaggaggaggagctgctagctgagattgaggtggagcaggcaccaccggtt
gtccctgtccctgcccctgttggcccaccagccaagaggaaacgtggaagacctcccaag
gccaaacctgccccaacggcggcaatcatccgggtggaggatgagaccacaggcgaggtg
gatgacatcatcgtgaagaaagagatgaaagctgagcgggcgagccaggaggaagaagct
gtcgaggatgaggaaccagcagtagaggtggagcatgccaaaggagaacctgccaatcag
gtagaagagtcactccagggggaggaggtggtgcaggaaatggcactgtctgtcacagag
ggtccccccaacggtgacctcactcctgaaatgattctcagtatgatggaccggtga
DBGET
integrated database retrieval system
