Oncorhynchus nerka (sockeye salmon): 115112323
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Entry
115112323 CDS
T07952
Symbol
rnf17
Name
(RefSeq) RING finger protein 17 isoform X1
KO
K18405
tudor domain-containing protein 1/4/6/7
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115112323 (rnf17)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115112323 (rnf17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Agenet
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
115112323
NCBI-ProteinID:
XP_029495184
LinkDB
All DBs
Position
LG3:complement(52076389..52112151)
Genome browser
AA seq
1656 aa
AA seq
DB search
MSDRTPRADNPNSVVCNICGIAYTLPEDEIVGNLPNVLLCSHIFCTTCLRSLEFNNVILC
PECKVESTLPEGGVEGLQVDSRIIGLIYTAKMNKMKRDRPRHHRVKSSSSPLEEDTKQGP
DVEKALKAVEEALSQASENMANLDNIHQTLVKGLMVQVKREKARLLMEIDEAMDRAFTIL
NRRKGALVAELTNMEQHFPSSRRELGRVEERMRALDTAMQKAKQVGQHPSLESYCDLEQL
LETLQASVDVQSFDLKCLSLGSGLSCIAQQDALGRSLKACLKINIGNAKILTDELIHRDR
ERPQEQAGPNRKAPLLPHSLSTREPSRPQQQQQQVSQTMMRPPPSSTREHVPPHQEQESL
RMTRHTWGPSRPLPSSSPVSDSGPNVIIEEIIEENEQGGEGKDEVSLKSCHQVTTASSKT
TAAGFSVGVVPAHLSELQQASERQRAQRSSKKSQEDLSPVSQGKVFQEWVMVTHVVNPNH
FYIRHVAEQRACILLSKKINSLCSGERGLFTASDILETGSTVFVKWKEGMWCRATLTELF
QRGHLDPVRSCPVPELHRVRVYFQDYGFCKGIALQSEEVGPDLFIRDMNERLRRVDVAGQ
SEMSRWLPQAIKCSLKDIVPADLTKGWSAEAQDEFRRVVGSASVEMQVFGQERGALLVDL
KKAPMDSGSSNMPMSLREYLVFLELARFYSPVAWNAKTVPCGRRPLQFYLPVFPRTNIEL
NAVVSHIDTPSHFYIQLVDNMEFLLLTAKLQECYSYDCPSRGTRGEDQDLEVYCPVLDQA
CVARFDDKVWYRAHVIGIPGGRKVEVQFVDFGNNKILSVNDLRKIKDEFFALPAMAIQCY
LADVIPLEEGETWSKACIEKFKSLADQRLVTAVATEAGRRGRGLPVRLFETSDSSEPLAN
IEDLLVKDQLACFKKGIKSKDTQAPVVDTTVWDPPLEGLLGESEPAPTSLGQETPEQDQE
IQPYLMLPANLKDLRVRLTHVVSPGSFYVQLLQMDTQLKRVYELLKQEYALTEPQEIEWK
ADMYCAAYNNGVWERGQLCSPVSLGFIAEVVRCDFGNKVKLHVNNLRPLLPSLVGCLVLE
CSLSEIRPAGGRSTWTATACDFISYYLTGAMAIMTIKENTEQRPVPVSLYCSNRAGQDVS
IADFLVSEGLALKERKPQVSPMPKLEELSDSDSKFKGLQNRTPNTENQPPTPPADWSVSP
RPVSTAPMPPKPAPRTNPFPEKVKTQAYCPPELPHCGRTLMTISAIGEDGLIYAMTHHAG
RQFEQLRERLQQHIKTLPRLKPYTWKSVLGCAVMGSDMLWYRGEVLEVIGGHVKVRYVDQ
GLVENIPVCHVYPTVLCEDIPQLCMPCQLHGVIPVGRTWQWDAVALLKELLLNRCVDMQI
MELPEDPLGCLTVQISLDGMTLSRIMVHHQHASVDQAIASTQELVVSSHLDLDDWDIDTE
GLEDPEPVPRVFSYPNLPEKGERFRVRIKHLRTPNEVFLYPLDGSSCVESGGESLEEALK
RVHDRIDRLAMLSDFAIEAPCLAEYSDGKYYRAKLLGFAGLNPVKILVRHVDFGSDDTLP
THKLRQIPAHLLRFPCKAIKVRVAGFRPPRHNLEKERLSYRPEWSLKAALEMIDLLHSCC
TASVTATEPELSVFLYDEDGALVYLPLVEKGLADFD
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagaacgcctcgagccgacaacccgaactctgtggtttgtaacatatgcggt
attgcttacactttaccagaggacgaaatcgttggcaaccttcccaatgtcctcctatgt
tcccacatcttctgcactacctgtctgcgctcgctggagtttaacaatgtcattctgtgc
cctgaatgcaaggttgagtccactcttcctgaaggaggggtggagggactgcaggtggac
agcagaatcattggcctcatctacacagccaaaatgaacaaaatgaaaagagacagaccg
aggcatcacagagtcaaatcctcgtcttcacctctcgaggaggacacaaaacagggtcca
gatgtagagaaagcactgaaagcagtagaagaggctctgtctcaggcctctgagaacatg
gccaatctggacaacatccatcagactctggtgaaaggcttgatggtgcaggtgaagaga
gagaaggccagactgctgatggagatagatgaggctatggacagggccttcaccatcctc
aatagaaggaagggggcactggtggctgagctgaccaacatggagcagcacttcccgtcc
agcaggagggaactgggccgggtggaggagaggatgagggccctggacacagccatgcag
aaggccaagcaggtcggacagcacccctccctggagagctactgtgacctggagcagttg
ttggagaccctgcaggcttctgtggatgtacagtcgtttgacctgaagtgtctgtctctg
ggctctggactgagctgcatagcacagcaggatgcgctgggcaggagtctgaaggcgtgt
ctgaagatcaacattgggaatgccaagattctgacagatgagctgatccacagagacaga
gagaggccccaggagcaggctgggcccaataggaaggcccccctgctcccacactccctt
agcaccagagagcccagccgcccccagcagcagcagcagcaggtgagccaaacgatgatg
aggcctcccccgtccagcaccagagagcatgttccacctcaccaggagcaggaaagcctg
aggatgactaggcatacctggggcccctctcggcccttacccagctccagccctgtctca
gactccggacccaacgtcatcatagaggagattatagaggagaatgaacaaggaggagaa
gggaaggacgaagtcagtttgaaatcctgccatcaagtcaccacagcctcatccaaaacc
actgcagcagggttctcagttggagttgtcccagctcacctgtctgagctgcagcaggcc
agtgagagacagagagcccagaggagcagcaagaagagccaggaggacctctcacctgtc
agtcaggggaaagtgttccaggagtgggtgatggtgacccatgtggtgaaccctaaccac
ttctacatccgccacgtggcagagcagagggcctgtattctgctgtccaagaagatcaac
tccctctgctctggagagagaggactgttcacagccagcgacatactggagactggctcc
acagtgtttgtgaagtggaaggaggggatgtggtgtcgggccaccctgacagaactgttc
cagagaggtcacctggacccggtccgcagctgtcctgttcctgaacttcaccgtgtcaga
gtctacttccaagactatggtttctgcaagggaatagccctgcagagtgaggaggtgggt
ccagacctgttcatcagggacatgaatgagcgtctgagaagagtggacgtggccggccaa
tcagaaatgagccgctggctccctcaggctatcaagtgttccctcaaggacattgtgcct
gcagacctgactaaaggctggagtgcggaggcccaggatgagtttcgccgcgtggtgggc
tcagcctcagtagagatgcaggtgtttggtcaggagagaggtgctctgctggtggacctg
aagaaagcccccatggacagcggttccagcaacatgcccatgtccctccgagagtacctg
gtcttcctcgagctcgccaggttttactctcccgtggcgtggaatgccaagactgtgcca
tgtggcaggaggcctctccagttctaccttcctgtcttccctcgtaccaatatagagctc
aacgctgtggtgtcccacatagacacaccctcacacttctacatccaactggttgacaac
atggagttcctgctgctgacagccaagctgcaggagtgttacagctatgactgccccagc
agggggaccagaggagaggaccaggacttggaggtctactgtcctgtcctggatcaggcc
tgtgtggcacgatttgacgacaaggtctggtacagggcccatgtcatcggtattcccggg
ggcaggaaggtggaagtccagtttgtagactttggcaacaacaagattctgtcagtcaac
gacctgaggaagatcaaggatgagttctttgccctcccagccatggccatccagtgctac
ctggctgatgtgattcctttggaagagggtgagacgtggagcaaagcgtgtatagagaag
ttcaagagtcttgctgaccagagacttgtgaccgctgtggccacagaggctggtcgaagg
ggcaggggtctgccagtcaggctgtttgagaccagtgattccagcgagccgttagcaaac
attgaagatctgctggtcaaagatcaactggcctgcttcaagaagggcatcaaatctaag
gacacccaggccccggtggtagacaccacagtgtgggaccccccactcgagggtcttctg
ggtgagtctgagccagcccctacctccctgggccaggagaccccagagcaggaccaagag
atccagccctacctgatgctgccggccaacctgaaagacctgagggtcaggttgacccac
gtggtctcacccggaagcttttacgtccagcttctacagatggacacccagctcaagagg
gtgtatgagttgttgaagcaggagtatgcccttacagagccccaggagatagagtggaag
gcagacatgtactgtgctgcctacaataacggggtctgggagaggggccagctctgctct
cctgtttccctcggcttcattgccgaggtagtacgctgtgattttggcaacaaggtgaaa
ctccatgtgaacaacctgagaccactgctgcccagtctggttggctgtctggtgctggag
tgttcgctcagcgaaatcagacctgcaggcggtcgttccacctggacagccacggcgtgt
gacttcatctcctactacctgacaggagccatggccatcatgaccatcaaggagaacaca
gagcagcgtccggtgccggtctctctgtactgctccaaccgggccgggcaagacgtcagc
atcgcagacttcctggttagtgagggcctcgctctgaaagagaggaagccacaagtgtcc
cccatgcctaaactagaggagttatcagactctgactccaagttcaagggccttcaaaac
aggacacctaacacagaaaaccagccccccaccccccccgctgactggtcagtctctccc
cgacccgtctccactgcccctatgccgcccaaaccggccccccgtactaaccccttccca
gagaaggtgaagacacaggcctactgcccccctgagctgccccactgtggacgcactctg
atgaccatctctgccatcggagaggatggcctcatctacgccatgacgcaccacgcaggg
cgtcagtttgagcagctgcgggagcgtctacagcagcacataaagacccttcccaggctg
aagccctacacctggaagagtgtcctgggttgtgctgtcatgggctctgacatgctctgg
tacagaggagaggtgctggaggtcattggaggtcacgttaaggtgcgctacgtggaccag
ggtctagtggagaacatccccgtgtgtcacgtctaccccacagtgttgtgtgaggatatt
ccccagctctgtatgccctgccagctgcacggagtcatccctgtgggcaggacgtggcag
tgggatgctgtggctctgctgaaagagctgctgctaaaccgctgtgtggacatgcagatt
atggaactgcctgaggatcctctgggctgtctgacagtacagatttctctggatggcatg
actctaagcagaatcatggttcaccaccaacacgcctctgtagaccaggctattgcatcc
acgcaggagctggtggtgtcatctcacctagatctagatgactgggacattgacacagag
ggtttggaggacccagagccagtaccgagggtgttctcatacccaaacctgcctgagaaa
ggcgaacgcttccgggtcaggatcaaacacctccggacccccaacgaggtgttcctgtat
cccttagatggcagtagttgtgtggagtctggtggggagagtctggaggaagcactgaag
agagtccatgacaggattgaccgtctggccatgctctcggacttcgccattgaggccccg
tgtctggcagaatacagtgatgggaagtactaccgggccaagctgctgggcttcgctggc
ctcaaccctgttaagatcttggtcagacacgtggactttggctctgacgacacccttccc
acacacaagctgcgtcagatcccggcccatctcctgcggtttccctgtaaggccatcaag
gtgcgggtggcgggcttcagaccaccccgccacaacctggagaaggagcgcctgtcctac
cggccagagtggagcctgaaggctgccctggagatgattgacctgctgcacagctgctgc
accgcatccgttaccgccactgaaccagagctgtctgtgttcctgtatgacgaggatgga
gctctggtctacctgcctctggtggagaaaggactggctgactttgactaa
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