Oncorhynchus nerka (sockeye salmon): 115112472
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Entry
115112472 CDS
T07952
Name
(RefSeq) leucine-rich repeat-containing protein 49-like isoform X1
KO
K16606
leucine-rich repeat-containing protein 49
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
one03037
]
115112472
04812 Cytoskeleton proteins [BR:
one04812
]
115112472
Cilium and associated proteins [BR:
one03037
]
Primary cilia and associated proteins
Tubulin polyglutamylase and associated proteins
115112472
Cytoskeleton proteins [BR:
one04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Tubulin modification proteins
Tubulin polyglutamylase complex components
115112472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_9
LRR_4
LRR_8
LRR_14
LRR_LRWD1
LRR_NXF1-5
LRR_R13L1-DRL21
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
115112472
NCBI-ProteinID:
XP_029495418
LinkDB
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Position
LG27:61542748..61605657
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AA seq
843 aa
AA seq
DB search
MRPQRQQTNNNTAITGRCLSPTVNSYKLHFTAVNSQIPERNVQRPLDVRWSKDFTNGINM
DTMKMNPPRQDSRLNADSGGGRPLHTPVLAFVSEFMGPERPLLPPAAALPSGLTGDLGPQ
PHRVKPRRATNSAGAINSHSTSPLTLPTGPGDAISLSENSPSSFPIAFRSRDDCALSPER
LDLDRRGLEECPLLEGMGRLRLLNFQHNLITHIHNLSHLRHLAFLDLYDNHISQMSGISA
LASLRVLMLGKNRIQRICSLDNLTKLDVLDLHGNQISQIENLSHLSELRVLNLAGNCISR
VDNLQGLDSLTEINLRRNCISTVTEVDQLPCLQRLFLSCNSITSFDELACLGESCSLYEL
TLDGNPVALETWYKQAALRCVLQLRQLDMKRVTEEERRMACVTARKEDEKKRESHKQAMH
KSPAHVVPQQFYTQLGLKSQDSSVTSKEKRRLAIRNAALQWEGVRACLELPAQNGAKEEI
SPEASPAHSPAQTNGLALEPSPDEQLRRVSPVSALDRPTGGSETRIRSTSRPNSPRDPKL
LEAGGVNLQSLSLSDSHLAELDGETLRLFGLGALEALERGWGVQTAGAVTVIAFRYIHFD
AIVPTLPRIRVKFPNLSHLIFLETNVSRLPQLAALAQVRRLDQLTIHPEGNPVVSLSLWR
SFLIYRLHHFNLHKINNLEVTMNDMISAERLFGTLGHIAATETPRCRLLVLLEESRKRQL
QFLLEGRGRRAGLSPEELRDNGKLLGEGLSRALFNYPSRDCCSVGAESPEEGAMESSSEC
GAVMEQYIQAQVQRASDTNLKRESLHKLWPSMFMEMVRDCVLEMRDRPAFRQACLNRLST
QGK
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcggccacaaagacagcagaccaacaacaatacagccattacaggaaggtgtctttct
cccacggtcaacagctataaactgcactttacagcagtgaactctcaaataccagagaga
aatgttcagagaccactggacgtccgatggtctaaagactttacaaacgggataaacatg
gacaccatgaaaatgaatccaccaagacaagacagcaggcttaatgcagacagtggcggc
ggcaggcctctccacacccctgtgctggcgtttgtcagtgagtttatgggccctgagcgt
cccctcctaccccctgctgctgctctacccagtgggctgactggtgacctggggccacag
ccacacagagtgaagcctaggagagcaacaaacagtgcaggggccatcaactcccacagt
acctcacccctcaccctgccaactggaccaggtgatgccatatcattgagtgagaattct
ccctctagttttccaattgcctttcgttcccgtgatgactgtgctttgagtcctgagcga
ctagatttggacaggcgtggtctggaggagtgtcccctgctggagggcatgggtaggctg
cggctgcttaactttcagcacaacctcatcacgcacatccacaatctgtctcatctgcgg
cacctggccttcctagacctgtatgacaaccacatctcccagatgtctggcatctcagcc
ctggcctctctcagagtgcttatgctgggcaagaacagaatccagaggatatgcagtctg
gataacctgactaaactagatgttctggacttgcatggcaatcagatctcccagatagag
aacctttcccacctgtctgagctgcgtgtgttgaacctggcagggaactgcatctccagg
gtggacaacctgcagggcctggactcactgaccgagatcaacctgagacgcaactgcatc
tccactgtgacagaggtggaccagctgccctgcctccagcgcctctttctcagctgcaac
agcatcaccagttttgatgagctagcctgcctgggagagtcgtgctccctttatgagctc
accctggatgggaacccagtagccctggagacatggtacaagcaggccgccttgcgctgt
gtgcttcaactcagacagctggacatgaaacgtgtcacggaggaggagcgacgtatggcc
tgcgtcacggcccggaaggaggatgagaagaagagggagagtcacaagcaggccatgcac
aagagtcctgctcatgttgtgcctcagcagttctacactcaacttgggctcaagtctcag
gactcctcagtgacaagcaaggagaagcggcgtctggccatccgtaatgcagcactgcag
tgggagggggtcagggcctgcctggagcttccggctcagaacggagccaaggaggaaatc
agccctgaggcaagccccgcccacagcccagcccagaccaatggccttgcactggaacct
tctccagatgagcagctcagacgggtgagtccggtgtcggctctggacaggccaacaggg
ggcagtgagacccggatacgctccaccagtcgccccaacagtcctcgagaccccaagctc
ctggaggcagggggtgtcaacctgcagagcctctccctgtcagacagccacctggcggag
ttggatggggaaaccctgcgcctgttcggcctcggagcactggaggccctggagagaggc
tggggggtccagactgcaggagccgtcactgtcatagccttccgctacatccactttgat
gcgatcgtgccaacactgccacgcataagggtcaagttccccaacctatctcatctgatt
ttcctggaaaccaacgtcagccgtcttccccagctggctgctctggcccaggtgagacgt
ctggaccagctgaccatccacccagaggggaaccctgtagtcagcctttccctgtggaga
tccttcctcatctaccgcctgcaccacttcaacctgcacaagatcaacaacctagaggtg
accatgaatgacatgatctctgcagagcgtctgtttgggacgctgggtcatatcgctgcc
accgagacaccacgctgccgcctgctagtactgctggaggagtccaggaagcgtcagctg
cagtttctgttggaggggcgtgggcgccgtgcaggcttgagcccagaggagctgcgtgac
aacggcaagctgctgggagagggcctgagcagagccctgttcaactaccccagtagagac
tgctgcagtgtgggagcggagagcccagaggagggtgctatggagtcgtcatcggagtgc
ggagccgtgatggagcagtacatacaggctcaggtccagagggcatctgacaccaacctg
aagagggagtccctccacaaactgtggccctccatgttcatggagatggtgagagactgt
gtgctggagatgagggaccgaccggccttccgtcaggcctgcctcaacaggctctccaca
cagggaaagtga
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