Oncorhynchus nerka (sockeye salmon): 115112534
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Entry
115112534 CDS
T07952
Symbol
pkd1l2
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115112534 (pkd1l2)
04091 Lectins [BR:
one04091
]
115112534 (pkd1l2)
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
115112534 (pkd1l2)
Lectins [BR:
one04091
]
C-Type lectins
Others
115112534 (pkd1l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Ion_trans
Lectin_C
GPS
Motif
Other DBs
NCBI-GeneID:
115112534
NCBI-ProteinID:
XP_029495483
LinkDB
All DBs
Position
LG27:52985099..53000985
Genome browser
AA seq
2314 aa
AA seq
DB search
MALLLSLSCAEDEMAPLSYPEYQEGFDGSCYEFVALPRSFLSGQGWCERGGGHLAFILNI
DTQQFLQKHLQPEQDWWLGLAPASPNLTLDSAVAEGPLSWLDGSDVSYSNWVNDPDPGAG
CGHILRSSGFQWEATSNCSQELHFICQFVQKNVILQKPIGEFGVIKCYSMNQSTDGANCK
ALYGSPLQIQVEVEAGTNVTYKLHSGEMLVANSSAVRGIVPHNITVGPEVEQQLGSGCHQ
LTLHASNGVSVLGVSTELQVCLLEPVEGLLGSVMAEEGECPDSDLYVSVSLDRGAPVQLL
FQVSGANDSISETRDMQNSSMQVYNISTTIQGFLQVKVRAWNVFSHMDVDVGNTTVVCHN
SSDLRQNGYANTTEKHMRVRRAYTLRITAIPETASQDTESVKLEVTGLGGLSNGKQRKFE
WECKEDCKGKCNDKTTDTTRLIEKDCLPNPFEFFEYTFSVKKRSGDGKWVDLISTSQCIT
VTPTNFANFRICCQDNCNIVDVKKDVKFKLDCNSSCPKVIWQIEDPKPSTGALQNCYNNA
GKKPLTERKDQDGQKEYKVSKNYLKEASDRLQNLHVIVYDKETFEYAKYTIQIPGVTTPA
PADTTPPVTSAPTITLSPPSCRIYPPNGTVLDPFDITCTTPTSCTNGCQYCFKTDQGKHL
RCSSVNKVTLIFLPVGEISSNYMLSVKVTVTELNTKTRGSTTINTEVRPAKSGTPVQELQ
SAVANTVANLGQQGMLSGETLGQMFKSVSDILNKGSSEEKNDRMKLREQMLMNITEALEN
SSSSTPQKVQLMARAVAGLTKRGDELSPDAQLEASFLVANLSSSLLSMNVSEHGGEEEMV
QAATPIVEAASNILDVSSNREVSDLLLKGMDNVQSALLNWKKVDEAPVIVNSSQITVFVN
RVSTEAIQMQSISNPISPSASFFFPPLGADVLSPDEPVDVRMLSFKKNPFSWSEENNITG
TVGSVSLTRGNGSVIPIENLSEEIEIFLPRPEGVQANSTILYLGNYSTLTVDVPSPDVTL
VLKIKPSTDITFQLFLGYKDYPNDKQYIAKTQMPHQSNTQEEKYTWVLGPKDLTGKVGVH
YLVVRPIVEAGVKSVNATVTVTSIAAQCKYWNETLSTWSEDGCRVGPLTTLLATQCLCTH
LTFFGNSFFVMPNLVDVSRTAELFGTFAQNPVVVCFIGSIFVAYVLVVIWARRKDIQDTA
KVKVTLLEDNDPLAEYRYMLNISTGHRRGASTSSQVTVTLLGMQGESEPHHLTDPDKPVF
ERGAVDMFLLTTPFSLGELQSIRLWHDNSGGHPAWYINKVMVQDVETGQKWHFLCNSWLT
IDMSKCTLDKVFPVTTEMDLKKFSNMFFMRTAKDFCDGHIWFSVISRPPTSTFTCVQRVS
CCLSLLLCTMLTSIMFWGIPTDPSEQTMDLGHIEFTWQQLMIGVQSSIIMFPINLLIVSI
FRNTRPRETKPGKPKAEVSEQGKTGRVSPSQPSSPQRDRELTPDRVIKDIKKIAQSLSKA
MKSPIPRLELEMKSGPQTDINTLLSLVEDIIRQQNRASGEFYTDASKKEGSLILSLGVTN
LQETSLCGSPEKTGDGRQKRSNNSQYLYRQLRHVEKELSLLGHSRFPNPDSYCRAVQQVQ
GMKGLLESSSLAGDELAQSPGQAESSDGDSGSKKCCQDGLPWWFVFIGWILVVATSGVSG
YFTMMYGLTYGKDRSISWLISMFVSFFQSLLIIQPLKVLGFAAFFALVLKKVDQEEYGDP
KIEGALRNPDDPDIVWAVRRDSTRSFYQPPPPTDVERMRNNMIKEQKVFALIKEILTYMG
FMWMLLLVAYGQRDPNAYFLIQHIRQSFSQGISDSMSHGNVFTWANTSLLSNLFGEYPGF
ITDGNSKLVGNARLRQVRVQKNSCRIARSMRQAVPDCHAPYSWEVEDMGSYGPGWNRSAS
ENTSKTLRSPWQYQTQARLRAQPIWGSVVLYRGGGFVVDLGPDSQNASSTLQYLFDNTWL
DMFTRAVFVEFTVYNANVNLFCIITLMLETTAVGAFQFRSELQSVRLYQSTGGLHIFVMA
SEVIYFLFIFYYMYVQGKLMKQQKWAYFKTKWNLLELAIILLSWSALSVFIKRSLLGNRD
MEYYHNHKDQFASFHETATADAVLGYLIAFLVLLATVKLWHLMRFNSKLHMITATLQRAW
TDISGFILVITIMFLAYSMISNLMYGWKLYSYRTLLDSALTMVSLQLGIFNYDEVLDYNP
VLGAFLIGSCIIFMTFVFLNLFISVILVAFTQEQMHHKPSEEEEIVDLMLMKFCSLFGIK
YKKEESNSPNVIANHASVTKQEPSTISSEMLSSQ
NT seq
6945 nt
NT seq
+upstream
nt +downstream
nt
atggctctcctcttaagcctgtcttgtgcggaggatgagatggcacctctatcctaccca
gagtaccaagagggttttgacggctcctgttatgagtttgtggctctaccgcgttccttc
ctcagtggacagggctggtgtgagcggggtggtggacacctggccttcattctaaatatt
gatacacagcagttcctacagaagcacctgcagccagagcaggactggtggctgggttta
gcacctgcttccccgaacctaacactggactctgctgttgctgaaggtcctctctcctgg
cttgatggctctgatgtcagctactctaactgggtgaacgaccctgatccaggggctggc
tgtggtcacatactgaggagctcagggtttcagtgggaggcaacaagcaactgtagccag
gagctgcacttcatctgccaatttgtccagaaaaacgtcatccttcagaagcccatcggg
gagtttggcgtcattaagtgctatagcatgaaccaatcaacagatggtgcaaactgcaag
gccctgtacggaagcccccttcaaatccaggtagaagtagaagctggtacgaatgtgacc
tacaaactccacagtggtgagatgttggtggccaattcatcagcagtcagaggaatcgtc
ccccacaacatcacagtgggaccagaggtggagcaacagctgggctctggttgccaccag
ctgaccctgcatgcctctaacggggtctcggtcttgggcgtgtccactgagctgcaggtg
tgtctgctggagcctgtggagggcctgctgggatcagtgatggctgaggagggggagtgt
ccagactcagacctctatgttagtgtctccctggaccggggagccccggtgcagcttctc
ttccaggtgtctggagccaacgacagcatctctgagaccagagacatgcaaaacagcagc
atgcaggtttacaatatctcaaccactatccaaggatttttgcaagtgaaagtcagggcc
tggaatgtcttctcacacatggatgtggatgtggggaacacaacagttgtttgtcacaac
agttcagacctcaggcagaatggctatgcaaacacaacagaaaagcatatgagagttcgc
cgagcctataccttgagaattactgccattccagaaactgccagtcaagacactgaaagc
gtcaaacttgaggtaactggcttaggaggactatcaaatggaaagcagcgcaaatttgaa
tgggaatgcaaagaagactgtaaagggaaatgcaatgataaaacaacagacacgactcgt
ttgattgaaaaagactgtcttccaaacccatttgagttttttgaatacactttttctgtg
aagaaaaggagtggcgatgggaaatgggtcgacttgatttcaacatcccaatgcatcacg
gttactccaacaaacttcgccaactttagaatttgttgccaggataattgtaatatagtg
gatgtaaaaaaagatgtcaaattcaaattggactgtaactccagttgcccaaaggtaatt
tggcaaattgaggacccaaaaccttcaacaggtgccctgcaaaactgttacaacaacgca
gggaaaaagccacttacggaaagaaaagatcaagatggtcagaaagagtacaaagtcagc
aaaaactacctgaaagaagcttcagataggcttcagaatctccatgtgatagtttatgat
aaggaaacttttgaatatgccaagtacaccattcagataccaggtgttacgactcctgca
cctgctgatactacgccacctgtaacctctgctccgactatcaccttaagtcccccttca
tgtcgtatttaccctccgaatggcaccgttctggatcctttcgatatcacctgtacaaca
cctacatcctgcacaaacggctgccaatattgttttaaaactgaccaaggtaaacatctg
cgctgcagttctgtaaataaagtaacgttaatcttcctacctgttggggagataagcagc
aactacatgctgtcggtaaaggtgactgttacagaattgaacacaaagacacgtggaagt
accacaatcaacactgaggtgcggccagccaagtccggtaccccagtgcaggagctccaa
tctgcagtggcgaacacagtggctaatctagggcagcaggggatgctctctggagagacc
cttggacagatgttcaagtctgtgtcggacatactgaataaaggctccagtgaggaaaag
aatgacaggatgaagctgcgagaacagatgctgatgaatataactgaagcactggagaac
agctccagcagcactcctcagaaagtgcagctgatggccagagctgtggcaggactcacc
aagaggggtgatgagcttagtcccgatgctcagcttgaagctagcttcctggtggcaaac
ctcagctcttccctcctctccatgaacgtcagtgagcatggtggagaagaggagatggtg
caggcagctacaccaattgtagaggcagccagcaatatcctggatgtttcctcaaacaga
gaagtctctgatttacttctcaagggcatggacaatgtgcagagtgcactgttgaattgg
aagaaggttgatgaagctcctgtgattgtcaacagctctcagatcactgtgtttgtgaac
agagtatcaacagaagctattcagatgcagtctataagcaacccaataagcccctctgca
agctttttcttccctcccctgggtgctgatgtcctttctccagatgaaccagtggacgtg
cgaatgctaagtttcaagaagaacccattttcatggagcgaggagaacaacattaccggc
actgtggggtctgtctccctgacaagaggaaatggttctgtcatccccatagagaaccta
tctgaggagattgagatcttcttgccaaggcctgaaggagtgcaagcaaacagcacaata
ctgtacttgggaaactacagcacactgacggtcgacgtcccttcacctgatgtaacactg
gtgctgaagataaagccatccacggacataacctttcaactgttcctggggtataaagac
tacccaaacgataaacaatacatagccaagactcagatgcctcaccagagcaacacgcaa
gaggagaaatacacctgggtcctgggtcccaaagatttgacaggaaaagttggagtgcat
taccttgttgtgaggcccattgtggaagcaggggttaaatccgtcaatgccactgtgact
gtcacctccattgctgctcagtgcaagtattggaatgaaaccttatccacctggagtgaa
gatggctgcagggttggtcctttaaccacgctattggccacccagtgcttatgtacgcac
ttgaccttcttcgggaactctttcttcgtcatgcccaacctcgtagacgtgtcgcgtacg
gctgagctctttggcaccttcgcccaaaatcctgtggtggtgtgctttattggttccatc
tttgttgcttacgtattggtggtcatatgggcacgcaggaaggacatccaggacacagcc
aaggtgaaggtgacattgttggaagataatgacccattagctgaataccgttacatgctg
aatatcagcactgggcatcggcgtggtgcttccacctcctctcaggttactgtgactctg
ctgggcatgcagggagagagtgagccacaccacctcactgaccctgacaagcctgtgttt
gagaggggtgcagtggatatgttcctgttgaccacacccttctctctgggggagctgcag
agcatcaggctgtggcacgacaactcaggggggcacccagcctggtacataaacaaagtt
atggtgcaagatgtagagacaggacagaagtggcacttcctatgtaactcatggctgacc
atagatatgagtaagtgcactctggataaagttttccctgtaaccacggagatggatttg
aagaaattcagcaatatgttcttcatgaggacggcaaaggatttctgtgatggccacata
tggttctctgtgatcagccggcctccaacgagcaccttcacatgtgttcagcgagtctcc
tgctgtttatctctgctgctgtgtaccatgctgaccagcatcatgttctggggcatcccc
accgacccctctgagcagaccatggacctgggtcatatcgagttcacctggcagcagctg
atgattggagttcagagttcaatcataatgtttccaattaatctcctcattgtgagtatc
ttcagaaacacccgcccccgagagacgaagcctggaaagcccaaggcagaggtgtccgag
caagggaagactggcagagtgtctccctctcagccctcctccccacagagggacagagaa
ctcacaccagacagagtcatcaaggacataaagaagattgctcagtcactctccaaggct
atgaagagccccattccacgcctggagttagagatgaagtctggaccacagactgatatc
aacactctgctctctctggtggaggacatcatccggcagcagaaccgagccagtggagag
ttctacactgatgcctccaagaaagagggatcgctcattctctcactaggggtaaccaat
ctgcaagagaccagcctgtgtgggagccctgagaagactggggatgggagacagaaaagg
agcaacaacagccagtatctgtacaggcagctacgccatgtagagaaggagctgagccta
ctgggacattctcgcttccccaacccagacagctactgccgggcagtgcagcaggtccag
ggcatgaagggactgctagagtcttccagcctggcaggggatgagctggctcaaagtccg
ggccaagctgagagtagtgatggggacagtggcagtaaaaagtgctgtcaagacgggctg
ccctggtggtttgtgtttatcggctggatactggtggtagccaccagcggagtatcagga
tacttcaccatgatgtatgggctgacctatgggaaggaccgctctataagctggctcatc
tccatgttcgtttctttctttcagagcctcctaatcattcagccgctgaaagtgctaggt
tttgcagccttctttgctctcgttctgaagaaagttgatcaggaggagtatggggatcca
aaaattgaaggggcactcagaaacccagatgaccctgatatagtctgggctgtcaggagg
gatagcacacgtagcttctaccagcccccgccacccacagacgtcgagaggatgaggaac
aacatgatcaaggagcagaaggttttcgccctcatcaaagagattctcacctacatgggg
ttcatgtggatgttgctccttgtggcgtatggtcagcgggaccctaacgcttacttcctg
attcagcatattcggcagagcttcagccaagggatctcagacagcatgagccacggaaat
gtcttcacctgggcaaatacctctcttctcagcaacctcttcggagagtacccaggtttc
atcacagatgggaactccaaactggttggtaatgcccgtcttcgccaggtgagggtgcag
aagaattcctgccgaatcgcccgctccatgcgccaggctgtacctgactgccatgctcca
tactcatgggaggtggaggacatgggctcctatgggccaggctggaaccgctctgcgagt
gaaaacacctccaagaccctccgcagcccctggcagtaccaaacccaggcccgactcaga
gctcaacccatctggggcagtgtggttctctacaggggaggggggtttgtggtggacctg
ggccctgactcacagaatgctagcagtacccttcagtatctgtttgacaacacctggctt
gatatgttcacccgagcagtctttgtagagttcacagtgtacaatgccaatgtcaacctc
ttctgcattatcacactcatgctggagaccacagctgtaggagcgttccagtttcgcagt
gagctgcagagtgtccgactataccagtccaccggtggactccatatctttgtcatggca
tctgaggtcatctatttcctctttatcttctactacatgtatgttcagggaaagctgatg
aagcagcagaagtgggcttacttcaagacaaagtggaacctgctggagctcgccatcatc
ctcctgagctggagcgcactgtctgtcttcattaagaggagcttgctagggaaccgggac
atggagtactaccacaaccataaagaccagtttgccagtttccatgagacagccacagca
gatgcagtgctggggtatctgattgcattcctggtgctactggctacagtcaaactgtgg
cacctgatgaggttcaactccaagctacatatgatcacagccacactgcaacgtgcctgg
actgacatatcaggcttcatactggtcatcaccattatgttcctggcctattctatgatt
tctaatctgatgtatggctggaagctgtactcatataggactctcctggattctgctctg
accatggtcagcttgcaactgggcatcttcaactatgacgaggttcttgattacaacccg
gtgcttggagcgttcctcattggctcctgcattatattcatgacctttgtgtttctgaac
ctgttcatctcagtcatcctggtggcgttcactcaagagcaaatgcatcacaagccctca
gaggaggaggagatagtggatctgatgctgatgaagttctgcagcttgttcgggatcaaa
tataagaaagaagaaagtaacagtcccaatgtgattgccaaccatgcctctgttactaag
caagaaccctccactatatcctcagagatgcttagttctcagtaa
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integrated database retrieval system
