Oncorhynchus nerka (sockeye salmon): 115112565
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Entry
115112565 CDS
T07952
Name
(RefSeq) cell wall adhesin EAP1-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115112565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115112565
03036 Chromosome and associated proteins [BR:
one03036
]
115112565
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115112565
Coactivators
SAGA/TFTC/STAGA complex
115112565
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115112565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAFH
Motif
Other DBs
NCBI-GeneID:
115112565
NCBI-ProteinID:
XP_029495507
LinkDB
All DBs
Position
LG27:complement(62377990..62413110)
Genome browser
AA seq
737 aa
AA seq
DB search
MASTSDPLEDMLFSEVDEKAVSDLVGSLESQLVGQSNPADTQSENRGAGSTFTANHHLGK
TLPAQVGTTLVQQQQGQHKAGMHQEINSKEISLEKTVTSSSLSSIPSFEEASTTSGTGVN
ATKSGLQSHGTSSITTLPAFGGVATSPLVNSINSTTTSRGSALASGQTSTDIVDHPRKRI
TASLRSASAGIQSLNGTGGAVTSRNNPPAAGTAALISSASAANSSRTVDVTSCVNTTNFT
LSNSRISSTQSAIPLDKGTPTIALQRLPSHIVASIAHNGNGTTVSALVKQGAIGPITSAA
ASQVNHKKEGSEAKSDAPVQSKIVMSSPLGVVNSVINSVSSPSAVSNIAAATTASHVMAK
SAVNVVGQTTTVGMVRPASPAVATATQPLLQPGVPAAQRTVAPQLIVRPPQQPQTTIQLP
PGFTIPPGMVLVRTEMGQLVMVPQQALAQAQAQAQAQAQNNISPRTATPTAGATFRATTP
QKGPMAPAVAVTAPQQAPVVMAPQVQAGAQAASQPALPPQTSVPVAPGASVISQEMQENV
KKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEPEEFTNRLQSELKSSPQPYL
VPFLKKSLPALRLSLLNIQHSLIQPLPQAKATPTTGTSSAIMAVPAVRGRLPNSVNTTGA
SVGAQDTQLPWTHIGARGLTEEQEDTSGVRCLPLTMAMCSHARTPACCRQRLGNKAASTC
CLVPYNTDSQNQRLLTV
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcacctccgacccactggaagatatgttattttctgaggtggatgaaaaagct
gtgagcgatttagtgggctctttggagtcacaacttgttggacaaagcaaccctgcagat
actcagtcggaaaacagaggtgctgggtctacattcactgcaaaccatcacttagggaaa
acgctaccagcccaagtgggtactacactagtacagcagcaacaaggacaacataaagct
gggatgcaccaggagataaactctaaagaaattagcttagagaaaactgttacatcttct
tcgctgagttctattccgtcctttgaggaagcttccaccacttcagggactggagtaaac
gctaccaagagcggtttgcaatcacatggaacatcatctatcacaacactacctgcattt
ggtggtgtagcaacttctccgcttgtcaacagcatcaacagcaccaccaccagccgaggt
tccgctctggcttcaggtcagacatcaacagacattgtcgatcatccaagaaaacgtata
actgcatcgttacggagtgcatccgcgggaatacagagtttgaacggtaccggaggagcg
gtaacgtcaaggaataatccccctgcggcgggaactgctgcgttgattagcagtgcaagt
gcagcaaactcaagtcggaccgttgacgttacatcttgtgtaaatacgacgaatttcact
ttatctaactccagaatttcttcaactcaatcagcgattcccctggataaggggactcct
actattgctttgcaaagactaccaagtcacattgtagcgagcatcgcacataatggaaat
ggcactaccgtttcggccttggttaaacaaggcgcgataggaccgatcacttctgcagca
gcttcgcaagtgaaccacaaaaaagagggttctgaagcgaagtcggacgctcccgtacag
tccaaaatagtcatgtccagtccgttaggtgttgtcaattccgtaataaactctgtttcc
tctccctctgccgtttccaacatagcagcggcgactactgcaagtcatgtcatggcaaag
tctgctgtcaatgttgttggacaaacaacaactgttggaatggtaaggccagcgtcaccg
gctgtggccacagctacacagcctctgcttcaaccgggagtcccagcggctcaaaggact
gtagccccccagctgattgtcagacccccccaacaaccacagacgaccattcaactgcct
cctgggtttaccatcccacccggaatggtgttagtgcgcactgagatgggtcagctggtg
atggtcccacagcaggcccttgcccaggcacaggcccaagcccaggcccaggcccagaac
aacatctccccccgaactgccacccccactgcaggggccaccttcagagccactacccca
cagaagggccccatggcgccggctgtggcagtgacggctccccaacaggcccccgtggta
atggccccccaggtccaggctggggcccaggctgcctcacagccagccctgcccccacag
accagcgtccctgtagccccaggagcctctgtcatctcccaggagatgcaggagaatgtg
aagaagtgtaagaacttcttggccaccctgataaagctggcttcccacaactctccgtca
cctgagacctccaaaaatgtcaagtcactggtccaggatctactggatgctaagattgag
cctgaggagttcaccaacagactgcagtcagagctcaagtcgtctcctcagccctacctg
gtccccttcctcaagaaaagcctcccggccctgcggctgtctctgctcaacattcagcat
tccctgatccagcctctgccgcaggccaaagccacccccaccacaggcaccagctctgcc
atcatggccgtcccagctgtccgcggccgcctccccaacagtgtcaacaccacgggggcc
agtgtcggggcccaggacacacagctgccctggactcatataggtgctcgtggccttaca
gaggaacaggaagacaccagcggggtgcgatgcctgccgctgacgatggcgatgtgttcc
catgcacggacgcccgcctgctgcaggcagagactagggaacaaggcagcatcaacgtgc
tgccttgttccctacaacactgacagtcagaaccagcgactgctgacggtgtga
DBGET
integrated database retrieval system