Oncorhynchus nerka (sockeye salmon): 115112606
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Entry
115112606 CDS
T07952
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115112606
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115112606
09142 Cell motility
04820 Cytoskeleton in muscle cells
115112606
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115112606
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115112606
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115112606
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115112606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115112606
NCBI-ProteinID:
XP_029495515
LinkDB
All DBs
Position
LG3:53349411..53472038
Genome browser
AA seq
1697 aa
AA seq
DB search
MSGAMQATHQRQLKNLRFLILCFSVAILASGVDAGGKKHNGPCGGRDCSGGCQCFPEKGA
RGQPGLLGSQGPQGPPGRLGDPGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGFSGLDGI
PGHPGQAGPRGKPGADGCNGTHGDSGSAGQPGYDGQPGYNGQMGRKGQKGDTLELSVFME
RFRGDSGQPGYPGLVGPQGYPGRSGYRGLPGPQGPQGYPGLPGPKGTMTKVLKGVKGEPG
DAGKPGPQGNSTHSQTSPITGPNGIKGAKGLKGDTGPEADNKGETGVIGMPGQRGIPGRD
GEQGLRGDLGEPGLRGRDGQKGSRGEQGELIYHDGPSGGQDRVGPPGPPGQLGPQGQRGL
EGEKGLPGRAGPPARKDHDQQQVVDLWGPFGEPGVKGEMGEPGELGIPALSPGPPGINGL
PGLGGPPGPPGSWADFYKGFSGPRGRPGSAGRKGLKGDHGLCECNIVHSPPGLPGPAGSQ
GDTGKSGEVGQQGESGEPGPRGVIGLPGFPGATGQPGPKGRKGDFIQAKEKGYAGDPGDP
GATGDPGMQGLPGPSGINGFPGNRGPSGDAPAGLTGEKGYQGRPGLPGLLGQMGEPGRVL
GATKGVRGLQGDDGERGHAGIEGRAGDPGVSGCSPRGDGEQNDITGSWTNTILIKLLNFT
TGDCDAIPGPPGIPGPPGPHGLEGFLGLPGQKGSTGLLGDNGAKGEIGDQGRGGSPGYPG
FRGLHGDLGQPGSKGNSGTQGLPGQQGRNGEPGEKGPHGEIWGASTGQRGEVGLPGEQGP
KGLSGEPGNEGYPGMGGMPGMIGFKGDVGPSGLQGEQGGPGAAGKYGWPGVPGTAGVPGP
TGSTGQPGLSGNRGDQGDPGTPGPIGIKGTLGEFGSQGAEGNTGDQGDPGVPGPTGHSGL
PGFKGIKGSRGMSGFGGMPGVSGLKGFSGQKGETGNPGEFGQKGNMGDYGSKGDRGLRGP
AGEKPHIPRQIIKDMKGTKGEDGTTGQIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDEKG
FQGNPGAQGLPGPKGMPGLTGSNGISGFPGMSGHRGDKGNPGAYGSSGDPGVKGVKGEGG
AVIDMPGSTGLRGEDGFPGVPGQKGYIGNLGDRGGGGFHGIEGMKGVPGEPGTGGPVGSD
GQQGFPGNQGTKGWPGVPGESGTHGQPGFPGQRGFPGLKGIFGLDGLKGQKGIPGLPGQD
NFGTPGDPGVKGARGETGIPNSEVGTPGSLGLKGVQGQPGDQGQVGPPGFQGPQGPQGTS
DRPGPSGEPGFPGPKGLPGFPGPRGLPGEPSQYGEKGLTGQYGVTGFPGLKGKQGDQGPS
GYQGQSGVSGKKGVKGGQGMMGFPGRSGFQGDRGPSGPKGSTGLTGYPGFPGNQGPAPLP
TRMPGERGAPGPQGIRGPEGVRGESGPIGPPGDPGYFGPQGQKGMPGVGGRPGTPGYRGN
VGGRGHLGLQGMEGHHGNPGTTGLHGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDG
YSLLYFEGQEKAHNQDLGLAGSCLPRFNTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLP
MMPVEEGDIKPYISRCSVCEAPSVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDE
GGGQSLSSPGSCLEDFRTTPFIECNGAKGTCHYFANKHSFWLTSIEQSFHAEPASETLKA
GQLLSRISRCQVCMKNL
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggcaatgcaggcaacacaccagagacaactgaagaacctgaggtttctgatt
ctatgtttttcggtggccatcctagcgtcgggagttgacgcaggtggaaagaagcacaat
gggccatgtggagggagagactgcagcggagggtgtcaatgcttccctgagaaaggtgcc
agaggccaacctggtcttcttggttctcagggcccccaggggcctccaggacgtctaggg
gacccaggagtccagggagtccagggagagaagggcgacaggggcagaggaggcttcatc
ggccccaagggttctgtggggatgactggtgttcctgggttttccgggttggacggtatt
cctggccacccaggacaggctgggcctcgtgggaaacctggagcagacgggtgcaacgga
acacacggagactcagggtcggcagggcaaccaggctacgatggccagcccgggtataat
ggtcagatgggcaggaagggacagaagggagacactctggagctgagtgtgttcatggag
cgcttcaggggagattcaggccagcctggatatcctggattagttggtcctcagggttac
ccaggtcggtctggctacagaggactcccgggaccacagggcccacaagggtatcctggt
cttcctgggccaaagggcaccatgaccaaagtgttgaaaggggtcaaaggagaacctggt
gacgctggaaagcctggtccccaagggaactccacccattcccagaccagtccaattact
ggacccaatggcataaagggtgcgaaagggttgaaaggtgatactggtcctgaggctgac
aacaaaggagagactggtgttatagggatgcctggacaacggggcatccctggtcgggat
ggagagcaaggactgaggggggacttgggagaaccaggactgaggggcagagatggtcaa
aagggttccagaggagaacaaggggagctgatttatcatgatggtccctcaggagggcag
gacagagttggtccccctggtcctcctggacagctgggtccccagggccagaggggtctg
gagggggaaaaaggtcttccaggccgcgctggacctcctgccaggaaggatcatgatcaa
caacaagtggtggatctgtggggtccattcggagagccgggggtaaagggagagatgggc
gaacctggagagctaggtatccctgccctcagccccggacccccgggtatcaatggcctg
cctgggctcgggggcccacccggaccaccaggatcatgggcggacttctacaagggattt
tcagggccgagagggcggcccggctctgcgggaagaaaaggactgaaaggtgatcacggg
ttgtgcgagtgcaacattgtccattcccctccgggcctgcccggccctgctggtagccaa
ggcgacactggaaagagtggcgaggttggtcagcagggagagtcaggagagccaggaccc
cgaggtgtcatcggacttcctgggttccctggtgccacaggacaaccgggtccaaagggc
aggaagggcgacttcattcaggccaaagagaaaggatatgccggagacccaggagaccca
ggtgcgacaggtgacccaggaatgcagggcttacctgggcccagtgggatcaatggattc
cctgggaatcgtggtccttcaggagatgcacctgctgggctcactggagaaaaaggttat
cagggccggccgggtctgcctgggttgttgggacagatgggagaaccaggacgggttcta
ggtgcaactaaaggggttcgagggttgcaaggcgatgatggggagcggggtcatgctggt
atcgaaggtcgagctggcgatccaggagtgtctggctgtagtccgagaggagatggagaa
cagaatgacatcacaggtagctggactaacaccattttgatcaagttactcaacttcacg
actggtgattgcgatgccatacctggacctcccggtataccaggaccaccaggaccccac
gggttagaaggtttcctaggtctcccaggtcaaaaaggatcaacaggtctacttggagat
aacggggccaaaggagagataggagatcaaggcagaggagggtcacctggatatccaggt
tttaggggcctccatggagacttgggtcagcccggctcaaagggtaattctggaacccaa
ggtctgccaggtcaacagggtcggaacggggagccaggagagaagggacctcacggggag
atctggggagcgtcgaccggacaacgtggagaagtgggtcttcctggagagcagggacct
aaagggctcagcggagagcctggaaacgagggttacccagggatgggtggcatgcctggt
atgattgggttcaagggcgacgtaggtccttcaggtctgcaaggggagcaaggaggaccg
ggagctgctgggaagtatggctggccaggtgtacccggaacggctggtgtccctggacca
acaggaagcaccggacaaccaggtttgagcggaaacaggggtgatcagggggaccctggc
acaccagggcccataggaataaaggggacactgggggagtttggtagtcagggcgctgag
ggaaacaccggagaccagggtgaccccggagtgccaggacctacaggacactctggcctg
ccagggttcaagggtatcaaagggtctcgtggcatgtcagggtttggaggaatgcctggt
gtgtcgggcctgaagggcttctctggacagaaaggagagactggcaatcccggcgaattt
ggacagaaaggaaacatgggcgactatggttcaaagggtgaccgtggtctgaggggtcca
gctggcgagaaaccccacatccctcgtcagatcatcaaagacatgaaggggacaaaggga
gaagatggaaccacaggacagatcggattcactggacccagaggtcctaaaggttttccc
ggtgttccgggaatggagggctaccacggcgttcccggagaccccagcgatgagaagggt
ttccaaggcaacccaggcgcgcagggacttccggggccaaaaggaatgcctggtctgaca
ggatcaaacggaatcagcggctttcccgggatgtctggtcacaggggggataaaggtaac
cccggtgcctacggatcctcaggagatccaggagtgaagggtgtcaaaggtgaggggggt
gccgtaatcgacatgcccggatccacaggactgaggggggaggatggtttccctggggtt
ccaggtcagaagggctacattgggaatctgggagacaggggaggtggaggtttccatggt
attgagggcatgaagggcgtgccaggtgaacctggcacaggaggacctgtaggatctgat
ggtcaacaagggtttccaggcaaccagggtacgaagggatggcctggggtccccggagaa
tcaggcacacatggacaaccaggcttccccggacagagaggtttcccgggactaaagggt
atattcggactggatgggctgaagggtcagaagggaatccctggacttccaggtcaggat
aactttggaaccccaggtgaccccggtgttaagggagcgaggggagagacaggtataccc
aactccgaggtcgggacacccggatcgctgggtttgaagggagttcaaggacaaccaggt
gaccagggccaggtgggacccccagggtttcagggcccccaagggccacagggcacctca
gacagacccggaccttcaggagaacctggcttccctggacccaaaggactgccaggtttc
cctgggccccgtggtttacctggtgagccctctcaatatggagagaagggtttaactggc
cagtatggcgtcactggattccctggtctgaaaggaaagcagggggatcagggaccatca
ggataccaaggacagagcggagtgtctgggaagaaaggtgtgaagggaggtcaggggatg
atgggatttcctggtaggtctggtttccaaggagaccgaggtccttccggcccaaaagga
agtactggactcacaggttatccaggattcccaggtaaccagggcccagccccactaccc
accaggatgccaggagagaggggtgctccaggtcctcagggtatccgaggaccggagggg
gtacgaggggagagcggccctataggaccccctggagatccaggttactttgggccccag
gggcagaaggggatgccaggggtgggtggcagaccaggtacccctgggtaccgtgggaat
gttggagggaggggccatcttggtctgcaaggcatggaaggtcaccatggtaacccagga
actacagggttgcatggcatgccgggccgcagtgtgagcgtgggatacctgctggtgaag
cacagccaatcagagcagacccccatgtgccccgtgggcatgtcgaagctgtgggacggc
tacagtctgctgtacttcgagggccaggagaaggcccacaaccaggacctaggtctggcg
ggctcctgcctccctcgtttcaacaccatgcccttcctgtactgcaaccccggagacgtc
tgctactacgccagccgcaacgacaaatcctattggctgtccaccaccgcgccccttccc
atgatgcccgtggaggaaggtgatatcaaaccgtacatcagccgctgctctgtgtgcgaa
gctccgtccgtcgccatcgccgtgcacagccaggatattaccatcccacaatgccctgct
ggctggcgcagcttgtggattggctactccttcctcatgcacacggcagcaggtgacgag
ggtgggggtcagtctctgtcgtctcctggttcctgtctggaggacttccgtaccacgccc
ttcatcgagtgtaacggggccaagggcacctgccactacttcgccaacaaacacagcttc
tggctcacctccatcgaacagtccttccatgcagaacctgcctcagagaccctgaaagca
ggccagctcctctcacgcatcagccgttgtcaggtctgcatgaagaacctgtga
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integrated database retrieval system
