Oncorhynchus nerka (sockeye salmon): 115112874
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Entry
115112874 CDS
T07952
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42-like isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
one01002
]
115112874
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115112874
Enzymes [BR:
one01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
115112874
Peptidases and inhibitors [BR:
one01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
115112874
Ubiquitin system [BR:
one04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
115112874
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
115112874
NCBI-ProteinID:
XP_029495755
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Position
LG28:complement(3954225..3981822)
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AA seq
1227 aa
AA seq
DB search
MTIVDRSSEKSDLESVGCKRSGSLNFPGGDGNGMDSGCSSWGAGGPSSSDTPRVKTGGCM
GPTPGATVNSSSADRPKEQVVLTSGDGIALPQKVLFPAERLSLKWNQVHRIGSGLQNLGN
TCFLNSALQCLTYTAPLTNYMLSREHSKTCHEPGFCMMCTMQNHITQVFANSGNVIKPIG
VLNELKRIAKHFRFGSQEDAHEFLRYTVDAMQKSCLPLNKLDRQTQATSFIHQVFGGYLR
SRVKCFNCKAVSDTFDPYLDVALEIKTAPSITKALEQFVKPEQLDGENAYRCAKCKKMVP
ASKRFTIHRSANVLTISLKRFANYNGGKIAKDVRYAECLDLRPFMSQSHGEPQVYVLYAV
LVHSGFSCHAGHYYCYVKASNGQWYQLNDSSVLVSDIRSVLNQQAYVLFYIRSPDLKNGG
DYNHTCRTAGPLGQLSPRPILTPRVNIGPRHTSTGFIGPQLPSHMAKNIFHVNGNGSLRD
YPSGSKPSTSSDNSMGKTSYSPLATSSSHPLNRPTGIPDPAKRQKLSFFIGQGKQIRPSS
SSYAQPSSSSQSTSDMSTPRDPRINGTPSVNRNGHGASFLVPYGQESSEESDQEGGSGLG
NGTAKPHVNGRKGETVYGPVPRVLTLKTNGIGNGQATMHRNGTNSFSKLSQNGHHNIKHP
EKIHGNGHAMSPGLGSSMSNGAEAHHSGPSKEVYCTTPSQASTSQGLHSADIDSRLSLTP
EKKAKTHSGPLPHHVPATAAKPPSTLADVGAKPLTDALRESSSNPGVLFLQPTPRSLSTP
VLSGPGLGATKDLGAPHRGSGEDVRETQNSPAVGLDGKPSSRDGRDQMYSSDREEKGGLN
SSDREEKGGLNSSDREEKGGLNSSDREEKGGLNSSDREEKGGLNSSDRDRDRLYSSDRDK
DGEGDRYHRDRSREHNRDHDSDHYRHRRDHRDRDHHRSYRDRSLSRDRHRNWESEAFLSQ
RRYHPRERDRDRCHHHYHHRTSKDRNRDRREHSHHSLPHREEPHGRSRWRDEGKERCYYP
SQEAPLPTPLSSSTKPSQSLPALSPALVKRPEPHREERKDSSEERRAKKPKKSKKKKSKD
RERHRENRTFDVNSSDRAADGSSSSKHNKSRRYDTDMEDEIHSTQSPEGHRDPNAPREGR
RASSSDDERASKKRRYQDDGYDNSYPKKRHRADDNDRSFSSRDGSPTAAPQNASHCHFNE
HTGNGLGQPNGNSHECSTNGLYNELRQ
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacagatcttcagagaaatctgacctagagtcagtcgggtgcaagcgc
tcaggatcgctgaactttcccggcggtgacgggaacgggatggacagtggctgctccagc
tggggggcggggggcccctcgtcctccgacacccccagggtgaagacagggggctgcatg
ggtcccacccctggagccacagtcaacagcagcagtgcagacaggcccaaggaacaagtg
gtgctgaccagtggggacggcatcgccctgccccagaaggtgctgttcccagccgagcgg
ctcagcctgaagtggaaccaggtccaccgcatcggatcaggtctccagaacctgggaaac
acctgcttcctcaactctgctctgcagtgtctcacctataccgctcccctcactaactac
atgctgtcccgggagcactctaaaacatgtcatgagcctgggttctgtatgatgtgcaca
atgcagaatcacatcacccaggtcttcgccaactctgggaatgtcatcaagcccatcgga
gtcctcaacgagctcaaacggattgcaaagcatttccgctttggcagccaagaggatgcc
catgagttcctgcggtacacagtggacgctatgcaaaagtcctgcctgcctctaaacaaa
ttggacaggcaaacgcaagcaaccagtttcatccatcaagtctttggagggtatctacgg
tccagagtaaaatgtttcaactgcaaagcggtctctgacacatttgacccttatttggat
gttgctttggaaataaagactgctcccagtatcacaaaggctctggaacagtttgttaag
cctgagcagctagatggagagaatgcctacagatgcgctaagtgtaagaagatggttcca
gcctctaagagattcaccatccaccgcagcgctaatgtgctcaccatctcactgaagcga
ttcgccaactacaacgggggcaagatcgctaaggacgtaaggtatgctgagtgcctagac
ctgcgtcccttcatgtctcagtcccacggcgagccccaggtctacgtgctctatgctgtc
ctggtgcactctggcttcagctgccacgctggacactactactgctacgtcaaagctagc
aatggccagtggtaccagttgaatgactcctctgtgttggtcagtgacatcaggtcagtc
ctcaaccagcaggcttacgttctcttctacatcaggtcacctgatctgaagaatggaggg
gactacaatcacacgtgccggaccgcggggcccctcggccagttgtccccccgccccatt
ctcacaccccgggtcaacattgggccacgacacaccagcactggtttcatagggccacag
ctgccctcacacatggccaagaacatctttcacgtcaatgggaacggctcgctaagggac
tacccctctggctctaagcccagcaccagcagtgacaacagcatgggcaagactagctac
agcccgctcgccacctcttcctcccatcctctcaaccgtcccacaggcatccctgaccct
gccaagcgccagaagctctccttcttcatcggtcagggcaaacagatccgcccctcatca
tcctcttatgcccagccgtcctcttcgtcacagtctacatcagacatgtctacgccccgg
gatcctcgcattaatggcactccctccgttaacagaaacggtcacggggcgtcgttcctg
gtaccgtacggccaggagtcgtctgaggagtcggaccaggagggaggcagtggtctgggg
aacggcacggctaagcctcacgttaacgggaggaagggagagacagtctacggccccgtc
cccagagtgctgaccctcaagaccaacggcatcggtaatggccaggctaccatgcaccgt
aacgggaccaacagcttctccaaactcagtcagaacggacaccacaacatcaaacaccct
gagaagatccacggtaacggtcatgcgatgtcgcccggtttgggttccagcatgtctaat
ggggcggaggctcaccacagtggcccaagcaaagaggtgtattgcaccacccccagccag
gccagcacctctcaaggcctgcacagtgccgacatcgacagccgcctctccctcacccca
gagaaaaaggctaaaactcactctggccccctccctcaccacgtaccagcaaccgctgct
aaacctccatccacattggctgatgttggagctaaaccacttaccgacgccttgagagaa
tccagctccaaccctggggtcttattcctccagcccaccccccgctccctcagtacccca
gtcctctctggaccaggcctgggagccacaaaagatctcggagccccacacaggggatct
ggggaggacgtcagggagacccagaacagcccagctgtagggctggatggaaagcccagc
tccagagatggaagagaccagatgtactcttccgatcgggaggagaaaggcgggttgaac
tcttccgatcgggaggagaaaggcgggttgaactcttccgatcgggaggagaaaggcggg
ttgaactcttccgatcgggaggagaaaggcgggttgaactcttccgatcgggaggagaaa
ggcgggttgaactcttccgatcgtgatcgagaccggctgtactcttctgaccgggataaa
gacggagaaggggataggtaccaccgggacaggagccgtgaacacaaccgggaccatgac
tcagaccactaccgccaccggcgagaccaccgagacagagaccaccaccggtcgtaccgg
gaccgctcgctcagccgggacagacaccggaactgggagtctgaggcattcctctcacag
cgacgctatcaccccagagagagggacagggaccgctgtcaccaccattaccaccacaga
acgagtaaggacaggaatagggacaggagggagcacagccaccacagcctcccacacaga
gaggagcctcatggacgctcaaggtggagggatgaaggtaaagagaggtgttactaccct
tcacaggaggcccctctgcccaccccactgagctccagcactaagcccagtcagtccctc
ccagccctttccccagccctggtgaaacgacccgagcctcacagagaggagagaaaggac
agctctgaggagcgtcgggccaagaaacccaagaagagcaagaagaagaagtccaaggac
agagagaggcaccgagagaataggacctttgacgtgaattcctctgacagggcagccgac
ggcagcagttcctccaaacacaacaaaagtaggaggtacgacactgacatggaggatgag
atccactctacccagagtcccgaggggcaccgtgaccccaatgccccccgggagggtcgc
agggcaagcagcagcgacgatgagagggcgagcaagaagcgacgttaccaggacgatggc
tatgacaacagctaccctaagaaacgccatcgcgctgatgacaacgaccgctccttctcc
tctcgtgatggatcaccaacagcagctcctcaaaacgcatcgcactgccacttcaacgaa
cacacaggtaatggcttaggtcaacccaatggaaactcccacgaatgttctaccaatgga
ctgtacaatgaacttagacagtag
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