Oncorhynchus nerka (sockeye salmon): 115113155
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Entry
115113155 CDS
T07952
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial-like
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115113155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115113155
03016 Transfer RNA biogenesis [BR:
one03016
]
115113155
Enzymes [BR:
one01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
115113155
Messenger RNA biogenesis [BR:
one03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
115113155
Transfer RNA biogenesis [BR:
one03016
]
Prokaryotic type
tRNA degradation factors
115113155
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH_KRR1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
115113155
NCBI-ProteinID:
XP_029496321
LinkDB
All DBs
Position
LG28:21523353..21531295
Genome browser
AA seq
779 aa
AA seq
DB search
MCNVSFYLNMRHLLRLGPSLARLNVRLCHQSVWNSHGMIRKVGVDFGGKKLEISTGKLAR
FADGSAVVQLGDTTVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNHLRRELGTTE
NEILTSRLIDRAIRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINGASAALSLSDIPWN
GPIGAVRIGLVNGEFLVNPTRKEMASSTINLIVAGAPLSQVVMIEASAENVLQQDFCHAV
KVGVKHTQQIILAIQQMAREAKVSKRTPPKIFSAPLEMIELARQLASEKVYAVFTDFTHD
KISRDDAINKVRLETEEQIKEKYPQAEPYEVMESFNMVSKEVFRNLVLNEYRRCDGRDLT
SLRNISCEADIFKPLHGSALFQRGQTQVLCSVTFDSLESSIKTDIITTALSGVKDKNFML
HYEFPPYATNEIGKMSGMNRRELGHGALAEKSLRPVIPKDFPFTIRVTSEVLESNGSSSM
ASACGGSLALMDAGVPISSAVAGVAIGLISKANPEKPSEIQDYRILTDILGIEDYLGDMD
FKLAGTNKGINALQADVKIPGLPLKLVMEAIQQATVAKREILGIMNKTIAKPRDKRKENG
PVVENVRVPVSRRARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQEFI
TEICKDDQEQLLEFGAVYTAAIMEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALG
LEVGQQIQVKYFGRDPTDGRMRLSRKVLQSPAATVVKTLSEKQSISMGTGNGQATSTSS
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaatgttagcttttacttgaatatgagacatttactgagacttgggccctcgctg
gctcgactaaatgtgcggttgtgccaccaaagcgtctggaacagtcatggaatgatacga
aaagtgggagtggacttcggagggaaaaaacttgagatctcaacagggaaacttgccaga
tttgcagatgggtcggctgttgtgcagcttggggatacaacagtgatggtgacagctgtc
agtaaaacaaaaccgtccccctcccaatttatgcctctagtggtggactacaggcaaaaa
gcagctgctgctggtagaatccccactaaccacctgcggcgggagttgggcaccactgaa
aatgagattctgactagtaggctaatagacagggcaatcagaccgctttttccagctggt
tatttctatgacactcaggtcctgtgtaatctgttggcagttgatggtgttaatgatcca
gatgtactggccattaatggagcctctgctgcgttatccctctctgacattccttggaat
gggcccattggtgcagtgcgcattggcctggtgaatggagagtttctggtgaacccaaca
cgaaaggaaatggcttccagcactatcaacctgatagtggcaggagcaccgctcagccaa
gtggtgatgatagaggcttctgctgagaatgtgttgcagcaggacttctgtcatgctgtc
aaggttggtgtgaagcacacacagcagatcatactggcaattcagcagatggccagagaa
gcaaaggtgtccaagcgcactcctcccaaaatattttctgctcccctggaaatgattgag
cttgcgcgacagttggcctctgaaaaggtctatgctgttttcacagacttcactcatgac
aaaatttccagagatgatgccattaataaagtaaggcttgaaacagaggaacaaataaaa
gagaaatatcctcaagcagaaccttacgaggtgatggagtccttcaacatggtatcaaaa
gaggttttccgcaatctggttttgaatgagtacaggaggtgtgatggaagagacttgact
tcattgagaaatatttcctgtgaggcggacatctttaagccccttcatgggtctgcactt
ttccagaggggacagacacaggttctgtgctctgtaacatttgactccttggagtctagt
attaaaacagacatcattactacggcgttaagtggagtcaaagacaagaatttcatgctt
cactatgagtttccaccttatgcaaccaatgaaattggaaagatgagtggaatgaacaga
agagagcttggtcatggggcactggctgagaagtctttgagacctgtcattcccaaagac
ttccccttcacaattagagttacctctgaggttctggagtctaatgggtcctcgtctatg
gcatcagcatgtggaggcagtctggctttgatggatgctggtgttcctatttcatcagct
gtggcaggtgtcgctattggactcatatccaaggcaaacccagagaagccatcagaaatc
caggattaccgaatattgactgatattctgggaatagaggattacctaggagacatggac
ttcaaactggcaggaacaaacaagggtatcaatgccttacaggctgatgtgaagattcca
ggcttacctctgaaacttgtaatggaggctattcagcaagccacagttgccaagagggag
attttgggcatcatgaacaagaccattgccaagccaagggataaaagaaaggagaatggc
ccagttgtcgaaaatgtcagagttcctgtctccagacgagcacgctttgtcggaccaggg
ggatataacctccgcagactacaagctcaaacaggtgtgacgataagccaggtggacgag
gagaccttctctgtgtttgcacctactccaggtgcaatgaatgaagcccaggaattcatc
acagaaatctgcaaggatgatcaagagcagctgctggagtttggtgctgtttacactgcc
gccatcatggaaataagggacattggtgtcatggtgaagctatatcccaacatgagtgct
gttctgctccataactctcagctggaccacaaacggataaaacacccaagtgctcttgga
ttagaggttggacagcagattcaggttaaatactttgggcgagacccaacagatggtaga
atgaggctttcgaggaaggtgttacaatctccagcagcaacagttgttaagacactgagt
gagaaacagagcatctccatgggcacagggaatggccaagcgaccagcacctcctcttga
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