Oncorhynchus nerka (sockeye salmon): 115113216
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Entry
115113216 CDS
T07952
Name
(RefSeq) VPS10 domain-containing receptor SorCS3-like isoform X1
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115113216
Membrane trafficking [BR:
one04131
]
Endocytosis
Others
Others
115113216
Endosome - Lysosome transport
115113216
Endosome - Golgi transport
115113216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
GBP_PSP
DUF6085
Motif
Other DBs
NCBI-GeneID:
115113216
NCBI-ProteinID:
XP_029496468
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All DBs
Position
LG28:complement(27726482..27790455)
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AA seq
1244 aa
AA seq
DB search
MFISGSVWCWAILTCVLSSFYNMLTAYAEINWPASSTTTNVWLNRVDTLPLELRTNLKSV
WVKIPKYIVKESAFSRAFKMEPIDGKPAVPKGGGRLPKDLKRVIGKVTPDAISSGRDKTA
PNRSKYFTDDRKKSDRFFDVNDGTLALSNRTKRSTADGEYSDRSQIGGPGDAFSAEKLLE
PFGVYSPRTEYRRTGEDARTGPRLSESLLVTSTFPLTGDSAHNQAMGHWVGDNSSVILTL
TKQYDFNLGAFTESSLWRSVDYGSTYIKLNNKVGSTLACLYVCPTNKRKIMMLSDPELEH
SVLISSDEGASFEKHPINFYMDGLLFHPTQENWLLASSPDNKVYSTMDFGRKWQLVSENV
TPGRFFWAQTGLDREADMVHMETHIAKGRAQYVTCRAQRCTESNRQYLFPGHIDQNSLVV
QDNYVFVQVTKSGQASYFVSYMRESFKQIQLPKYCLPKDMHIISTDKKQVFAAVQEWNQN
DTYSLYISDSPGVYFTLSLENLRTRREPGGNVLVDMYKVEGINGIFFANKLVDHEVKTFI
TYNKGQTWALLQAPNTDVAGNSLHCILPFCSLHLHLDMPVNPYLPGRIFSKDSAPGIIVA
TGNIGTELSSTSLGMFITSDAGNSWRQIFEEELGVWFLDNGGALVAVSLVATVPIRHIWI
SLDEGKKWDRHSFSLVPLFLDGALMQPENHIITFTGHLSRISEWQLIKIDYKAIFSRRCM
DGDYQTWNLHNKGEPCVMGEKQTFMKRRPGNRCVLTQDYSRVISSEPCICRAYDFECDYG
YERQADGKCSPAFWFDPNTVPRSCSTSQNYLNSTGYRKVLSNNCKEGGKDVYSPRKQHCS
PRPPRGLRLTTSHGDLTANLGSNITFLVHLDDGNSLWTHIQLDFGDGITVMYNLSRRGDG
IKHSYRAPGIFRVTAHAENSQGYDSSSMFLHITSPVERVYLSAPIVAIRKKEANLTAVVW
PVHQRTLTFFWWFENSSESLITLGGSIAYTFQKEGMNRVVVQVSSGCNILQDTKVIIVKE
FFKSLLLSFSPTLDEHNPDIPEWREDVGRVVRTAVSQVSGFPEEQLLVSLFPGVPTTAEL
FILPETQLSEHGKGNEEGLVSISDILINALNQGLIQFELKPDTQIIVYITQLTSAPLVDS
NPIHSSSAMLMLLSVAFVGLVAFFIFKFKRKIPWIHVQAEENQEKEPERIGTVRQNNTMS
KMTHSEFPSEKELTEKELEARTRGENGRNGERVITREFPTCTNV
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgttcatctcaggttcagtttggtgttgggctattttgacttgcgttttaagctctttt
tacaatatgttgacagcatacgctgaaataaattggccagcgagttccacaacgacgaac
gtttggcttaaccgtgttgatacattgcctttggagctgcgcacaaacctaaaatccgta
tgggtcaaaatcccaaagtatatcgtcaaggaatctgccttttccagagcttttaaaatg
gaaccaattgatgggaaaccggcggttccaaaaggtggagggagattaccaaaggacttg
aaaagagttattggaaaagtgacacctgatgctatatcttctggcagagataaaactgcg
ccaaaccgttccaagtattttactgatgacagaaaaaagtcggaccgtttttttgacgta
aatgacggcacacttgctttaagtaaccgtacaaagcgaagtacagccgacggcgaatat
tcggacaggagtcaaattggaggtcctggtgacgcattttcagccgagaagcttttggag
ccttttggtgtttatagtcctaggacagaataccgacgaactggggaggacgcaagaact
ggtccgaggctaagtgagtcgcttctggtcacatctactttccctctaaccggagactct
gcgcacaaccaggcgatggggcactgggttggagacaacagcagcgtgatcctgaccttg
acgaagcagtatgactttaacttgggtgctttcactgagagttctctctggagatcagtg
gactatgggagcacttatattaaactgaataataaggttgggtcaaccttggcttgcctc
tacgtctgcccaaccaacaagagaaagataatgatgcttagcgacccagagctggaacac
agtgtactcatcagctcagatgaaggtgccagcttcgagaagcatcccattaacttctac
atggacggtctgctgtttcatccaacacaggaaaactggctgctggctagcagtcccgac
aacaaggtgtacagcacaatggactttggaagaaaatggcagttggttagtgagaatgtg
actcctggacggttcttctgggcacaaacgggactggacagagaggcagatatggtccac
atggagacccacatcgccaaaggacgtgctcagtatgttacgtgccgagctcaacgatgc
acagaatcaaacagacagtacctgttcccgggacacatagaccaaaattctctggttgtt
caggacaactatgtgttcgttcaggttaccaagtcagggcaggcgagttactttgtgtcc
tatatgagggaatcattcaaacaaatccaactccccaaatactgtcttcccaaggacatg
cacatcatcagtacagataagaagcaggtgtttgcggctgtacaggagtggaaccagaat
gacacctacagcctgtatatatcagactctccaggggtctacttcactctgtctctagag
aacctccggaccagaagagagccaggcggaaatgtactggttgacatgtataaggtagaa
ggaataaacggcatattttttgccaacaaattggtggaccatgaagtgaagactttcatt
acctataacaagggtcagacctgggccctgctgcaagcccctaacactgatgtggctgga
aacagtctgcactgcatcctgccattttgttctctgcatctgcacctggatatgcctgtg
aacccttacctgcctggacgcatcttcagtaaggactcagcaccagggatcatcgtagcc
acaggcaacattggtacagagttgtcctccactagccttggaatgtttataacatctgat
gctggcaatagctggagacagatatttgaagaagaacttggtgtttggtttcttgacaat
ggaggtgctttagttgcagtgtctttagttgcaacagtacccatccggcacatatggata
agtctggacgagggtaagaaatgggatcgtcacagtttctctctggttcctttgtttctg
gatggagctcttatgcaaccagagaatcacatcatcactttcactggacacttaagtcgt
atttcagaatggcagctgataaagattgactacaaagccatctttagcaggagatgcatg
gacggagattatcagacttggaacctacataacaagggagagccatgtgtgatgggagaa
aagcagacctttatgaaacggaggccagggaaccgctgtgtgctgacccaggactactcc
cgagtcatatcctcagaaccatgcatctgcagggcctatgattttgaatgtgattatggg
tatgaacgtcaagctgatggaaagtgttcacctgctttttggttcgacccaaatacggta
ccaagaagctgtagcactagccagaattacctcaatagcacagggtacaggaaggttttg
tctaataactgcaaagagggaggaaaggatgtgtactcccccaggaaacagcattgttcc
cccaggcctcccagaggcctcagactgaccaccagccatggagacctcaccgccaacctg
ggcagtaacatcaccttcctggtgcatctggacgatggaaactcgttgtggacacatatc
cagctagactttggggatggcatcacggtcatgtacaacctgagccggagaggcgatggg
atcaaacacagctatagagcacctgggatcttcagagtgacagcacatgctgagaacagc
cagggatatgacagcagctccatgttcttacatatcaccagcccagtggagcgtgtgtat
ctctcagctcctattgtggccatcaggaagaaggaagccaacctaactgctgtggtctgg
cccgtccaccaaagaacactaacctttttctggtggtttgaaaacagctctgagtcctta
ataaccttgggtggaagcatcgcgtacacgtttcagaaggagggcatgaacagggtcgtt
gtccaggtgtcttctgggtgcaacatactgcaggataccaaggtcatcattgttaaagag
ttcttcaaatccctgctgttatcattctcaccgactttggacgagcacaaccctgacatc
cctgagtggagagaggatgtgggccgtgtggtgaggacagctgtgtcacaggtgtctggg
tttccagaagagcagctgttggtatcgttgtttccaggtgttccaacaacagcagaacta
tttatcctgcctgagactcagttgtctgaacatgggaaagggaatgaagagggcttagtg
agtatatcagacattcttataaatgccctgaaccaaggattgatccagtttgagttgaaa
cctgacactcaaataattgtttacatcacacagctaacttcggcacctctggtcgattcc
aacccaattcacagtagctcagccatgctgatgttgctatctgtggcgtttgttggttta
gttgcattcttcatcttcaagttcaaaaggaaaatcccttggatccatgtccaggctgag
gagaaccaggaaaaggagccggagaggatcggcacggttaggcagaacaacaccatgtcc
aagatgacgcacagtgagttcccctcagagaaggaacttacagagaaagaactggaggcc
aggaccagaggagaaaatggaagaaatggggagagagtgatcacaagagagtttcctact
tgtactaatgtttaa
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