Oncorhynchus nerka (sockeye salmon): 115113239
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Entry
115113239 CDS
T07952
Name
(RefSeq) zinc finger SWIM domain-containing protein 8-like isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115113239
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
115113239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
115113239
NCBI-ProteinID:
XP_029496528
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All DBs
Position
LG28:complement(31321712..31369047)
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AA seq
1978 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSGGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRMRAVKDPLQIGFHLSATVVSPQTGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIIGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDDMVVLWRLA
VLDPTMSPQRRLELASQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEVAY
PLPGITYCSADKKSASFCWARAVQQQRGAKAGLAGDTSELGGGGGRSGSSEGGGGDYKGR
TPQQEVAVRPKETIVSKRKGLSAGGGGGVLVRLGGSVCLSLEEGSSKGMYKGAGSSSSIG
GKAKLAQGGKSSSGGSAGVGGKHQAAKRRTSSEDSSLEPDMAELSLDDGSSLALGAEASN
TFDFTPPPPEMLPSPSPLLREPHKYSGGGKGAGNMPKERSFEVKRVTLAATLPATESQPA
FPLKENAAVVVEAAVALEKEVEVEAEMEVNGNKEVAPAGDARLSTSVAVVTVTAAAAKPP
RSGRRETGAGAVALPNQSPGAGGDPVGEDDYRAYYLNAASEEGAERVPENNHEEEPDIFA
GIKPLEQEGQMEVLFACAEALHAHGYSNEACRLAVELAGDLLANPPDLKVEQPQTKGKKS
KVSTSRQTQVATNTLVKTSFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKALEVKLA
YQESEVVALLKKIPLGLVEMTSIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVCT
VVSPTGSRPPSRNRNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLAL
ALMITYKDDQSKLKKILDKLLDRESQTHKPQTLSSFYSSKPAASSQRSPSKHAAHNAHGH
GGATGGVSKHAPNATAAAGSSSVQAVAAGGAAGQLAGSGVQNNATPGEGVSEAREQADGA
QPASCDQPSEAVPFKPEGTVPSRLALGGRGAYSGRCWGSPVRQKKKHTGMASIDSSAPET
TSDSSPTLSRRPLRGGWAAASWARGQDSDSISSSSSDSLGSSSSSGSRRAGGGARAKSTD
TSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGHQGP
HRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECWDGH
LTPPEVASLADRASRARDPNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQVHVRYS
SVLQKTHRTTHDNVMLEKACMAVEEAAKGGGVYPEVLFEVAHQWYWLYEQTVGGGSGAQR
EGPGRCRANGGAGRRPPETGHGVTDNSGNMESSGVATVTASVTAAAVVPVISVGSTIYQS
HALPGSAMAHPHSQGLHPYTTIQAHLPTVCTPQYLGHPLQHVPRPTVFPLSGGAYPQCVC
VPSQGMHPAFIGAQYPFSVATGPHPPMAATAVTFPGIPVPSMTQIAVHPYHTETGLPLST
TVAGATTFSSFYPVGGVHSGATIQAIQGSSLPGMSSQPVSLVSAPFPSEDEQHSQPISQQ
GLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNYVYQFC
VGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRLIHL
TPADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5937 nt
NT seq
+upstream
nt +downstream
nt
atggaactaatgttcgccgagtgggaagacggagaaaggttctccttcgaagattctgac
cggttcgaagaagactcgctctgctccttcatatcagaagctgagagtctgtgtcagaac
tggaggggatggagaaaacagtctggtggaccaaattctcctacagttaagattaaagat
ggtcaggtcatccctctggtggagctttcagccaagcaggtggcattccatatcccgttt
gaggtggtggagaaggtctatcctcctgtccctgagcagctgcagctacgcatcgcctac
tggagcttccctgagaacgaggaggacatccggctgtactcgtgtctggccaacggcagc
ccagatgagttccagcgaggggagcagctgtacaggatgagggctgttaaagaccctctg
cagataggtttccacctcagtgccaccgtggtatcgccccagactggccaatcaaaaggg
gcatacaatgtggctgtcatgtttgaccgctgccgcattacctcctgcagttgcacctgc
ggggccggggccaagtggtgtgcccacgtggtggccctctgcctcttcaggatccacaac
gcgtctgcagtgtgcctgcgagcccccgtttcagagtccctgtcccggctgcagagggac
cagctgcagaagtttgcccagtacctaatcagcgagcttccccaacagattttgcccaca
gcccagaggctcctggatgagctcctgtcctcccagtccacagccatcaacacagtgtgt
ggggctccagaccctactgctggcccctcggcctctgaccagagcacttggtatctagat
gagtccacgctcagtgacaacatcaagaagacgctgcacaagttctgtggcccctctcct
gtggtcttcagtgacgtcaactccatgtacctgtcatccacggagccaccggctgcggca
gagtgggcatgtctgctgagacctctgagggggcgggagcctgaggggatctggaacctc
ctgtctatcgtcagggagatgttcaagaggagggacagcaacgctgcacctctactagag
atcctcactgagcagtgtctcacttatgaacagattattggctggtggtacagcgtgcgt
acgtcggcgtcccacagcagtgccagcgggcacacggggcgcagtaacgggcagtcggag
gtggcagcccacgcctgcgccagcatgtgtgatgacatggtagttctgtggaggctggct
gtgctagaccctaccatgagccctcagaggcgtttggagctggcctcccagctcaagcag
tggcatctgaaagtgattgagattgtgaagcgagggcaacatcgcaagtccctggacaaa
ctgttccagggcttcaagccagccgtggagtcctgctacttcaactgggaggtggcctac
ccactgccaggcatcacctactgcagtgctgacaagaagagtgcctccttttgctgggcc
agggcagtgcagcagcagagaggggccaaggctggcctggctggagacacctctgaactt
ggaggaggaggggggagatctggcagctctgagggaggtgggggagactacaagggcaga
actccccaacaagaagtggctgtcaggcccaaagagaccattgtgagcaagaggaagggg
ttgtcggccgggggcggaggaggggtcctagtacggctagggggcagtgtctgtctttct
ctagaggagggcagtagtaaggggatgtacaaaggcgcaggttcctcctcgtccattggg
ggcaaggctaagctggcccagggggggaagtcgtcctccgggggatcagcaggggtaggg
ggaaaacaccaagcggccaagcggcgcaccagcagtgaggacagctccctggagcctgac
atggccgagctgagcctggatgatggctccagtctggcgctgggcgccgaggccagtaac
acctttgacttcacacccccgccacccgagatgctaccctcaccaagcccgctactcaga
gagccacacaaatacagtgggggagggaaaggggccggaaacatgcccaaggagcgctcc
ttcgaggtcaaacgtgtcactcttgctgccaccctgcctgccactgagtcccagcccgcc
ttccccctcaaggagaacgccgctgtcgtcgtggaagcggctgttgccttggagaaggag
gtggaagtggaggcagagatggaggtgaatggaaataaggaggtggcccccgctggagac
gctcggctctctacctcggtcgctgttgttaccgtgactgctgctgccgccaagccaccg
cgtagtgggcgccgagaaactggcgctggagccgtagccctgcccaatcagagcccaggg
gcagggggagaccctgttggagaggatgactaccgggcctactacctaaatgcagcctct
gaggagggggcagagagagtgccagagaacaaccatgaggaggaaccagacatctttgct
gggatcaagccactggagcaggagggccagatggaggtgctgtttgcatgtgcagaggcc
ctccacgcccatggctacagcaacgaggcctgcagactggcagtggagctggctggagac
ctgctggccaaccctccagacctgaaggtggagcagccccagacaaagggtaagaagagc
aaggtgtccaccagcaggcagacccaggtggccaccaacaccctggtcaagacctccttc
ctgctgacggtgctgagcgagaggctggagctccacaacctggctttcagcacgggcatg
ttctccctggagctgcagaggcccccagcctccaccaaggccctggaggtcaagctggcc
taccaggagtcagaggtggtggctctgctgaagaagatccctctgggcctggtggagatg
acgtccatacgggacagggccgagcagctccgagacgggaacttctgtgactacaggcct
gtcctgcccctcatgctggccagcttcatatttgatgtgctgtgtaccccagtttgtaca
gttgtctcccccacaggttcccgtcctcccagccgtaaccggaacaacgagatgcctgga
gacgaggagctgggctttgaggctgctgtcgcagcactgggtatgaagaccacagtgagc
gaggcagagcaccctctgctgtgtgaggggaccaggagagagaaaggagacttggctctg
gctcttatgatcacatacaaggatgaccagagcaagctgaaaaagatcctggacaaactg
ctggacagagagagccagacccacaagccccaaaccctgagttccttctactccagcaag
ccagctgccagcagccagaggagcccgtccaagcacgctgcccacaatgctcacggacac
ggaggtgccaccggaggggtgtccaaacacgccccaaacgccacggctgcagctgggtcc
tcctctgtgcaagcggtggctgctggtggggcagcaggacaactggcgggcagcggtgtg
cagaacaacgccacacccggagagggcgtcagtgaggccagagaacaagcagatggcgcc
cagcctgcgtcatgtgaccagccgagtgaggcggtcccattcaagcccgagggcactgtg
cctagtcgcttggcgctgggaggacggggggcatacagcgggcgctgctggggctctcct
gtccgccagaagaagaaacacacaggcatggcgagtatcgacagcagtgctcctgagacc
acctcagacagctcccccaccctcagccgacgtccactcagagggggctgggctgcggcc
tcctgggcgaggggccaggacagtgacagcatcagcagctcttcctctgattcgctgggc
tcctcctcatccagtggctctcgcagggccggagggggagctagggctaagagcacagac
accagcaggtataaagggcgtcgtcccgagtgccatgcaccccatgtgcccaaccagcca
tcggaggcggcggctcacttctactttgagctggccaagacggtgctgatcaaggccggg
ggcaacagctccacctccatcttcacccagccctcagccagcgggggccaccagggtccc
caccgcaacttgcacctctgtgccttcgagattggcctgtacgccctgggcctgcacaac
tttgtctcgcccaactggctatccaggacctactcctcccacgtctcctggatcacaggc
caggccatggagattggcagtgctgccctcaacatcctggtggaatgctgggacgggcac
ctcacccctcccgaggtggcatcactggcagacagggcatcacgggcgcgggaccccaac
atggttcgcgctgcggccgagctggccctgagctgcctgccccatgcacacgccctcaac
cccaatgagatccagagggccctggtgcagtgcaaggaacaggtacatgtccggtactct
tcagttctgcagaagacacatcggactactcatgacaatgtgatgctagagaaagcctgt
atggctgtagaggaggcagccaaggggggcggtgtgtaccctgaggttctgtttgaggtg
gcccaccagtggtactggctctatgagcagacagtaggagggggctcaggggcccagcgc
gagggcccgggacgctgcagggccaacggtggagctgggagaaggcccccggagactggt
cacggtgtgacggacaacagtggcaacatggagtcctctggtgttgccacagtgactgcc
tctgtgacagcagcggctgtggtgcccgtcatctctgtgggctccaccatctaccaatca
cacgcccttcctggctctgccatggcccacccccactcccagggcctgcatccctacact
accatccaggcccacctgcccactgtctgcaccccccagtacctggggcacccgctgcag
catgtcccccggcccactgtgttccccttgtcagggggtgcatacccacagtgtgtatgt
gtgccctcccagggaatgcacccggcctttatcggtgcccagtacccgttctcagtggcc
accggcccccatccgcccatggcagcaactgcggtcaccttccctggtattcctgtgccg
tccatgacccagatcgccgtccacccgtaccacactgagaccggcctgcctctgagcacc
actgtagcaggagccacgactttttcctctttctatccagtaggtggcgtccattcaggc
gccacaatccaggccattcaggggtcatctcttcctggtatgtcttcccagcccgtctca
ttggtcagcgccccctttccgtctgaagacgagcagcatagccagccaatcagccagcag
ggtcttcactacctgcactcagcctacagagttggcatgctggctttggagatgcttgga
aggagggctcacaacgaccaccccaataacttctcccgcagccccccatacacggaggat
gtcaagtggctcctgggcctggctgcacggctaggtgtgaactacgtgtaccagttctgt
gtgggtgcggctaagggtgtgctcagccccttcgtccttcaggagatcatcatggaggct
ctccagagactcaaccccgcccacatccatgcccacctccgcacgcccgccttccatcag
cttgtgcagcgctgccagcaggcctatctacagtacatccaccaccggctgatccacctg
accccggccgactacgacgactttgtcaacatcatccgcagtgcccgcggggccttctgt
ttgacccctgtgggaatgatgcagttcaatgacgtgcttcagaacctgaagaggggcaag
cagaccaaggagctgtggcagcgtatctctctggagatggccaccttctccccatga
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