Oncorhynchus nerka (sockeye salmon): 115113355
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Entry
115113355 CDS
T07952
Name
(RefSeq) TATA-binding protein-associated factor 172-like
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115113355
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
115113355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TPR_Trm732_C
Vac14_Fab1_bd
HEAT_MROH2B_C
HEAT_2
HEAT_GCN1
HEAT_GCN1_C
TOR1L1_N
HEAT_EZ
Ltn1_1st
Motif
Other DBs
NCBI-GeneID:
115113355
NCBI-ProteinID:
XP_029496757
LinkDB
All DBs
Position
LG28:38396594..38461228
Genome browser
AA seq
1860 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKTAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWSPSPKPKEESSADFSPEDSDSDRLSFYRFDISRLLKHGASLLGS
AGAEFEVQDDKSGEVDPKERLTRQRKLLQRKLGLDIGAAIGMDTMELFNDEDLDTQYITP
SGPKAQGQGGTGSGPCSSSHNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRSK
DMDPNERSNDSFDGEPEEKRRKTTNVVIDQPAMEHKVLIDNVPDNSSHLEETQEWPLESF
CEELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVECTAEQMALQHQEWLEDVVIRL
LCVFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMNDSGVAMTVDILLKLLTEDQWEVR
HGGLLGIKYALAVRKDLISAMLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGFVQLLP
NKVPFIVNTLWDALLELDDLTASTNSIMTLLSSLLTYPQVRQCSMQQSLTVLVPRVWPFL
RHTISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQKV
WTELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKARCKEKAGGKPRQGA
LVQVKETVQEYIAGAETVTEDPITRDYVVTRARLMAAKLLGALCRCMCDPQVNSSSQDIR
PAESLGQLLLFHLNSKSALQRIAVALVLCEWAAVQKECQVVSALVQPRLLAILSEQLYYD
EIAIPFTRMQNECKQLISLLADAQIDVHDRLNCSVFTIDQASELVTTIFTESTVGLNIKS
KQFQPLDGKRQQAQSTVGETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAA
KREENTLVQGYAASFIAKLLQQCAGRQPCPNSKIVKNLCSSVCVDPLLTPSSACPVSTTQ
ETAKAGTSEKECMHHVVNKTKGIITLYRHQRAAFAITSKRGPTPKTAKTPTTELPPGSTI
TTDTDENKKTCLVQRRGAEFSLMTIARHFGQELTGSLPYLWESMVGPLRAVVEGNEGIDW
KLQMEKGDAAAQDLVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAAR
CVGVLSKIATMETMHLFLERVLPWLGCIEDSTKQEGAIEAMACVMEQLDVDIVPYIVLLV
VPVLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFLEQLL
DSRKLENYKIPVPIQAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGD
HYLRAQEYAKTKAADSTPLPSLVVCPPTLTGHWVDEVGKFCTKEYLNPLHYTGPPTERAR
LQHQVKKHNLVVASYDVVRNDIDFFRNVKFNYCILDEGHVIKNGKTKLSKAIKQLAANFR
VILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLA
MEALHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVGVEDTI
STASTQEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRD
IQHSPKLSALKQLLLDCGLGSSGSAEGTEAVVAQHRVLIFCQLKSMLDIVEHDLLKLQLP
TVTYLRLDGSVQASLRHAIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNP
MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANAVISQENASLQSMG
TDQLLNLFTLDKDGKDDKGELSSSGGKASIKNVLDGLGDLWDQLQYDTEYNLDSFMHTLH
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggccgtttcaaggcttgatcgtctttttatcctgcttgacactggaactactccggtg
acgaggaagactgctgcccaacagctgggagatgtggtcaaactccacccacatgagctc
aacaacctgttgtcgaaggtattgacatacctgagaagtccaaactgggacacgcgtatc
gctgcgggtcaagcagtggaggccattgtgaagaatatcccagagtggagcccatcaccc
aagcccaaagaagagtcctctgcagacttttccccggaggactccgactctgaccgtttg
agtttctaccgattcgacatctcccgcctcctcaaacatggtgcttctctactgggttct
gccggcgctgagtttgaggtccaggatgacaagtctggtgaagtggaccctaaggagcgt
ctcacccgccagaggaagctgctgcagaggaagctgggactggacataggtgccgcaatc
ggcatggacacgatggagctgttcaatgatgaggacctggacacccagtacatcacgccc
agtggccctaaggcccagggacagggagggacgggctctggaccctgctccagctcccac
aaccacgtgcccatgcaggcggcagagataatagactcagagtttcgacctggcatgagc
aaccgacagaagaacaaggctaagaggatggccaagctagtggccaagcagcgatccaaa
gacatggatcccaacgagagaagtaatgacagttttgatggggagcccgaggagaagcga
aggaaaactaccaacgtagtcatcgatcaaccggcaatggagcataaagtcttaatcgat
aatgttccagacaactccagccacttagaagagacccaggagtggcccctagagagcttc
tgtgaggagctctgtaacgacctcttcaacccctcatgggagattcgtcacggtgcaggc
acaggcctcagggagatcctcaagtctcaaggtgctggaggagggaagctggtggaatgc
actgcagaacagatggcgctgcagcaccaggagtggctggaggatgtggttatcaggctg
ctctgtgtctttgctctggaccgttttggagactttgtctctgatgaggtggtggctccg
gtcagagagacttgtgcccagacactgggcgtggccttgcgccacatgaatgacagcggc
gttgccatgactgtagacatcttgctgaagctgctgacggaggaccagtgggaggtccgg
cacggaggtcttctgggcatcaagtatgccctggcagtccgaaaggacctgatctccgct
atgcttccgcgggtgctccctgccatcacagaggggctgcaggacctggatgatgacgtc
agagcggtggcagccgcagccctcatccctgtggtggacggctttgtacagctactcccc
aacaaggtcccgttcatagtgaacaccctgtgggatgctctcctggagctggatgacctg
actgcctccaccaacagcatcatgaccctactgtcctcgctgctcacctacccccaggtc
cgacagtgcagcatgcagcagtccctaacggtccttgtccctcgggtctggccattcctt
agacacaccatatcatcagtcagacgggccgcattagagaccctctttaccttactgtcc
aaagccgaccagagctgcgcactatggctgaaccaggtcctgcaagacatgctccgacac
atcttccagtcttgcatcctggagagcaatcaggagatcctggacctcatccaaaaggtg
tggacagagctgctgcgccaggcccctcagcagtacgtggtggcagccagctgtccctgg
atgggcgcctggctctgcctgatgatgcaagcctctcacatccccatagacatcaacatg
ctgctggaagtcaaggctcgctgcaaggagaaggctggcggtaagcctcgccagggagcc
ttggttcaggtgaaggagactgttcaggagtatatcgctggggcggaaactgtgaccgag
gacccaattacgagagactatgtggtgacacgggctcgcctcatggccgcaaaactgttg
ggggccttgtgtcggtgtatgtgcgacccgcaggtcaactcctcctcacaggacatccga
ccggctgagtcgctgggccagctgctcctcttccacctcaactccaagtctgccctgcag
cgcatcgctgtggccctggtcctctgtgagtgggctgctgtgcagaaggagtgtcaggtg
gtgtcagccttggtccagcctcgcctcttagccatcctgtcagagcagctgtactacgac
gagatcgccattcccttcacacgcatgcagaacgagtgtaagcagctcatctccctgctg
gccgacgctcagatcgacgtgcacgaccgcctcaactgcagtgttttcaccatcgaccag
gccagcgaactggtgaccaccatcttcaccgagtccaccgtgggtctgaacattaagtcc
aaacagtttcagccactggatggcaagcgtcagcaggcccagtccacggtgggcgagacc
agtgtggagtggcagcagctgcacctgcgagtccacatgttcaccgcctgcgccgtggtc
aacttgcaggcgctgccagacaagctgaacccggtggtgcgtcctctgatggaggcggct
aagcgggaggagaataccctggtgcagggctacgccgcctccttcattgcgaagctgctg
cagcagtgtgctggtaggcagccatgtcccaattccaagatcgtcaagaacctgtgttca
tcggtctgcgtggaccccctgctcacgccctcctcggcctgtccggtgtccacgactcag
gagactgctaaagctggcacgtcggagaaagaatgcatgcaccatgtggtcaataagacc
aagggcatcatcaccctgtaccgtcaccagagggcagcatttgccatcaccagcaaaagg
ggccccacccccaaaaccgccaagacacccaccactgaactgccccccggcagcaccatc
accacagacactgatgagaataaaaaaacctgtctcgtccagagaagaggcgcagagttc
tctctgatgacgattgccaggcactttggccaggagctgacagggtcactgccctacctg
tgggagtccatggtgggacctctgagggccgtggtggagggcaacgaaggcatcgattgg
aagctccagatggagaaaggggatgctgcggcccaggatctggtcaactcactgcaggtc
ctggaggtcactgctggggccatggcccccgagctcaaacctctgttgttggagcacctg
ccccacctgttcacctgtctgcagcatccgtacacggccgttcgtcacatggcggcgcgc
tgcgtgggcgtgctcagtaagatcgctaccatggagaccatgcacctgttcctggagcgt
gtgcttccgtggctggggtgcatcgaggacagcactaagcaggagggggccatcgaagcc
atggcctgtgtaatggagcagttggatgtggacatcgtgccatacattgtgctgctggtg
gtgccggtgctgggccgcatgagtgaccccagtgacagcgtccgtttcatggccacgcag
tgcttcgccaccctcatccgcttgctacccctggaggctggtatcccggaccctcccacc
atgtcggatgatctgattcgccagaaggccagagagcgtcactttctggagcagctgctt
gacagcaggaagctggagaactacaagattcctgtgcccatccaggctgagctccgcaag
tatcagcaggacggagtgaactggctgtccttcctgaacaagtacaagctccacggtatt
ctctgtgacgacatgggactgggcaagaccctgcagtccatctgcatcctggccggggac
cactacctcagggcacaggagtatgccaaaaccaaggcggcagacagcacccccctgccc
tctctggtggtgtgcccccccaccctgacaggtcactgggtggatgaggtgggcaagttc
tgcaccaaagagtacctgaacccactgcactacacgggaccccctacagagcgagcccgt
ttacagcatcaagtgaaaaagcacaacctggtagtagcctcttacgatgttgtacggaac
gacattgacttttttaggaatgtaaaattcaattattgtatcctcgacgagggccatgtg
atcaagaacgggaagaccaagctctcaaaagccataaagcagttggccgccaacttccgt
gttatcctatcaggaacgcccatccagaataatgttctggagctgtggtcgctctttgac
ttcctcatgcccggcttcctgggcacagaacgccagtttgctgcccgctacggcaagccc
atcctggccagccgtgatgccaagagctcatcgcgtgagcaggaggccggggtgctggcc
atggaggcgctgcatcgccaagttctgcccttcctcttgaggaggatgaaaaaggacgtg
ctgcaggacctgccccccaagatcatccaggactactactgcaacctcagccctctacag
gttcagctgtatgaggactttgccaagtcccgggccaaggtcggtgtggaggacaccatc
tctacagcctccacccaggaggaggagaagcccaagctgaaggccacgggccacgtgttc
caggctctgcagtacttgaggaagctgtgtaaccacccaggcctggtactgctgccacag
caccctgagtacaagcgtatcacagaccagctggcagcacaacactccagccttcgagac
atccagcattcgcctaaactctcagccctcaaacagttgttgttggactgtggtctgggc
agcagtggctcagcggagggcacagaggcggtggttgcccaacacagagtgttgatcttc
tgtcagctgaaaagcatgctggacatcgtggagcacgacctgctcaagctccagctgccc
acagtcacctacctgcgacttgacggcagcgtgcaggcgagcctgcgccacgccatcgtc
tccaggttcaacaatgacccctccattgacgtgctgctgctcaccacgcacgtgggtggt
ctgggtctgaacctgactggtgctgacacggtggtgtttgtggaacacgactggaacccc
atgagagacctacaggccatggaccgcgcccacaggataggacagaaacgcgtggtgaat
gtgtatcgtctgatcactcggggcactctggaagagaagatcatgggcctgcagaagttc
aagatgaacatcgccaatgcggtcatcagccaggagaacgccagcctgcagagtatgggc
accgaccagctcctcaacctcttcaccctggacaaggatgggaaggatgataagggcgag
ttgtcgtcctccggagggaaagcctccattaagaacgtgctggacggtctgggggacctg
tgggatcagctgcagtatgacacagagtacaacctggatagcttcatgcacacgctccac
tag
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