Oncorhynchus nerka (sockeye salmon): 115113426
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Entry
115113426 CDS
T07952
Name
(RefSeq) serum response factor-like isoform X1
KO
K04378
serum response factor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115113426
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115113426
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
115113426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
115113426
NCBI-ProteinID:
XP_029496895
EnsemblRapid:
ENSONEG00000040494
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Position
LG28:complement(41967428..42031912)
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AA seq
597 aa
AA seq
DB search
MLPSQAGSAPSGNGSASVSGNTGYGSVVIGSGIRPVLVRAVQTTTGVSDSTGAVGMLGGN
GPEVGRRGGARPVSGTGLTTLQTAGQGGIGSLNTGVGVHGGSRYDPDKKCAPMGCSGSDA
DSDSGDDDDLMGSIRDNRRGVKRERLEMEAAVTGQGTGVPPGAYGLVPGGVAGAKPGKKT
RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR
KLQPMITSETGKALIQTCLNSPDSPPRNDPSTDQRMSATGFEETDLTYQVSESESLGETK
DQLKPAFTVASLPGTTSTHTPTAPTTSTSMQVSSGPSFPITNYLAPVSASSNVNANGTIL
KTTGASGGQVMQLPSGFTFMSAGTSLPPGTPTIPLSQLHQHSLAIQGQTLTSSQLTQQGQ
QAVFRFPTAVSLGGGMTQQLQAIQVHPTTHANDSSSEISQTSSVSTATIVTSSVPTSMAG
HMMYTSPHTVMYASTPTLADGGLTVLNTFSQGPSAMQVSHGQCQDTGETTLDYSRLRWDT
GAVPQVFLTAPSGTMQIPVSAVQLHPMVISQKSSFSSRKLAELQMVNLDTTQSAKND
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgttaccaagccaggctggatcagcaccatctggaaacggatcagcgtctgtcagtggt
aacacaggttacggttctgtggttattgggagtggaattcgccccgtgttggtcagagca
gtgcagacgacaactggggtcagcgacagcaccggtgcggttgggatgttggggggcaac
ggtccagaagtgggtcgaagaggtggggcaagaccagtgagcgggacgggactgacgact
ctacagaccgccggacagggaggcatcggaagtctgaatacgggagttggggttcacgga
gggagccggtacgacccagacaaaaagtgtgcgcccatggggtgcagtgggtcagacgct
gattcggactcgggggatgatgacgacctgatgggatcaatcagagacaacagaagaggt
gtaaagcgggagagactggagatggaggctgcggtgacagggcaggggactggggtacca
ccgggggcttatggtttagtccccggaggtgttgctggcgcaaaaccggggaagaagaca
cgtggacgtgtaaagataaaaatggaatttatcgacaacaagttgagacgatacacaact
tttagcaagaggaagacaggcataatgaagaaggcttatgagctctccacgttgacagga
acccaggtcctgctactggtggccagcgagacaggccacgtctacacgttcgccacgcgg
aagctccagcccatgatcaccagcgagacaggcaaggccctcatccagacgtgcctcaac
tctccggactccccgccccgcaacgacccctccactgaccagcgtatgagcgccacaggc
ttcgaggagacggaccttacctaccaggtgtctgagtcggagagccttggggagaccaag
gaccagctaaagcctgcgttcacggtggccagcctcccaggcaccaccagtacccacacg
cccacggcccccaccacctctaccagcatgcaggtaagcagcgggccctccttcccaatt
accaactacctggcgcccgtctcggccagcagcaacgtcaatgccaacggcaccattctc
aagaccaccggtgcctccggagggcaggtcatgcagctgcccagcggcttcaccttcatg
tcagcaggcacttcgctcccccccggcacccccaccattcctcttagccagctgcaccag
cactccttggccatccaggggcagacgctcacctcatcgcaactgacacagcagggccag
caggccgtcttccgcttccccactgcagtctccctagggggagggatgacccagcagctg
caggccatccaggtgcaccccaccacacatgccaacgacagcagctcggagatatcccag
acctcctctgtctccactgcgaccatcgtcacatcgtcagtgcccacatctatggcgggt
cacatgatgtacaccagcccccatacagtgatgtatgcgtccacgcccacgctggccgat
ggtggcctgactgtgctcaataccttttcccagggcccctcggccatgcaggtgtcccat
ggacaatgccaggacacaggtgagaccacgctagactacagtaggctacgctgggacaca
ggtgctgtccctcaggtattccttacggcaccctcgggcaccatgcagatcccagtctcg
gcagtgcagctacacccaatggtgattagtcagaagtcgagctttagcagcagaaaactg
gcagagctgcagatggtcaacctggacaccacacagagcgctaagaacgactga
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