Oncorhynchus nerka (sockeye salmon): 115113521
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Entry
115113521 CDS
T07952
Name
(RefSeq) cadherin-5-like
KO
K06533
cadherin 5, type 2, VE-cadherin
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04514
Cell adhesion molecules
one04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
115113521
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
115113521
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115113521
04090 CD molecules [BR:
one04090
]
115113521
Cell adhesion molecules [BR:
one04515
]
Cadherins
Major cadherins
115113521
CD molecules [BR:
one04090
]
Proteins
115113521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_2
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
115113521
NCBI-ProteinID:
XP_029497145
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Position
LG28:complement(49396110..49409056)
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AA seq
765 aa
AA seq
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MMRKSAWRQMTGPEMWMGLFALALTLSLTMAEHVDQRPALQTSPVLHRHKREWLWNNLYV
EEERPTNKQYYIGKLKSTRSGDGTHYVIKGEGANTIFKVDEKGHIYVTERLDREEKSKYL
LSAKLFDTSNILVEKVEEFVILVTDINDNDPVFTKSFNASIKERSKSGTKVIEVTATDAD
DPTTANGELAYTLLEGGDFFNIDNTTGIITTKYENLDRETQSSYVVVVQAQDLRGLKQGG
TATTSVTIAVSDINDNIATFTKRSYVFSVKEDMKRGQRIDTIVLEDRDEIQNKDPIVTIE
PPSDTFEMERSQNKDGNLMLKQGLDYETKSSYTFFVHVRENHLQSPVDNKDNPVIKAQVT
IQVLDVDEQPEFSKSIYNFNVIEEIMVNNIGVVSARDPDKANKAIRYSIEDKDSPIGINP
ITGQLFTVRKLDRELVANHMFQVKAKEEPNGLESFVNVNILVIDINDNKPELSIEEIFVC
ENDMAGTVIGTISATDKDYNLPAFSFTLVKPNGNFSVVDNNDNTSNIVLKHGGFSLEDSR
DYVIEIGISDGGRPPMSSITTLPIKVCRCDNKRIHTQCKAAQLKMGVGVYTLIPILCILT
ILIIVILIAMRKRHQKDALVTLGKSEIHEQLVTYDEEGGGEMDTNGYDVSILTSARNDGS
MSMRQGHSLYAIVKKPPTACKGDMAVMIEVKKDEADHDRDGIPYDTLHIYGYEGPESLAG
SLSSLDSSSTGSSLDYDFLNDWGPRFRTLAELYGVDGSEGSDSLY
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgatgagaaagtctgcatggaggcagatgactgggccagagatgtggatgggtctcttt
gccttggccctgaccctcagtctaaccatggctgaacatgtggaccagaggccagcactc
caaaccagcccagttctccacaggcacaagagagagtggttgtggaacaacctttacgtg
gaggaggaaaggccaaccaacaaacaatactatatcggaaagttaaagtcaactagatct
ggtgacgggacacactatgtcattaaaggagaaggtgccaacactatcttcaaagtggat
gaaaaaggacacatctatgtcactgaacgattggatcgagaggagaaaagcaaatacctt
ctaagtgccaagctgtttgatacgagcaacatcttggtggagaaagtggaggagtttgtg
atcctggttactgacatcaatgacaacgatccggtgtttaccaaatcgttcaacgcttct
atcaaagagagatccaaaagcggaactaaagtgatagaagtcactgccactgatgcagat
gatccaacgactgcaaatggagaacttgcttacactttattagaggggggagatttcttc
aatatagacaacacaacggggattatcaccaccaagtatgagaacctggaccgtgagacc
cagagtagctatgtggttgtggttcaagcccaggatctgagaggacttaaacaagggggc
accgccaccacctctgtcacaatcgcagtcagcgacatcaatgataacatagccacattt
accaaacgttcctatgtatttagtgtgaaagaggacatgaagcggggacagagaatagac
accatagtcctggaggacagagatgagatccagaataaagacccaatcgtcaccatagaa
cctccatctgacacatttgaaatggagcgcagtcagaacaaagacggcaacctcatgctg
aaacagggactggattatgaaaccaagagcagctacacgttctttgtgcacgtgagggag
aaccacttgcagtcccctgtggataataaggacaatcccgtgatcaaggcccaggtgacc
atccaggtgctagacgttgatgagcagccagaattcagcaagagcatctacaactttaat
gtgatagaggaaattatggtcaataatattggagtcgtttcagccagagatcctgataaa
gccaacaaggccataaggtattccatcgaggacaaggacagtcccattggtatcaacccc
ataactggacaacttttcacagtgaggaagctggatcgggagcttgtagcgaatcacatg
ttccaggttaaagctaaggaggaacccaatggactggaatcttttgtgaacgtcaacata
ctggtcattgatatcaatgacaacaaaccagagctgtccattgaagagatattcgtttgt
gaaaatgatatggctggcacggtgattgggaccataagtgcgacagacaaagattataat
ttgcccgcattcagcttcacattggtgaagccgaacggcaacttttcggtcgtcgataac
aacgacaacacatctaacatagtcctgaaacatggaggcttcagcctggaggactccagg
gattatgtcatagagattgggatcagcgatggaggcaggcctcccatgagcagcatcacc
actctgcctatcaaagtgtgcaggtgtgacaacaagaggattcacacccagtgcaaagca
gcccaactaaaaatgggtgtgggtgtctacaccctgattcctatactgtgcatcctgact
attctgatcatagtgatcctgatcgctatgagaaagcgtcaccaaaaggacgccctggtc
actctgggtaagagtgagatccacgagcagctagtgacatacgacgaggagggcggtggg
gagatggacaccaacggctacgacgtgtccatcctgacctcagctcggaatgacggcagc
atgagcatgaggcagggccacagcctttacgccatagtgaagaaaccgccaaccgcgtgc
aagggagacatggccgtgatgatcgaggtgaagaaagatgaagctgaccatgacagggat
gggatcccctacgataccctgcacatctacggctacgaggggccagagtccctggctggt
agcctcagttcgctggatagttcatccactggctctagccttgactatgacttcttaaat
gactggggccctcgcttcagaaccctggctgagctctacggggtagatgggtctgaggga
agtgactccctgtattga
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