Oncorhynchus nerka (sockeye salmon): 115113633
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Entry
115113633 CDS
T07952
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115113633
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
115113633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_16
TPR_CcmH_CycH
TPR_8
TPR_12
TPR_17
TPR_10
TPR_11
TPR_7
TPR_6
TPR_Slam
ARM_TT21_4th
ANAPC3
TPR_EMC2
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
115113633
NCBI-ProteinID:
XP_029497354
LinkDB
All DBs
Position
LG28:56603944..56613512
Genome browser
AA seq
1149 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQTKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDAKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSTNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLSKLEKARLAFGRALELNSKCVGALVGLAV
LELNSKEPDSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYSKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSTFVLPFFGLGQMYVYRRDKENA
AQCFEKVLKAYPNNYETMKILGSLYATSDDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNLGALHFRLGNLGEAKKYFLASLER
AKAEGEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDSKNLYAANGIGAVLAHK
GYYREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLKKFYKHQNTEVV
LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATLVLKDEKSNLKAVL
SAVKELELAHRYFSYLAKAGDKMRFDLVLASTEARQCSDLLSQAQYHVARARKQDEEEKE
IRAKQDQERDFLRQQMHKEQEEKRTKLEEDQKKLLEQRAMYVEKTKGLLSFADGMKEERK
EKRKGGGRRKKGDFDEFVNDGSDEDLPVRRRKKRKGGSGSEEEGRRKKRRPNKGGDDGSD
DEEGGSRPKKQRKPRAGGKKMQKYEPVPPSLKGKIKSKAIISSSDSSSDEDGLKIAEDRN
PRDSGSGSDNEGGHKKRIASDSESDGGRNRSGSEAGSPQRSGNSGSDSGSDRPVKRKRVQ
QQSDSEQSDNESKRSRSGSENESRPGSPAAASGSEAGSPACSPHRSDNGSEPGGSAKEAS
NHGSGSDSD
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggggatcaattgaaatccccttacgggacaccgatgaggtcattgagcttgat
ttcgaccagctgccagaaggagatgaggtcatcagtatcctgaaacaggagcatacacag
ttgcacatatggattgctcttgctctggagtattacaaacagacgaagacggaggacttt
gtcaagctgctggaggcggcccgtatcgatgggaacctggactacagagaccatgagaag
gaccagatgacctgtctggacaccttggcagcctactatgtccagcaggcacgtaaagag
aagaacaaagatgccaagaaggagctcatcactcaggccaccctgctctacaccatggca
gacaagatcatcatgtacgaccagaaccacttgttgggaagagcctgtttctgcctgctg
gagggggacaaaatggaccaggctgacgctcagttccactttgtcttgaaccagtctacc
aataacatccctgctctacttggtaaagcttgcatctccttcaataagaaggattacagg
ggagcattggcctactacaagaaggctctacgcacaaaccctggatgtcctgccgaggtg
aggctggggatgggccactgctttgtcaagctcagtaagctggagaaggcccgtctggcc
tttggccgggccctggagctcaactccaagtgtgtgggagcccttgtgggcttggctgtg
ctggagctcaacagcaaggagcccgactccatcaagaatggagtgcagctcctatccaga
gcctacaccatcgaccccagcaaccccatggtgctcaaccacctggctaaccacttcttc
ttcaaaaaggactacagtaaagtgcagcacctggctctccatgcctttcacaacacagag
gtggaagcaatgcaggctgagagctgctaccagttggcccgctcctttcatgtacaggag
gactatgaccaggccttccagtactactaccaggccacccaatttgcctcgtctaccttt
gtgctgcctttctttggcctggggcagatgtacgtgtaccgtagagacaaggagaatgca
gcccagtgctttgagaaggtcctaaaggcctaccccaacaactatgaaaccatgaagatc
ctgggatctctttatgctacttcagatgatcaggaaaagagagacattgccaaaggtcat
ctgaagaaggtgaccgagcagtaccctgatgacgtggaggcctggatcgagctggctcag
atcctggagcagaccgacatccagggcgccctctctgcctacggcacggccacccgcatt
ctgcaggagaaggtccaggctgacgtcccccctgagatcctcaacaacctgggggctctc
cacttcagactggggaacctgggagaggccaagaaatacttcctggcctctttggagcgg
gccaaagctgagggagagcatgacgagcattactacaacgccatctctgtcaccacgtct
tacaacctagccaggctctacgaggccatgtgcgaattccacgaggcggaaaaactctac
aagaacatcctgagggaacatcccaactacgttgactgttacctgcgacttggcgcaatg
gctcgtgacaaaggaaacttctatgaagcttccgactggttcaaagaggctctgcagatt
aatcaggatcacccagacgcctggtccctgatcgggaatctccacttggccaagcaggag
tggggtccgggtcagaagaagtttgagcgtatcctcaagcagccgtccactcagaacgac
acctactccatgctggctctgggcaacgtgtggctccagaccctgcaccagcccaccagg
gaccgggagaaggaaaagagacatcaggatcgagccctggccatttacaaacaggtccta
cgaaacgactccaagaacctttacgctgccaacggcataggtgccgtcctggcccataag
ggctactaccgagaggcccgtgacgtgtttgcccaggtgagagaagccacagctgatatc
agtgacgtctggctcaacctggcccacatctacgtggagcagaaacagtacatcagcgct
gtgcagatgtacgagaactgtctgaagaaattctacaagcatcagaacactgaggtggtg
ctgtacctggctcgggcactcttcaaatgcgggaaactccaggagtgcaaacagactctg
ctgaaggcacgtcacgtggcccccagtgacacagtgctgatgttcaacgtggccctggtg
ctgcagaggctggccactctggtgctgaaggacgagaagagtaacctaaaggctgtactc
agtgctgtcaaagagctggagctggcccaccggtatttcagctaccttgccaaggcaggt
gacaagatgaggttcgacctagtgcttgcctctactgaggccaggcaatgctctgacctg
ctgagtcaggctcagtatcacgtggctcgggccaggaagcaggacgaggaggagaaggag
atccgggccaagcaggatcaggagagggacttcctgcgccaacagatgcataaagaacag
gaggagaagagaaccaagctggaagaggatcagaagaagctgctggagcagagagccatg
tacgtggagaagaccaagggtctgctctccttcgccgatggaatgaaggaggaaaggaaa
gagaagaggaaaggtggcggccgacgcaagaaaggggactttgatgagtttgtcaacgat
ggctctgatgaggacctgccagtgagaaggaggaagaagaggaagggaggcagcgggagt
gaggaggagggccgcaggaagaagaggagacccaacaaagggggtgacgatggcagcgat
gacgaggaaggaggctcacggcctaaaaagcaacgcaaacccagagcaggcggcaagaag
atgcaaaagtacgagcctgtgccaccatctctcaaaggcaagatcaagtcgaaggccatc
atctcatcctccgactcttcatcagacgaggatggactgaaaattgctgaagacagaaac
cccagagacagtggttcaggctctgataacgagggcggccacaagaagcgcatcgcctcc
gacagtgagtccgacgggggccggaaccgctctggcagcgaagctggaagcccccaacgc
tccggaaactcaggtagcgactcgggcagcgaccgtccagtgaagaggaagagagtgcag
cagcagtctgactcagagcagtctgataacgagagcaagaggagccgctctgggtcggag
aacgagtcccgacctggctcaccggccgcagcctctggctctgaagcaggttctccggcg
tgctccccacaccgctccgataacggatcagaaccagggggctctgccaaagaggcctcc
aaccacggctctggctctgacagtgactga
DBGET
integrated database retrieval system
