Oncorhynchus nerka (sockeye salmon): 115113856
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Entry
115113856 CDS
T07952
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
115113856
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115113856
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
115113856
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
115113856
NCBI-ProteinID:
XP_029497695
LinkDB
All DBs
Position
LG28:17643288..17947398
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AA seq
1392 aa
AA seq
DB search
MLAEPDATVLHGSGNSMMSRNIYHNKNQDSSISISKMDVIIPFSPDVPCDNNGQRMWWAF
LASSMVTFFGGLFIILLWRTLKYLWTVCCHCNTKKKEAQKVNNPANSQAADGTPKGPDEK
DEVVPASEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALGIYFIDSSDPIESCQ
NFYKDFTLQIDMFFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRS
WLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDP
WENFQNSQSLSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEI
IELIGNRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNIS
PNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCPDPDAEDASNIM
RVISIKNYSPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQG
LSTMLANLFSMRSFIEIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPAVCELCYVKLK
LLLIAIENKSELGESRSRKRILINPGNHVKMQEGTLGFFIASDAKEVKRAFFYCKACHDD
ITDPKRIKKCGCKRLIYSKYKYNGYVRSPAEGATTPGITGSQKETGVRFKADCNLGKSLS
IKYSIDQMYSFLSLKDEVRSSLQNRSIKIANCTSPPSTITSNAMRPQALPRPSLHQDPPV
PQGEVTAVPLVNNRKGSLLPPGVGLGPHGGFRISTSGSGRGDTAGRALAEQSRLSRARSL
PVKYCYHPSNASLHGHSSRACSRHDPLLIPGNEQMENMDMNVKQYDSTGMFHWCPSKEIE
KVILTRSEASMTVLSGHVVVCIFGDVTSALVGLRNLVMPLRASNFHYHELKPIVFVGSLE
YLRREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDKECI
LASLNIKSMQFDDSIGLLQANSQGFTPPGMDRSSPDSSPVHGLVRQASVTTGANIPIITE
LAKPGKILPLVSFSQEKNCGINIQMITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGT
AFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEALLAEENALRGGYSTPQTLANRD
RCRVAQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLATPSQCTKRYV
ITNPPYEFELVPTDLIFCLMQFDHNAGQSRASLSHSSHSSHSSSKKSSSVHSIPTTNRQN
RSSKAREAGHKQNATRMNRMSQERKWFTDEPENAYPRNIQIKPMSTHMANQINQYKSTSS
LIPPIREVEDEC
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgctagctgagccggatgccaccgttctccatggaagcggcaactctatgatgagtaga
aatatctatcataataaaaatcaggactcctcgatctctatatccaagatggacgtgatc
atccccttctcgccagacgtgccctgcgacaataatggccaacgcatgtggtgggcattc
ctcgcctcctctatggtgacgtttttcgggggtctcttcatcattctcctttggaggacc
cttaaatacctgtggaccgtgtgctgccactgcaacaccaaaaagaaggaggcccagaag
gtgaataaccctgctaacagtcaggcagcagatgggacacctaagggtcctgatgagaag
gacgaagtggtacctgccagcgaggtggggtggatgacctctgtgaaggactgggccggg
gtcatgatatcagcacagacactcaccggcagagtcctggtcgtgctcgtctttgctctc
agcattggagcacttggaatatactttatagactcttctgatcccatagaatcctgtcag
aatttctacaaagatttcacgttacagatcgacatgttcttcaatgtcttcttcctcctc
tactttgggctgcggttcatagctgccaatgataagctgtggttctggctggaggtcaac
tcagtggtggacttcttcactgttcctcctgtcttcgtatcggtctacttgaataggagc
tggctgggcttaagattcctgagagccttgagattgatacagttctcagaaattttacag
tttttgaatatcttaaaaacaagcaattccatcaagctggtgaacctgtgttccatcttc
ataagcacatggctaacagctgccggattcatacatttggtggaaaactcaggggatcct
tgggaaaacttccaaaattcccagtcactttcctattgggaatgtgtctacttgctcatg
gtcactatgtcaacagtgggctacggggacgtctatgcaaaaaccaccctgggacgcctg
ttcatggtcttcttcatccttgggggtttggccatgtttgccagctacgtccctgaaatc
atagagttaataggaaaccgcaagaaatatggtggttcctatagtgcggttaatgggaga
aagcacattgtggtctgtggtcatataacgctcgaaagtgtctccaacttcctcaaagac
ttcctacacaaggacagggatgatgtcaatgtagaaattgtttttctccataatatttcc
cctaatcttgagctggaagccttgttcaaacgccactttacccaagtggagttctaccag
ggatctgttctcaaccctcacgatctggcccgtgtgaagattgagtcagcagacgcctgt
ctgattctggctaataaatactgtccagatcccgatgctgaagatgcctccaacatcatg
agggtcatctctatcaagaactattcccccaagatacgaattatcactcaaatgttacaa
taccataacaaggctcacctgctcaacattcctagctggaactggaaggagggggatgat
gcgatctgtctagcagagctgaaggctggcttcatagctcagagctgtctagcccagggc
ctctccaccatgcttgccaatctcttctccatgaggtctttcatcgagattgaagaggat
acgtggcagaagtactatttagaaggggtagctaatgagatgtacacagagtatctgtcc
agtgcctttgtggggctctccttcccagcagtctgtgagctgtgctacgtgaagctgaag
ctgttgcttatcgccatcgagaacaagtcggagctgggagagagcagaagccgaaagcgc
atcctcatcaacccggggaaccacgtaaagatgcaggaaggaactctggggttcttcatc
gccagcgacgccaaagaagtaaagagagcatttttctactgcaaagcttgtcacgacgac
atcacagaccccaaacggatcaaaaagtgtggctgcaaacgactgatttattccaaatat
aagtataatggatatgtcagatcaccagcagagggcgctacaacaccagggataacggga
agtcaaaaagagaccggcgttcggttcaaagcagattgcaatttaggtaaatctctcagt
ataaagtatagtattgaccaaatgtactcatttctgtccttgaaggatgaagttagatca
tctttacaaaaccgatcgataaaaattgccaactgcacctcgccgccctccaccatcacc
tctaatgccatgcgcccccaagcactgcctcgcccctccctccaccaggaccccccggtc
ccccagggagaggtcaccgccgtacccctcgttaataaccgtaaaggaagcctgcttcct
ccaggggtgggtcttgggccccatgggggattccgcatcagtacctcaggctccggcagg
ggtgacacggcgggcagggccctggctgaacagagcaggctgagccgggcccgcagcctg
ccggtgaaatactgttaccaccccagtaacgcatctctgcacggccacagcagcagggcc
tgtagcaggcatgaccctctactaatccctgggaacgagcagatggagaacatggacatg
aatgtgaagcagtacgactccacgggaatgttccactggtgcccatctaaagagattgag
aaggtcatcctgacccggagtgaggcatccatgacggtgttgagcggccatgtagtggtc
tgtatatttggagatgtcacgtccgctctagtggggctgcgaaacttggtgatgcctttg
agagccagcaacttccattatcacgagctgaagcccatagtgtttgtgggctcgctggag
tacctgaggagagagtgggaaactctacacaacttccccaaggtctccatactacctggt
acgccattaagtcgtgcagatttaagggctgtcaacatcaacctctgcgacatgtgcgtg
atactgtcggccaatcagaacaatatcgacgacgcctcgctgcaggataaggaatgcatt
ctggcgtcgctcaacatcaagtctatgcagtttgacgacagcatcgggctcttgcaggct
aactcccaaggtttcacgcctcctggaatggaccggtcctctccagacagcagtccagta
catggtttagtacgccaggcctccgtcaccaccggcgccaacatccccatcattactgaa
ctagctaaacctggcaaaatactgcctttggtttcattcagtcaggaaaaaaactgtgga
atcaacatacaaatgataactgagctggtgaacgactccaacgttcagttcctggaccaa
gatgatgatgatgacccggacacagagctgtacctgacacagcccttcgcctgcggaacc
gccttcgctgtcagcgtgctggactctctcatgagtgcaacatacttcaacgataatatc
ctcaccctgatccggacgctggtgactgggggagccaccccggagctagaggctctattg
gccgaagagaacgccctgcgagggggctacagcacgccacagacactggccaaccgagac
aggtgtcgtgtagcccagctagccctctatgacgggccctttgccgacttgggggatggc
ggttgctatggagatttgttttgtaaagcgttgaagacgtacaacatgttgtgcttcgga
atatacagattgagagacgctcacctcgccacgcctagccagtgtaccaaacggtatgtg
atcaccaaccctccgtatgagtttgagctggtccccacagacctgatcttctgcctgatg
cagtttgaccacaacgcgggccagtcccgggccagcctctcccacagctcccactcctcc
cattcctccagcaaaaagagctcgtccgtccactccatccccaccaccaaccggcagaac
cgcagcagcaaggcccgggaggccggccacaaacagaatgcaacaaggatgaatagaatg
agccaagaaaggaaatggtttacagatgaaccagaaaatgcctacccacggaacattcag
atcaagcccatgagcactcacatggccaaccaaatcaaccaatacaaatccactagcagt
ctgattccaccaatcagagaagttgaagatgaatgctga
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