Oncorhynchus nerka (sockeye salmon): 115113865
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Entry
115113865 CDS
T07952
Name
(RefSeq) VPS10 domain-containing receptor SorCS1-like
KO
K27081
VPS10 domain-containing receptor SorCS1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115113865
Membrane trafficking [BR:
one04131
]
Protein recycling
Others
Others
115113865
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
115113865
NCBI-ProteinID:
XP_029497699
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Position
LG28:27625854..27715269
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AA seq
1233 aa
AA seq
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MWMWLFTLTSTLDLIKTEIRCIPSCQLPVIKPAPRELSEVVFDPFGKVSEDEIVGLAEKS
PRCHPFNGRCKEVKVAEYLARVSGDGEVISVRKSEQHFANKSYSRGFKTRQSREKLSSSE
ELYQHQSGSGIYIPSATLNKVSVKITRHNKINCFGRENILKLRELSKNKVGASFRSRGRR
RKRSFQTAESRATWSGFGWNGEDASTPGQHDELKLISSTFALTGDSAHNQAMVHSSGQNS
SVILMLTKYFDFSLGSVTESSLWRSIDYGTTYEKLNEKVGPKTLLSYLYVSPNNKQKIML
LTDPEVESSLLISLDEGASYQRYHLAFDILSLLFHPEQEDWILAYGHDQKLYVSVEFGRR
WQLVHDRVVPNRFYWSKLGLDQEPGMIHLETSVSDRRSQYITCKLQNCSEANKGRPFPGF
ISPDSLVVQDQYVFIQVPMGGRPVHYVSYKRNAFFPMKLPKYILPKDLQIISTDDNQVVA
AVQDWHQNDSYNLYMSEARGLFFTLALENVVSSGGPEGNIMIDLYEVAGIKGVFLSNKVV
EGQVKTFITYNKGRDWHLLQAPTTDLKGTRLYCVQPYCSLHLHLHVSDNPYTSGNIVSKE
SAPGIIVASGTIGPELTAYNVSIFITSDAGNTWREVFEEEYSVFFLNQGGALVAIRHTPL
PIRHIWLSFDEGKRWNKYSFTPSPLYVDGVLGEPGEDTLIMTIFGHFSHRSEWQLVKIDF
KAIFNRRCNTDDYQTWQLHNDGKVCIMGVKRIFHNLKPDTRCIKTRDQYISQMSDSCPCT
EADFECDYGFERQSGGGCTPVFWFVPSSVSTDCTTGDSFLNTTGYRKALSNNCTAETLGK
YSPRSQRCPRQAPRGLQLVTSEGTLTATMGDNITFLVFLEESDGSTTSITLDFGDGTAIS
YANISSIEDGIKHIYSKVGIYRVAATALNSLGSERVLLYLHVTCLLEQVQLSAPSVVVRN
EAVNLSTVLKPRYVGSVTYYWWINNHTEPVMTLVGGMSFTFSKEGTHTVTVQVSVGNTVL
QDKITVAVYEHFKSHVLAFSSNLEAFNPGVPEWRQDISRVIKDSMVQVTGISGEQLLVSV
LPGLPTAAEFCIVPEKRSTEGRMDGKVTHLEQLSLVLLSALNQDLIQFTLQPGVQINVYA
TQLSPAPIMDTSESGHNGATVIMLVSVVFVGLAVFVIYKFKRKIPGINIHTNEREKQQEV
IPSVVSIAVPNPEGDMVSTLEHLDTGPDARGIV
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgtggatgtggctctttaccttaacttccaccctggacttgatcaaaacggagataagg
tgcattccatcatgccaactccccgttatcaagccggctccccgtgaactctctgaagtg
gtatttgacccatttggaaaagtatcagaggatgaaattgtggggttagcagagaagtca
ccacgttgtcacccgttcaatggcagatgtaaagaagtcaaagttgcggaatatttagcg
cgcgtctccggtgatggggaggtcatttcggtgcgtaaatccgagcagcactttgcaaat
aaatcatacagccgtggatttaaaacacgtcagagcagggagaaactttccagttctgag
gagctttatcagcatcaaagtggctcgggcatttatattccatctgccaccctcaataaa
gtatccgtcaaaatcactagacataataagattaattgttttggaagagaaaatatactt
aaactacgtgaattatcaaaaaacaaggttggagcaagttttaggagccgtggaaggaga
cgaaagcgtagcttccagacggcggagagcagagcaacttggtccggattcggatggaac
ggtgaagatgcctcaaccccggggcaacatgatgagttgaaactcattagttctacgttc
gcactcaccggggattcagctcataaccaagccatggtgcattcgtccggacaaaatagc
agtgtgattctaatgctgactaagtactttgacttcagccttggcagtgtcacagagagc
tctctatggaggtcaatagactatggaaccacatatgagaaacttaatgaaaaggtggga
ccaaaaacattactaagctacttgtacgtgagtccaaataacaaacaaaagatcatgtta
ctgaccgacccagaggtggagagcagcctgctcattagtcttgatgagggcgcatcctat
cagaggtaccacttagccttcgacatcctcagcctcctcttccaccccgagcaggaggac
tggatcctggcttacggccatgaccagaagctgtacgtctctgttgaatttggaagaaga
tggcagctcgtgcatgacagggtagtccccaacagattttactggtcaaaactgggtttg
gaccaagagccaggaatgattcacttggagaccagtgtttctgatagacggtcccagtat
ataacgtgtaagctgcagaactgctcagaggccaacaaaggcaggcctttccctggattt
atcagccctgattccctggtcgttcaggaccagtatgttttcattcaggtaccaatgggt
ggccggcctgtccattatgtgtcttacaaaagaaatgctttcttcccaatgaagctacct
aagtacatattaccaaaggacttgcagataatcagcacagatgataaccaggtggtagca
gcagtgcaggactggcaccagaatgactcctacaacttgtacatgtcagaggcccgagga
ctcttcttcactctggccctggagaacgtagtgagcagtgggggaccagagggcaacatc
atgatagacctctatgaggtagcagggataaaaggggtgttcttgtcaaataaagttgtt
gagggccaagtgaaaacgtttatcacttacaataagggacgagactggcatcttctacag
gctccaaccactgatctgaagggaaccagactctactgtgtacagccctactgttcatta
cacctgcatctccatgtgtctgacaacccgtacacgtctggaaacatagtcagtaaggaa
tcagctccaggaattatagtagcatcaggtaccattgggcccgagcttaccgcctataat
gtcagcattttcatcacctcagatgctggcaacacttggagagaggtatttgaggaggag
tatagtgtcttctttcttaaccagggtggtgccctagtggccattcgacacacacctctc
cccatcagacatatctggctgagttttgatgagggaaaacgctggaacaaatacagcttc
accccctctcctctctatgtagacggggtcttaggagagccaggggaagacaccctcatc
atgacaatatttggccatttcagccatcgttctgagtggcagcttgtcaaaatagacttc
aaggccatctttaacagaaggtgtaacacagacgactatcagacctggcagttacacaat
gatggtaaagtctgcattatgggagtgaagagaatctttcataatctgaagcccgacacc
agatgtatcaaaaccagagatcagtacatctcccagatgtcagactcctgtccatgcacc
gaggctgactttgagtgtgattatggctttgagaggcagagtggtggaggatgcacccca
gtcttttggtttgttccatcctccgtgtccacagactgcaccactggggacagcttcctc
aacactactggataccgtaaggctctatccaataactgcactgcggaaaccctggggaag
tatagccctaggagccagaggtgtccccgccaggccccgagaggtctgcagctggtcacc
agtgaggggacacttacagccaccatgggggacaacatcaccttcctggtgtttctggaa
gagagtgatggctccacaacaagtataacattggactttggagacgggacggccatatcc
tacgctaacatcagctccatagaggatggaatcaaacatatatacagtaaagtgggcatt
taccgagtggctgccacggcactcaacagccttggctctgagagagtcttactataccta
catgttacctgtctacttgagcaagtgcagctttcagctccctcggtggttgttaggaat
gaagcagtgaatctatcaacagtcctgaagccacgttacgttggatcagtcacctactac
tggtggatcaacaaccacactgagcctgttatgactttagtgggaggaatgtccttcacc
ttctcaaaggagggaacccatactgtcaccgtgcaagtgtcagttggtaacaccgtcctt
caagacaaaataactgttgctgtctatgaacatttcaagtcacacgttttagccttctcc
tctaatctggaggccttcaatcctggtgtgcctgaatggaggcaggacatcagtagagtg
atcaaggactccatggtccaagtcacagggatcagtggagagcagcttctagtgtcagtg
ctcccagggttgccaacggcagcagagttttgcatcgtccctgaaaaaaggtcaaccgag
gggagaatggatggaaaagtgacacatttagagcagctctctctagttctgctaagtgcc
ctgaatcaagacctcatccagtttactctgcagcctggggttcagattaacgtctatgcc
acacaactgtctccagctcctatcatggacaccagtgagagtggtcacaatggtgctaca
gtcattatgctagtgtcagtcgtatttgtgggtttggcagttttcgttatctacaagttc
aaaaggaagatccctggcatcaacatccacacaaatgagcgagagaaacaacaggaagtg
atcccttcggtggtgtctatagctgtcccaaaccctgagggggacatggtgagcactttg
gagcacttggacacaggaccagatgcacgtggcatagtttga
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