Oncorhynchus nerka (sockeye salmon): 115114054
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Entry
115114054 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
one01002
]
115114054
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115114054
Enzymes [BR:
one01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
115114054
Peptidases and inhibitors [BR:
one01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
115114054
Ubiquitin system [BR:
one04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
115114054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
RasGEF_N
FAST_1
Motif
Other DBs
NCBI-GeneID:
115114054
NCBI-ProteinID:
XP_029497886
LinkDB
All DBs
Position
LG1:complement(20179090..20266774)
Genome browser
AA seq
2620 aa
AA seq
DB search
MTATTRGSPVGGNDNQAGQAPDAQSQSQPPLPQNQTASPNSTNENSPVSPPDEQGQGDGP
PQLEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIELSKKGLDVKCEACQ
RFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMA
TNPHCKFHIYNGTRPSETVPAGVQLADDELFARPPDPRSPKGWLVDLINKFGSLNGFQTL
HDRFIGGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLENLTDEELKKE
AKNEAKNDALSMIIKSLKNLASRVPGQEETVKSLEIFRLKMILRLLQISSFNGKMNALNE
VNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQPQYVEKLEKIL
RFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWT
NASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILD
YSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPHVF
YRHDLINQLQHNHALVTLVAENLSAYMETMRQFSKAEQAEFDPQTVRAGSRYSHVQEVQE
RLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKLMGDEPDLDPDIN
KDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDYLWR
VVIQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFDRLKASYDTLRVLDGD
KDSINSARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAFRGKHITLTVRFPNQG
RQVDDLDIWSHTNDTIGSVRRGILTRIKANATHTKIELFIGGDVVDPADDRKLIGQLNLK
DKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNHFSDGPNPEVESCLPGVIMSLHLR
YISFLWQVADLGCGINMPLLRDGARVLMKLMPPDNSTVEILRAMCLDHAKLGENSLSPTL
DSRFFGPSPSQVLYLIEVVYALLMPASATLGEDASDFQYNFLKSGGLPLVLSMLTRNNFL
PSADMETRRGAYLNALKIAKLLLTAVGFGHVKAVAEACQPNAEGTIPVSPINQATHDQAL
VLQSALQNIPNPASECMLRNVAIRLAQQISDEASKYIPDICXIRAVQKIVWASGCGTVQL
VFSSNEEISKIYEKTNAAKEPDEEDEQVCCEALEIMTLCFSLLPTALDTLSKEKAWQTFI
IDLLMHCHSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVLGSTAKERAKHAGDYF
TLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIRDEVKRTGETGVEETILEGHIGITKE
LLAFQTSEKKYYIGCEKGGANLIKELIDDFIFPASNVYLQYMKSGEFPTEQAIPVCSSPA
SINAGFELLVALAVGCVRNLKQMVDTLTDMYYLGCEALTEWEYLPPVGPRPTKGFVGLKN
AGATCYMNSVIQQLYMIPPIRNGILAIEGTGTDVDDDMSGDEKQENESNVDPRDEVFNYH
HQFDDKPSLSKSEDRKEYNIGVLRHLQVIFGHLASSRLQYYIPRGFWKQFRLWGEPVNLR
EQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECEESFTTLN
VDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLKRFD
YDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNPENQVIQQNEPSEPEPPGSS
KYRLVGVLVHSGQASGGHYYSYITQRNVGGADGERNRWYKFDDGDVTECKMDDEEEMKNQ
CFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDSLDKDSELVKYIQELTISSSSN
NKPPHQVKMPGVIECSVRKQNVQFMHNRMQYSLEYFQFVKKLLTCNSVYLNPPPGQDHLL
PEAEEMAMISVQLAAKFLFSTGFHTKKVVRGPASDWYDALCVLLRHSKNVRYWFAHNFLF
AYTNRFSEYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCPSPTASPVGASTQPQACDNLS
LSDHLLRTVLNLLRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLKLSVPATFMLVALD
EGPGPPIKYQYAELGKLYTVVSQLVRCCDVAARMQSSINGNPPLPNPYGDANQTTPVMPV
QQLVGEILFVRTSYVKKIIEDCSNSEETVKLLRFSCWENPQFSSTVLSELLWQVAYSYTY
ELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCM
VALFSNCSVAYQILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPVQSNET
SNGYFLERSHSARMTLAKACELCPEECHLTKHGEAVSEEDAAMRKSSSPQQLLPGEGTGQ
QHTEPDDQEAPEDQDTSPPDDISLYPHSSPGTTTQFQQNNHPHGLPYTGPAAQHMNNPQR
PVPSSAPGPAPGTGPQAQDNWKSTEEVPSTTSLAPAPPKE
NT seq
7863 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaccacgcgtggctctcctgttgggggaaacgacaaccaggcaggccaggcg
cccgacgctcagagtcagagccagcccccgctgccacagaaccagacggcgtcccctaac
tccaccaatgagaactctccagtgagccccccggatgagcagggtcagggggatggcccc
ccccagctggaggaggaggagcctgccttccctcacacagacctggccaagctggatgac
atgatcaacagaccccgctgggtggttccagttcttccaaagggagagttagaggttctt
ctagaagctgctatagagcttagtaaaaaaggacttgatgtgaagtgtgaggcgtgccag
aggtttttccgagatggcctgaccatctccttcaccaagatccttacagacgaggccgtc
agcgggtggaagtttgagatccataggtgtatcatcaacaacacacaccggctggtggag
ctgtgtgtggccaagctttctcaggactggttccccttgctggagctgctggccatggcc
accaaccctcactgcaagttccacatctacaacggcacacggccctctgagacggtgcct
gccggggtgcagctggccgatgacgagctcttcgcccgcccccctgaccctcgctccccc
aagggctggttggtggatttaataaacaaatttggctcgttaaatgggtttcaaacactg
cacgatcgcttcataggtggccaagcactgaacgtccagatcatcgccgcacttatcaag
ccttttgggcagtgttacgagttcctcacattgcacacggtgaagaagtacttcctgccc
gtcatcgagatggttcctcagtttctggagaacctgacagatgaggagctgaagaaggag
gccaagaacgaagccaaaaatgacgccctgtccatgatcatcaagtccctgaagaacctg
gcctccagggtgcctgggcaggaggagaccgtgaagagtttagagatttttaggttaaaa
atgattcttaggttattgcaaatttcctcttttaatggcaaaatgaatgcactaaatgaa
gtaaacaaggtaatctcaagtgtgtcctactacacacatcgacatggcaaccctgaggaa
gaagagtggcttactgcagagcgcatggcggagtggatccagcagaaccacatcctgtcc
atcgtgctgagggacagtctgcaccagcctcagtacgtagaaaaactagagaagatactt
cgcttcgtcatcaaagagaaagctcttaccatgcaagacttggacaacatctgggctgca
caggctggtaaacatgaggccatcgtgaagaacgtccacgacctcctggccaagctggcc
tgggacttctcccctgagcagctcgaccacctttttgactgcttcaaggcgagttggacg
aacgctagtaagaagcagcgtgagaagctgctggagctgatccgtcgtctggcggaggat
gacaaggatggagtgatggcccacaaggtgctgaacctgttgtggaacctggctcacagc
gatgacgtgcctgtagacatcatggaccaggccctcagtgctcacatcaagatactggac
tacagttgctctcaggatcgagacacgcagaagatccagtggatcgatcgcttcatagaa
gagttgcgcaccaatgacaaatgggtgattcctgcactaaagcagatccgagagatctgt
agcctgttcggagaggctcctcagaatctcagtcagactcagaggagtcctcatgtgttc
tatcgtcatgacctgatcaaccagctccaacacaaccatgccctggtcacgctggtggct
gagaacctctctgcctacatggagaccatgaggcagttctctaaagccgagcaggcagag
tttgacccccagacggtgagggcagggagccgctacagccacgtacaggaagtccaggag
agactcaacttcctgaggttcctgctgaaggatggccagttgtggctctgtgcacctcag
gccaaacagatctggaagtgcctggccgaaaacgctgtcttcctatgtgatagagaggcc
tgcttcaaatggtactccaagctgatgggagatgagccagacctggacccagacattaac
aaggacttctttgagaacaacgtcctccagctggacccatctctgctcacagagaacggc
atgaagtgcttcgagaggttcttcaaggctgtcaactgtcgggagggaaagctggtggcc
aaacgcagggcctacatgatggacgacctggagctcataggactggactacctctggagg
gtcgtaattcaagggagcgatgacatcgccagtcgagccatagacctgctgaaagagatc
tacaccaacctcggaccaaaactacaagtcaatcaggtagagatccacgaggatttcatc
cagtcgtgcttcgaccgtctgaaggcgtcgtacgatacgctgcgtgtcctggacggggac
aaggacagcatcaactcggcccggcaggaagccatccgcatggtccgcgtgctcactgtg
ctcaaggagtacatcaacgagtgtgacagcgactaccacgaggagaggaccatactgccc
atgtccagggcattccgggggaagcacatcacgttgaccgtgcgttttcctaaccagggc
cgtcaggtagatgacctggacatctggtctcacaccaacgacaccatcggctcggtgcgc
cgtggcatcctcacacgcatcaaggccaacgccacgcacaccaagatagagctcttcatt
ggcggggatgtcgtcgacccagccgatgacagaaagctgattggccagctcaacctcaaa
gacaaaacgttgatcacagccaagctgacccaggtgagtgccaacatgccgtccagccca
gacagctcctcggactcttccaccggctcacctggtaaccacggcaaccacttcagcgac
gggcccaacccagaggtggagagctgtctccctggagtgatcatgtctctccacctgcgc
tacatatctttcctgtggcaggtagcggacctgggctgtggcattaacatgcctctgtta
cgagatggagccagggtactcatgaagctaatgcctccagataacagtaccgtggagatc
ctgcgtgccatgtgtctggaccatgccaagctgggagagaacagcctcagccccacactg
gactcgcgcttctttggcccctcgccatcacaagtcctctacctcatagaggtggtgtat
gccctactcatgccagccagcgccacattgggggaggatgccagcgacttccagtacaac
ttcctgaagagtggcgggctgcctcttgtactgagcatgctcacacggaacaacttcctg
ccttcggccgacatggagacacggcgaggggcgtacctcaacgctctgaagatcgccaag
ctgctgctcaccgctgtggggttcggacacgttaaagctgtggccgaggcctgccagccc
aatgctgaggggaccataccagtctcaccgatcaaccaggccactcatgaccaagccctg
gtcctccagagtgccctgcaaaacatccccaaccctgcctctgagtgtatgctccgcaac
gtagctatacgcctggctcagcagatctctgacgaggcgtccaagtacatcccagacatc
tgtnngatccgggcggtgcagaagatagtgtgggcgtcgggctgtggcaccgtacagcta
gtctttagctccaacgaagagatcagcaagatctacgagaagacgaatgcggctaaggag
ccggacgaggaggatgagcaggtgtgttgtgaggccctggagatcatgaccctgtgtttc
tccctgctgcccaccgctctggacacactcagcaaggagaaggcctggcagaccttcatc
atagacctgctaatgcactgccacagcaagtcagttcgtcagatggcccaggagcagttc
ttcctcatggccaccaggtgttgcatgggccatcgaccccttctcttcttcatcaccctc
ctcttcactgtgctggggagcaccgctaaggagcgggccaagcatgctggggactacttc
accctgcttaggcacctcctgaactatgcctacaacagcaacatcaacctgcccaacgca
gaggtgctgctcaacaatgaaatcgactggctcaagaggatcagggatgaggtaaagagg
acaggggagacgggcgtagaggaaaccatcctggagggccacatcgggatcaccaaggag
ctgctggccttccagacatcagagaagaagtactacatcggctgtgagaagggaggggcc
aacctcatcaaggagttgatagatgacttcattttcccagcatcgaacgtgtacctgcag
tacatgaagagtggggagttccccacggagcaagccatccctgtctgtagcagccccgcc
tccattaacgcaggcttcgagctgctggtggcgctggctgtgggctgtgtccggaatcta
aagcagatggtcgacacgctcactgatatgtactatctaggttgtgaggctctgacagag
tgggagtatctccccccggtgggaccgaggcccactaaaggctttgtgggactgaagaac
gccggagccacctgctacatgaactctgtcatccagcagctctacatgatcccgcccata
cgaaacggcattctggccatcgagggcaccggcaccgatgtggacgatgacatgtccggt
gatgagaagcaggagaacgagagtaatgtggacccgcgagatgaggtgttcaactaccac
caccagtttgacgacaagccatcgctcagtaaatcggaggacaggaaggagtacaacata
ggggtgctgcgccacctgcaggtcatctttggccacctggcctcctccagactgcagtac
tacataccgagaggcttctggaaacagttcaggttatggggcgagcctgtgaacctgcga
gagcagcacgatgccctggagttcttcaactctctagtggacagtctggacgaggctctg
aaagccctgggtcacccagccatgctcagtaaggtgctgggtggatcctttgctgaccag
aagatctgccaggggtgcccacataggtatgagtgtgaggagtcgttcaccactctgaat
gtagacatcaggaaccaccagaacctgttggactcaatggagcagtacgtcaaaggagac
ctgctggagggtgctaacgcataccactgtgagaagtgcaacaagaaggtggacacagtg
aagcggctgctgatcaagaagcttcccccagtgctggccatccagctgaagaggtttgac
tacgactgggagagggagtgtgctatcaagttcaacgactactttgagttccccagggag
ctagacatggagccctacacagtagccggggtggccaagctggagggggacgacgtcaac
ccagagaaccaggtgatccagcagaacgagccctctgaaccagagcccccaggcagctcc
aagtaccgcctggttggggtgctggtccactctggccaggccagcggcggacactactac
tcctacatcacacagaggaacgtgggcggggcagacggcgagcggaaccgctggtacaag
tttgacgacggcgacgtgacggagtgcaagatggacgacgaggaggagatgaagaaccag
tgcttcggaggggagtacatgggcgaggtgtttgaccacatgatgaagaggatgtcgtac
cggcgtcagaagcgctggtggaacgcatacatcctcttctacgagcggatggactcactg
gacaaggacagcgagctggtcaagtacattcaggagctgaccatctcgtcctcgtccaac
aacaagccgccgcaccaggtcaagatgcccggtgtaatcgagtgcagtgtgcgcaagcag
aatgtgcagttcatgcacaaccgtatgcagtacagcctggagtatttccagtttgttaag
aaacttctgacctgtaacagtgtctatttaaaccctccgccaggacaagaccatctactg
cctgaggcggaggagatggctatgattagtgttcagttggctgctaagttcctattcagc
actgggttccacaccaagaaagtagtgagggggcccgccagtgactggtatgatgcactt
tgcgtcctgctgagacacagtaagaatgtacgctactggtttgcacacaactttctgttt
gcctacaccaaccgcttctccgagtacctgctggagtgccccagtgccgaggtccggggc
gcgtttgccaaactcatcgtcttcattgcacacttctccctgcaagacggaccctgcccc
tcccccactgcctctcctgtcggagcctccacccaaccacaggcatgtgataacctgagt
ctcagtgaccacctgttgaggactgtattgaacctgctcaggagagaggtgtcagagcac
ggccgacacctgcagcagtacttcaacctcttcgttatgtatgccaacctggggctggca
gagaagacccagttgttgaagctgagtgtcccagctaccttcatgctggtggctttagac
gaggggcctggccctcccataaagtaccagtatgctgaactaggcaaactgtacaccgta
gtctcccaactggtgcgctgctgtgacgtggccgcgcgcatgcagtcctccatcaatggt
aacccccctctccctaacccgtacggtgatgccaaccagaccaccccggtgatgcccgtg
cagcagctggtgggagagatcctgttcgtaaggaccagctatgtgaaaaagatcattgag
gactgcagtaactcagaggagacggtcaagctgctgcgcttcagctgctgggaaaacccc
cagttctcctccactgtactatcagagctgctctggcaggtggcgtactcgtacacctac
gagctgaggccttacctggacctgctgctgcagatcctgctcattgaggactcctggcag
actcacaggatccacaacgtgctgaagggtataccagatgacagggatggcctatttgac
accatccagcgctccaagaaccactaccagaaacgggcctaccagtgtatcaagtgcatg
gtagccctcttcagcaactgctctgtggcctaccagatactacagagtaacggggacctg
aagcgtaagtggacgtgggcagtggagtggctcggtgacgagctggaaaggaggccctac
acagggaaccctcagtacacctacaacaactggtctcccccagtccagagcaacgagacc
tccaacggatacttcctggagcgctcgcactccgcacgcatgaccctggccaaggcctgt
gaactctgccctgaggagtgtcacttaacgaagcacggtgaggcggtgtctgaagaagat
gctgccatgcggaaatcgtcctcgccacagcagcttttgccaggggaagggacaggacag
cagcacactgagcccgatgaccaggaagccccggaagatcaggacacctcccctccagat
gacatctccctctaccctcattcgtctccggggactacgacacagtttcagcagaacaac
cacccccacgggctgccgtacacaggcccagctgcccagcacatgaacaacccccagcgc
cctgtcccttcctctgccccaggccctgcgcccggcacaggcccacaagcacaagacaac
tggaagagcactgaggaggtcccctccaccacctccttggcccctgctccgcctaaggag
taa
DBGET
integrated database retrieval system
