KEGG   Oncorhynchus nerka (sockeye salmon): 115114108
Entry
115114108         CDS       T07952                                 
Name
(RefSeq) collagen alpha-5(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one04510  Focal adhesion
one04512  ECM-receptor interaction
one04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:one00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    115114108
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    115114108
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    115114108
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:one04147]
    115114108
   00536 Glycosaminoglycan binding proteins [BR:one00536]
    115114108
Exosome [BR:one04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   115114108
Glycosaminoglycan binding proteins [BR:one00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   115114108
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 115114108
NCBI-ProteinID: XP_029497958
LinkDB
Position
LG9b:5148970..5210141
AA seq 1655 aa
MRTALLCFVLLGMMLLGIEAKDCACTGKSRCHCEGVKGNKGEKGYSGETGLPGSVGYPGS
EGHPGSVGPKGDVGPHGPPGQYGNRGPEGKEGFAGTPGLPGIPGLQGPMGQQGASGCNGT
EGKRGSTGPPGLHSSDGLRGSPGAPGPKGEPQTIGSGPPGPRGRDGDQGVSGSPGPTGPP
GEAGLLGVEGLIGLHGAPGLKGQEGRSSSIPGPRGLKGHQGPPGVPGPKGIKLYAHAPFD
MKGEIGELGEKGCKGSLGYAGHIHFKGAKGDQGDVGTEGRPGKDGDRGPAGYKGRNGNHG
SAGPDGIPGPWGQKGGQGQDGDPGEVTMIGEAVFGSGGAKGQQGFAGPPGPTGVTGPPGS
TGFQGPPGSPAPNYGDDPYNRGAIGPKGDKGDQGPIIDGEPGREGFPGTTGESGDPGPPG
PSGDSGNLKGFIGPPGEKGAKGLTGEQGYSGQYGLKGQKGEVCRLCTGKGSGEQGPPGPP
GQPGFPGFNAGPGPKGEPGIKGPSGPPGQPGPHGPSGVPGPPGMKGNPGSHNHRGIKGEK
GSPGLAGRSGKDGNHGNTGFPGRKGQRGPKGDPYYGPPGLKGDGGVPGPPGPQGYQGPDG
LPGPVGIGSLGHPGSKGNSGVPGLPGIAGYPGQKGEPSKRVAYQGVPGPPGQMGLPGLQG
PPGPRGSVGLHGLHGYQGEKGDSGVFSTLGGRGPTGTKGDKGHPGPPGTSGSGYPGRPGT
LGIPGVPGSKGDVGFGAPAPVGPNGFQGDVGARGPPGDPGLLGRPGNPGPIGLNGSPGPK
GSKGGVGSQGPPGYAHTDCTGATTGPPGPPGPAGRPGPPGLNGQTGALGASGAPGFGRSG
PAGDPGPPGVSGPGVQGLDGQKGGRGRDGLTGTPGPRGDPGLDGRSGSGPDGFPGSGGQP
GPRGSDGRDGDKGHRGVPGPVGDKGTTGPSGPAPITDLYGLPGDPGQLGLPGFPGARGDP
GYPGPKGIDGRDGDPGKHGPIGPPGDRGADDLYSVGGPGQSGPRGDIGSMGLPGPHGIKG
VLGYHGGLGQDGRPGPYGPKGTKGEPSYAQPGRIGPPGQKGEPALCNSHGSKGERGSPGC
AGRPGSQGPTGAKGDPGHHGHHGPLGPAGPPGTDGPPGPPGPTPSYGAPGQPGLPGPPGL
FGPKGNQGRDGIPGPAGQKGETLIVGSTPGLRGENGQPGPKGDVGFPGPTVLGPPGFTGD
QGIEGPQGPRGEPGHRAVCLKGLKGDTGPHGRPGSPGRRGPRGQPGSGGDGHKGDRGDTG
SPGGRGFDGPRGDPGLPGPWGPRAIPGPPGPIGDPGHPGPPGFPGETGDHSYNPGTKGPN
GAKGRPGPPGRPGLDVSGQVRFYQGDPGPLGHPGKQGLPGPSGLPGRPGFSGPTGPKGQH
GHSPPGLPGFPGRKGDKGSPGRTGPVGYQGSPGQKGSRGPWGSSTAGLADSFLLARHSQT
IRVPDCPRGTTLIYSGYSLLFINGNERAHGQDLGSMGSCLPRFSTMPFLFCDTDNTCRYA
ARNDYSYWLSTEKPMPRSMDLIRGDEIGSYISRCSVCEGSSNAIAIHSQTTQTPDCPRDW
ESLWPGYSFVMQTGAGAEGSGQPLVSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSYWLA
SIDPNRMFSKPVPQTVKGRLLENVISRCRVCRKPY
NT seq 4968 nt   +upstreamnt  +downstreamnt
atgaggacagcattgctttgtttcgtgctcctggggatgatgttgctgggaattgaggcg
aaggattgtgcttgtactgggaagtcgaggtgtcactgtgaaggagtcaaaggcaataag
ggagaaaagggttactcaggagagactggtctacctgggtcggttggctatccgggctca
gagggtcaccctggatcagtgggaccaaagggggacgtgggccctcatggacctccagga
caatatggcaatcggggacctgagggtaaagaaggatttgctgggacaccaggtctaccg
ggcatcccaggccttcaaggaccaatgggccaacaaggtgcctccggatgcaatggaaca
gaggggaagaggggttcaactggtccacctggtctccacagcagtgatggattaagaggt
tcacctggagcacctggaccaaagggtgaacctcaaacaattggaagtgggccacctgga
cctagaggaagagacggtgaccagggtgtctctgggtcaccaggaccgacgggaccacca
ggggaagctggacttcttggggttgagggattgataggcctacatggagcaccaggatta
aagggtcaagagggacgcagctctagtatccctggccctcgtggtctaaagggacaccaa
gggccccctggagtcccgggaccgaaagggatcaagctatacgcccacgctcccttcgat
atgaagggagagataggtgaactgggtgagaagggctgtaagggttcacttggttatgct
ggccacatccattttaaaggagcaaaaggggaccaaggggacgttggtactgagggaagg
ccagggaaggatggggatcgaggacccgctggatataaggggagaaatgggaatcacggt
tcagcaggtcctgatggaatccctggaccatggggacagaaaggtggtcagggtcaagat
ggtgaccccggggaggtgaccatgattggtgaggccgtgtttggctccgggggtgccaaa
ggacaacaagggttcgctggccctccaggtcccactggagttactggtcccccaggtagc
accggtttccaggggcctcctggatctccagctcctaactatggagatgatccctacaat
cgcggagcgattggacctaaaggagataaaggagaccaaggacccatcatcgacggcgag
ccaggcagagagggctttccaggaacaactggggaaagtggagaccctggacccccagga
ccatctggagactcaggaaatcttaagggctttataggacctccaggggaaaagggagcc
aagggcttgacaggcgaacaagggtacagtggccaatatggtttaaaaggtcagaaagga
gaggtctgtaggttgtgtacaggaaaaggttctggagaacagggacccccaggacccccc
ggtcagcctggattcccaggctttaatgcaggaccagggcccaaaggagagccaggaatc
aaaggcccatcaggaccacctggtcaaccgggtccccacggcccctcaggtgttccaggg
cccccggggatgaagggaaatccaggttcccacaaccaccgcgggataaagggagagaaa
ggatctccaggactagctggcagatcggggaaggatggaaatcacgggaacactggcttc
cctggacgcaagggccaacgaggccccaagggtgatccgtactatgggccgccgggtctg
aagggagatggtggtgtcccaggccctcccggaccacagggataccaaggaccagatggg
ttgccaggtccagtaggcataggatctcttggccacccaggatccaaaggcaatagtggg
gtaccaggtctacctggcatagctggctacccaggtcagaaaggtgagcccagcaaaaga
gtggcttaccagggagtcccaggtccaccaggacagatgggtctgcctgggttacagggc
cccccaggtcctcgtggtagtgttggtttacatggactacatggttaccagggggagaaa
ggagacagtggtgtattctccaccctgggaggacgaggacccactggaacgaaaggtgac
aaagggcacccgggacccccaggtacctctggaagcggctaccctggacgaccgggcaca
ctgggaatccctggggttccagggtcaaagggtgatgttgggtttggggccccagctcca
gtcggccctaacggtttccaaggtgatgttggggcccggggacctccaggagacccaggg
ctactgggacgaccagggaatccaggaccaataggcctcaatgggtcaccaggccccaaa
ggaagtaaaggtggggtaggttcccaaggaccacctggttacgcacatactgactgcaca
ggagccacaaccggaccacctggtccgccaggaccagcaggcagacccggacctccaggt
ttaaatggacagacgggtgcgcttggggcctctggcgctccaggttttggacgttcaggc
ccggctggtgaccctgggccccctggggtctccggacccggagtgcagggactagatgga
cagaagggaggcagagggagagatgggttaacaggcacaccaggtcctcgaggtgatcct
gggctggatggaagatctggatcgggccctgacggattccctggatctggaggacaaccc
ggacccagagggtcggatggccgtgatggggataaaggccatagaggtgtaccaggccct
gtgggggacaaaggaaccacaggtccttctggaccagcacctatcacagacttatatggg
ctcccaggggaccctggacagcttggtctgcctggttttcctggtgcaagaggagaccct
ggatatcctggaccaaaaggcattgatgggagggatggtgacccaggaaaacatgggcct
ataggtcccccaggtgatcgtggggccgatgacctatattcagtaggaggaccaggccaa
tctggacccaggggagatattgggagcatgggtttaccgggtccccatggaataaaggga
gttctgggttaccatggaggcctgggacaagacggtagacccggtccatacgggcctaaa
ggaactaaaggagagcccagttatgctcaaccaggccgcataggaccacctggacaaaag
ggcgagccagccttgtgtaacagccatggttccaagggagagagaggctctcctggttgc
gcaggtcgtccaggctcccaagggcccactggagccaaaggagacccaggacatcatgga
catcatggacccctaggtcctgcagggccaccaggtaccgatggtcctccaggcccccca
ggacccactccgtcatatggagctccaggacaaccagggttacctggccctcctggtctc
tttggtcctaaaggtaaccagggtcgcgatggcattcctggacctgctggtcagaaggga
gagacattgattgtggggtcgactcctggcctacgtggagagaatggacagccaggtcca
aagggagatgtgggttttcctgggcccactgttttggggcccccagggtttactggagac
caaggcattgaaggaccccaaggtcctcgtggtgagccagggcaccgagccgtttgtctc
aaagggctgaaaggagacactggtcctcatggcagacctggaagccctgggcgacggggt
ccacggggacagccagggtctggaggtgatggacataaaggggacagaggagacacgggc
tctccagggggccgaggcttcgacgggcccagaggggacccagggcttccagggccgtgg
ggaccaagagccatccctggacctccaggaccaataggtgacccaggtcatcctggacct
ccaggattccccggtgagacgggtgatcatagttataaccccggcacgaaaggaccaaac
ggggccaaaggccggccaggaccaccaggtcgtccagggcttgacgtgtctggacaagtg
agattctatcaaggggatccaggcccacttggtcaccccgggaaacaaggacttccaggt
ccaagtgggctgccaggacggccaggattttcaggccccacgggcccgaagggtcagcat
ggacacagccctccaggcctgcctgggttccctggacgcaagggggacaagggatcaccg
ggacggacagggccggtgggctaccaggggtctccaggacagaagggttctcgtggcccg
tggggctccagcacggcaggcctggctgacagtttcctgcttgcccgacacagccagacg
atcagagtgcctgactgccccagaggtaccaccctcatctactctggatactctctgctc
ttcatcaatggcaatgagagagcccacggacaagacctaggctccatgggcagctgccta
ccacgtttctccaccatgcccttcttgttctgtgacacggacaacacctgtcgctacgcc
gcccgcaatgactactcctattggctgtcgacggagaagcccatgccgcgcagcatggac
ctaatcagaggagatgagatagggagctacatcagcaggtgttcagtgtgtgagggcagc
tccaatgccatcgccatccacagccagaccacccagaccccagattgtcctcgtgactgg
gaatccctctggcctggatactcctttgtcatgcaaacgggtgcgggtgctgaggggtcg
gggcagccgctagtctccccaggctcgtgcctggaacacttccgccaggtccccttcatc
gagtgccacggccggggaacctgcaactacttcccagattcctacagctactggctggcc
tcgatcgacccaaatcgcatgttcagtaagcctgtgccccagactgtgaagggacgtctt
ctagagaatgtcatcagtcgctgccgcgtctgcaggaaaccctattga

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